BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25450.1
Length=1035
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894458 jgi|Araly1|894458|Al_scaffold_0006_2454 593 6e-169
Ahg894459 jgi|Araly1|894459|Al_scaffold_0006_2455 294 7e-79
> Ahg894458 jgi|Araly1|894458|Al_scaffold_0006_2454
Length=369
Score = 593 bits (321), Expect = 6e-169
Identities = 354/370 (96%), Gaps = 2/370 (1%)
Strand=Plus/Plus
Query 40 ATGGCGTCGTTTCTCCAGAGACTAGTAGATCCCAGGAAGAATTTCTTAGCTCGTATGCAT 99
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGTCGTTTCTCCAGAGACTAGTTGATCCCAGGAAGAATTTCTTAGCTCGTATGCAT 60
Query 100 ATGAAGTCTGTTTCTAATCGCCTCCGCAGATACGGTCTTAGATACGACGATCTTTATGAT 159
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 61 ATGAAGTCTGTTTCTAATCGCCTTCGCAGATACGGTCTTAGATACGACGATCTATATGAT 120
Query 160 CCTTTGTATGATTTGGATATTAAAGAAGCTCTTAATCGTTTACCGAGAGAGATTGTTGAT 219
||||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 121 CCTTTGTATGACTTGGATATTAAGGAAGCTCTTAATCGGTTACCGAGAGAGATCGTTGAT 180
Query 220 GCTCGGAACCAGCGTCTTAT-GCGTGCAATGGATCTTTCTATGAAACATGAATACCTCCC 278
||||||||||||||| ||| ||||||||||||||||||||||||||| || ||||||||
Sbjct 181 GCTCGGAACCAGCGT-TTAAAGCGTGCAATGGATCTTTCTATGAAACACGACTACCTCCC 239
Query 279 AGATAATCTTCAGGCAGTGCAGACTCCATTCAGGAGCTACCTCCAAGACATGTTGGCTCT 338
|||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 240 AGATAATCTTCAGGCAATGCAGACACCATTCAGGAGTTACCTCCAAGACATGTTGGCTCT 299
Query 339 TGTGAAGCGGgagagagctgagagagagGCTTTGGGAGCTTTACCTCTCTACCAAAGAAC 398
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 300 TGTGAAGCGGGAGAGAGCTGAGCGAGAGGCTTTGGGAGCTTTACCTCTCTACCAAAGAAC 359
Query 399 CATTCCTTAA 408
||||||||||
Sbjct 360 CATTCCTTAA 369
> Ahg894459 jgi|Araly1|894459|Al_scaffold_0006_2455
Length=1101
Score = 294 bits (159), Expect = 7e-79
Identities = 240/279 (86%), Gaps = 6/279 (2%)
Strand=Plus/Minus
Query 760 TCAAATATGGGCTATAGCATTCAAATTATCTAGCACTTGTTGCATGGATGGTCTT-TCCT 818
|||||| ||| |||||||||||| |||||||||||||| |||||||| ||||||| | ||
Sbjct 1101 TCAAATCTGGCCTATAGCATTCAGATTATCTAGCACTTCTTGCATGGTTGGTCTTAT-CT 1043
Query 819 T-GGGATCTCTTTCAAGGCAGT-TTTA-TGAGCTTGCACATACGCATCCCCTCTTCAACA 875
| ||| | || |||||||| | |||| | |||| ||||||| | | ||| || ||| |
Sbjct 1042 TCGGGTTGTC-CTCAAGGCATTGTTTACTAAGCTCGCACATAAGTTTTCCCGCTGCAAGA 984
Query 876 CGATAGCTATTCTCTAAATCTGGATCGATCATTTCCACAATGTTTTCTTTTCTATTCTCT 935
|||||||||||||||||||||||||||| || || ||||||||||||||| ||| | |
Sbjct 983 GGATAGCTATTCTCTAAATCTGGATCGATAATCTCTGCAATGTTTTCTTTTCCATTTTGT 924
Query 936 GTTGCTTCCTCTGCTAAGATGATGCACGGGTTTCCCAAACCAGTTAAGATCTCAAATAGT 995
||||||| || ||||| ||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 923 GTTGCTTGCTTTGCTAGGATGATGCACGGGTTTCTCAAACCAGTTAAGATCTCAAGTAGT 864
Query 996 ATAACACCGAAGCTGTATACATCGCCCGCCATGTGTGAT 1034
|||||||||||||||||||||||||| |||||||| |||
Sbjct 863 ATAACACCGAAGCTGTATACATCGCCTGCCATGTGCGAT 825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38504146170
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5