BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25470.1
Length=1198
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894461 jgi|Araly1|894461|Al_scaffold_0006_2457 1131 0.0
> Ahg894461 jgi|Araly1|894461|Al_scaffold_0006_2457
Length=843
Score = 1131 bits (612), Expect = 0.0
Identities = 775/852 (91%), Gaps = 17/852 (2%)
Strand=Plus/Plus
Query 153 ATGTTGCCTAGGAATGCTACTGATAAGATACAAGGAAATGTGAGCAAGCCTTGCTTTTGG 212
|||||||||| || || |||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1 ATGTTGCCTAAGAGTGTTACTGATAAGATTCAAGAAAATGTGAGCAAGCCTTGCTTTTGG 60
Query 213 AAGTCTCTGTCTCCAGGACAAAACTGGAAATCTAAATCCATGAGGAGTTTTCCGGAAGAG 272
|||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 AAGTCTCTTTCTCCAGGACAAAACTGGAAATCTAAATCCATGAGGAGTTTTCCGGCGGAG 120
Query 273 TTTGTGAAAAGCACGCCCGGGGCTTTTGAGCACAGAGTTGTGTTCAGTGTTCGTTGGGGC 332
||||||| |||||||||| || |||| ||||||||||| ||||| |||||||||||||||
Sbjct 121 TTTGTGATAAGCACGCCCAGGTCTTTAGAGCACAGAGTGGTGTTTAGTGTTCGTTGGGGC 180
Query 333 AATTCTTGGCAACTCTGGCTGGAGCGAGAAGAAA-AAGATCTGTTTATGATAGAAGAAGA 391
||||| |||||||| ||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 181 AATTCCTGGCAACTTTGGCTGGAGCGAGAA-AAAGAAGATCTGTTTATGATAGAAGAAGA 239
Query 392 TTGGGATGAGTTTGTGGATGACAACCATTTAGGCCCAAATGATAACGTGTTCTTCAGACA 451
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 240 TTGGGATGAGTTTGTGGATGACAACCATTTAGGCCCAAATGATAACTTGTTCTTCAAACA 299
Query 452 CGATGACAAGATGTTTCTTGAAGTGCAAATCTTTAAGAATGATGGGAACGAGATCATCGA 511
|||| ||| |||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 300 CGATAACACGATGTTTCTTGATGTGCAAATCTTTAAGAATGATGGGAAAGAGATCATCGA 359
Query 512 TGCACCTCCTGAAGTTGAACCTGAAACTGAACCATTTCATCCTACTACACCAAAAAATTC 571
|||||||| ||||||||||||||||| ||||| | |||||||||||||||| || ||||
Sbjct 360 TGCACCTCTTGAAGTTGAACCTGAAATTGAACAACTTCATCCTACTACACCGAAGAATTT 419
Query 572 TCACAAGGAGACAACCACTGCCTCTGCCTCTGCTTCTGCTTCTGAATTTTCAGACAATTG 631
|||||||||||||||| | | ||||||||||||||||||||||| ||||| ||| |
Sbjct 420 TCACAAGGAGACAACC-CA---T--GCCTCTGCTTCTGCTTCTGAATTCTCAGAAAAT-G 472
Query 632 G-CGAGAGACACATGGTTGTGCTGATATCAAAAACCCTGAGCTGTACCTTCTAAACCCCA 690
| | ||||| ||| |||||||||||| |||||||||| ||||| || ||||||||||| |
Sbjct 473 GTCCAGAGAGACAGGGTTGTGCTGATGTCAAAAACCCCGAGCTATATCTTCTAAACCCGA 532
Query 691 AAAACCCTTACTTTGTGAAAACGCTGAC-AAAAGGGAATGACGTTTTGTATGTGCCCAAA 749
|||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||
Sbjct 533 AAAACCCTTACTTTGTGAAAACGCTGTCGAAAAGG-AATGACGTTTTGTATGTGCCCAAA 591
Query 750 ACAGTGATTAAGAAGTATGGCTTGAAGTTTGGTCCCCATTTGTCCCCC-ATGCATTACCT 808
| ||||||||||||||||||||||||||||||||| | | | |||| |||||||||||
Sbjct 592 CCGGTGATTAAGAAGTATGGCTTGAAGTTTGGTCCC-ACTCATTCCCCGATGCATTACCT 650
Query 809 TCTTCCCGGAGATAAAATAAATGGCTCCACTAAGATCTATGGCGGTGGC-AGTGCCCCTT 867
|||||||||||||||||| ||||||| |||||| ||||||| |||||| | ||||||||
Sbjct 651 TCTTCCCGGAGATAAAATCAATGGCTTGACTAAGCTCTATGGTGGTGGCGA-TGCCCCTT 709
Query 868 GTTTCAATGGCTGGGTGGACCTATGTCGAAAGTACAATCTGAAAACCGGAGACTCTATGG 927
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |||
Sbjct 710 GTTTCAATGGCTGGGTGGGTCTATGTCGAAAGTACAATCTGAAAACTGGAGACTCTGTGG 769
Query 928 TTTGTGAACTTGAACGCTCTGGAGAACTGGTTACTGCTGTTAGAGTGCACTTCATCAAT- 986
||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 770 TTTGTGAACTTGAACGCTCAGGAGATCTGGTTACTGCTGTTAGAGTGCATTTCATCAATG 829
Query 987 AAAACATGAGAT 998
|||| |||||||
Sbjct 830 AAAATATGAGAT 841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44718181641
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5