BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25475.4
Length=1234
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489405 jgi|Araly1|489405|fgenesh2_kg.6__2539__AT5G25475.2 1053 0.0
Ahg894461 jgi|Araly1|894461|Al_scaffold_0006_2457 442 3e-123
> Ahg489405 jgi|Araly1|489405|fgenesh2_kg.6__2539__AT5G25475.2
Length=946
Score = 1053 bits (570), Expect = 0.0
Identities = 705/769 (92%), Gaps = 14/769 (2%)
Strand=Plus/Plus
Query 364 GAGGATAATTCCGGAAGACTTTGTGAGAAGAACGCGTGGTGCTTTTGAGCACAGAGTGGT 423
|||||| ||||| ||||| ||||||||||| |||| ||| ||||||||||||||||||||
Sbjct 188 GAGGATTATTCCAGAAGAGTTTGTGAGAAGCACGCCTGGGGCTTTTGAGCACAGAGTGGT 247
Query 424 GTTTAGTGTTCGTTGGGAAAACTCCTGGCAACTCTGGCTGGAGCGAGAGAAGAACGAGCT 483
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 248 CTTTAGTGTTCGTTGGGAAAATTCCTGGCAACTCTGGCTGGAGCGAGAGAAGAACGAGCT 307
Query 484 GTTTATGATAGAAGAAGATTGGAATGAGTTTGTAGACGACAATCATTTAGGTCCAAATGA 543
||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 308 GTTTATGATAGAAGAGGATTGGAATGAGTTTGTAGATGACAATCACTTAGGTCCAAATGA 367
Query 544 TAATCTGTTCATCAAACACGATGAGACGATGAATCTTGAAGTGCAAATCTTTAAGAATAA 603
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 TAATCTGTTCTTCAGGCACGATGAGACGATGAATCTTGAAGTGCAAATCTTTAAGAATAA 427
Query 604 TGGGGTTGAGATCATTGATGTACCTCTTGGAGTTGAACCCGAAACTGAACCATTTCATCC 663
||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 428 TGGGGACGAGATCATCGATGTACCTCTTGAAGTTGAACCCGAAACTGAACCATTTCATCC 487
Query 664 TACGCCCAAGAAACCTCACAAGGAGACAACCCCTGCCTCTTCCTTTGCCTCTGGCTCTGG 723
|||||||||||||||||||| ||||||||||||||||||| ||| || ||| | |||
Sbjct 488 TACGCCCAAGAAACCTCACAGGGAGACAACCCCTGCCTCTGCCTCTG--TCT---T-TGG 541
Query 724 CTGCTCTGCAAATGGAGGGACAAATGGCCGAGGAAAACAACGTTCTAGTGATGTCAAAAA 783
| |||||||||||||||| |||||| ||||||||| ||| ||||||| ||||||||||||
Sbjct 542 CGGCTCTGCAAATGGAGGAACAAATAGCCGAGGAAGACAGCGTTCTAATGATGTCAAAAA 601
Query 784 CCCTGAGCGATACCTCTTGAATCCTGAAAACCCTTACTTTGTGCAAGCGGTGACAAAAAG 843
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 602 CCCTGAGCGATACCTCTTGAATCCCGAAAACCCTTACTTTGTGCAAGCGGTGACAAAAAG 661
Query 844 GAACGACGTTCTGTATGTGAGCCGACCGGTGGTTCAGA-GCTATCGCTTGAAGTTTGGTC 902
||| |||||||||||||| ||||||||||| ||||||| | ||| ||||||||||||||
Sbjct 662 GAATGACGTTCTGTATGTAAGCCGACCGGTAGTTCAGATG-TATAACTTGAAGTTTGGTC 720
Query 903 CCGTTAAGTCCACCATTACCTATCTTCTTCCCGGGGAGAAAAAA-GAGGAAGGCGAGAA- 960
| |||||||||||||||||||| ||||||||||||| ||||||| |||||||| || ||
Sbjct 721 CGGTTAAGTCCACCATTACCTACCTTCTTCCCGGGG-GAAAAAAAGAGGAAGGTGA-AAC 778
Query 961 TA-GAATCTATAACGGGAAACCTTGTTTCAGTGGCTGGTCGGTTCTATGTCGGAGGCACA 1019
|| || |||| |||||| |||||||||||||||| ||||||||||||||||| |||||||
Sbjct 779 TAAGA-TCTACAACGGGCAACCTTGTTTCAGTGGATGGTCGGTTCTATGTCGAAGGCACA 837
Query 1020 ATCTGAATATCGGAGACTCCGTGGTTTGTGAACTTGAACGCTCCGGTGGTGTGGTTACCG 1079
||||||| ||||||||||| |||||||||||||||||||||| |||||| ||||| | |
Sbjct 838 ATCTGAAAATCGGAGACTCGGTGGTTTGTGAACTTGAACGCTGTGGTGGTCTGGTTGCGG 897
Query 1080 CTGTAAGAGTGCATTTCGTCAAGAAAGACTAGACCAATCCTCTCTAGTA 1128
|||| ||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 898 CTGTTAGAGTGCATTTCGTCAATAAAGACTAGACCATTCCTCTCTAGTA 946
Score = 222 bits (120), Expect = 4e-57
Identities = 155/172 (90%), Gaps = 2/172 (1%)
Strand=Plus/Plus
Query 68 CTGCGACGGAGCGTGAAGTTCACGCTCCGGCGGTACTACCTAAGAACTGATCCAGCTTTG 127
||| ||||| ||||||| |||||||||||| | ||| |||||||||||| ||||||||||
Sbjct 18 CTGTGACGGTGCGTGAACTTCACGCTCCGGTGATACCACCTAAGAACTGGTCCAGCTTTG 77
Query 128 AAAAGAAAAATGTTGCCTAAGAATGCTATTGAGAAGATCCAAGCAAATGTGAGCAAGCCT 187
|| |||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||
Sbjct 78 AAGAGAAAAATGTTGCCCAAGGGTGCTATTGATAAGATCCAAGCAAATGTGAGCAAGCCT 137
Query 188 TGCTTCTGGAAGTCTCTCTCTCCAGGACA-AACTTGGAAATCTAAATCCATG 238
|||||||||||||||||||| |||||||| || |||||||||||| |||||
Sbjct 138 TGCTTCTGGAAGTCTCTCTCCCCAGGACAGAA-TTGGAAATCTAAGCCCATG 188
> Ahg894461 jgi|Araly1|894461|Al_scaffold_0006_2457
Length=843
Score = 442 bits (239), Expect = 3e-123
Identities = 598/761 (79%), Gaps = 65/761 (9%)
Strand=Plus/Plus
Query 372 TTCCGGAAGACTTTGTGAGAAGAACG-CGTGGTGCTTTTGAGCACAGAGTGGTGTTTAGT 430
|||||| || ||||||| ||| ||| | ||| |||| |||||||||||||||||||||
Sbjct 110 TTCCGGCGGAGTTTGTGATAAGCACGCCCAGGT-CTTTAGAGCACAGAGTGGTGTTTAGT 168
Query 431 GTTCGTTGGGAAAACTCCTGGCAACTCTGGCTGGAGCGAGAGAA-GAACGAGCTGTTTAT 489
|||||||||| || ||||||||||| |||||||||||||| || ||| || ||||||||
Sbjct 169 GTTCGTTGGGGCAATTCCTGGCAACTTTGGCTGGAGCGAGAAAAAGAA-GATCTGTTTAT 227
Query 490 GATAGAAGAAGATTGGAATGAGTTTGTAGACGACAATCATTTAGGTCCAAATGATAATCT 549
|||||||||||||||| |||||||||| || ||||| |||||||| ||||||||||| ||
Sbjct 228 GATAGAAGAAGATTGGGATGAGTTTGTGGATGACAACCATTTAGGCCCAAATGATAA-CT 286
Query 550 -GTTCATCAAACACGATGAGACGATGAATCTTGAAGTGCAAATCTTTAAGAATAATGGGG 608
|||| ||||||||||| | |||||| |||||| |||||||||||||||||| |||||
Sbjct 287 TGTTCTTCAAACACGATAACACGATGTTTCTTGATGTGCAAATCTTTAAGAATGATGGGA 346
Query 609 TTGAGATCATTGATGTACCTCTTGGAGTTGAACCCGAAACTGAACCATTTCATCCTACG- 667
|||||||| |||| |||||||| ||||||||| |||| ||||| | ||||||||||
Sbjct 347 AAGAGATCATCGATGCACCTCTTGAAGTTGAACCTGAAATTGAACAACTTCATCCTACTA 406
Query 668 C-CC-AAGAAACCTCACAAGGAGACAACCCCTGCCTCTTCCTT-TGCCTCTGGCTCTGGC 724
| || ||||| ||||||||||||||||| ||||||| | || ||| | | || |
Sbjct 407 CACCGAAGAATTTTCACAAGGAGACAACCCATGCCTCTGC-TTCTGC-T-T--CT--GAA 459
Query 725 TGCTCTGCAAATGGAGGGACAAATGG-CC-GAGGAAAACAACGTTCTAG-TGATGTCAAA 781
| ||| || | | | || ||| || ||| | | || ||| | | ||||||||||
Sbjct 460 T--TCT-CA---G-A---A-AA-TGGTCCAGAG-AGA-CAGGGTTGT-GCTGATGTCAAA 504
Query 782 AACCCTGAGCGATACCT-CTTGAATCCTGAAAA-CCCTTACTTTGTGCAAGCGGTGACAA 839
||||| |||| ||| || || || || ||||| ||||||||||||| || || || | |
Sbjct 505 AACCCCGAGCTATATCTTCTA-AACCC-GAAAAACCCTTACTTTGTGAAAACGCTGTCGA 562
Query 840 AAAGGAACGACGTTCTGTATGTGAGCCGA-CCGGTGGTTCAGA-GCTATCGCTTGAAGTT 897
||||||| |||||| |||||||| || | |||||| || ||| | ||| ||||||||||
Sbjct 563 AAAGGAATGACGTTTTGTATGTGC-CCAAACCGGTGATTAAGAAG-TATGGCTTGAAGTT 620
Query 898 TGGTCCCGTTAAGTCCACC-ATTACCT-ATCTTCTTCCCGGGGAGAAAAAAGAGGAA-GG 954
||||||| | | ||| || || | | | ||||||||||| ||| |||| || ||
Sbjct 621 TGGTCCCACTCATTCC-CCGATG-CATTACCTTCTTCCCGG--AGATAAAATC--AATGG 674
Query 955 CGAGAATA-GAATCTATAACGG-GAA-A--CC--TTGTTTCAGTGGCTGG-TCGGTTCTA 1006
| || || | ||||| || | | || |||||||| ||||||| | ||| |||
Sbjct 675 CTTGACTAAGC-TCTATGGTGGTGGCGATGCCCCTTGTTTCAATGGCTGGGTGGGT-CTA 732
Query 1007 TGTCGGAGGCACAATCTGAATA-TCGGAGACTCCGTGGTTTGTGAACTTGAACGCTCCGG 1065
||||| | | |||||||||| | | |||||||| ||||||||||||||||||||||| ||
Sbjct 733 TGTCGAAAGTACAATCTGAAAACT-GGAGACTCTGTGGTTTGTGAACTTGAACGCTCAGG 791
Query 1066 TGGTGTGGTTACCGCTGTAAGAGTGCATTTCGTCAA-GAAA 1105
| | ||||||| ||||| |||||||||||| |||| ||||
Sbjct 792 AGATCTGGTTACTGCTGTTAGAGTGCATTTCATCAATGAAA 832
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46090606653
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5