BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25480.1
Length=1411
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489406 jgi|Araly1|489406|fgenesh2_kg.6__2540__AT5G25480.1 1901 0.0
> Ahg489406 jgi|Araly1|489406|fgenesh2_kg.6__2540__AT5G25480.1
Length=1271
Score = 1901 bits (1029), Expect = 0.0
Identities = 1192/1272 (94%), Gaps = 5/1272 (0%)
Strand=Plus/Plus
Query 27 AAATTAATTTTGCTTAAGCAG--CAGCAGAAGAAGAA-GCATGGCGGAACAAGAATTACA 83
|||||||||||| |||||||| || |||||||||| |||||||||| ||||||| ||
Sbjct 1 AAATTAATTTTGTTTAAGCAGAAAAGAAGAAGAAGAATCCATGGCGGAAGAAGAATTGCA 60
Query 84 GAGAATCAATGAGAAGAAGCCATGGC-AAGTTCTCGAGTTCTACAGTGGAATCGGTGGAA 142
||||||| |||||||||||||||||| || ||||||||||||| ||||||||||||||||
Sbjct 61 GAGAATCGATGAGAAGAAGCCATGGCGAA-TTCTCGAGTTCTATAGTGGAATCGGTGGAA 119
Query 143 TGAGATACTCTTTAATGGCGTCAGGCATCGTCTCAGAAGTAGTAGAAGCTTTTGAGATCA 202
||||||||||||| |||||||||||| | || |||||||||||||||||||||||||| |
Sbjct 120 TGAGATACTCTTTGATGGCGTCAGGCGTTGTTTCAGAAGTAGTAGAAGCTTTTGAGATTA 179
Query 203 ATGATTCTGCTAATGATGTTTATCAACATAATTTCAAACATCGTCCCTATCAGGGGAATA 262
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 180 ATGATTCTGCTAATGATGTTTATCAACATAATTTCAAACATCGTCCTTATCAGGGAAATA 239
Query 263 TTCAGAGTCTCACTGCTGCTGATTTAGATAAGTATAATGCAGATGCTTGGCTTCTTTCTC 322
|||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||
Sbjct 240 TTCAGAGTCTCACTGCTGTTGACTTAGATAAGTATAATGCAGATGCATGGCTTCTTTCTC 299
Query 323 CTCCTTGTCAACCTTATACTAGACAAGGCCTTCAGAAACACTCTGGTGATGCTCGGGCTT 382
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 300 CTCCTTGTCAACCTTATACTCGACAAGGCCTTCAGAAACAGTCTGGTGATGCTCGGGCTT 359
Query 383 TTTCGTTTCTCAGGATTCTTGAGCTTATACCGCATACAACAAAGCCTCCACAAATGTTAT 442
||||||||||||||||||| ||||||||||||||||| | ||||||||||| ||||| |
Sbjct 360 TTTCGTTTCTCAGGATTCTCGAGCTTATACCGCATACGTCTAAGCCTCCACAGATGTTGT 419
Query 443 TTGTAGAGAATGTTGTTGGATTTGAGACTTCGGATACACATATGGAAATGATTGGTACAT 502
|||||||||| |||||||| ||||||||||| ||||| |||||||||||||||| ||| |
Sbjct 420 TTGTAGAGAACGTTGTTGGGTTTGAGACTTCAGATACTCATATGGAAATGATTGATACGT 479
Query 503 TAACAAAATTAGATTATGTCACACAAGAGTTTATATTGAGTCCGCTGCAGTTTGGTGTGC 562
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 480 TAACAAAATTAGATTATGTCACACAAGAGTTTATTTTGAGTCCGTTGCAGTTTGGTGTGC 539
Query 563 CGTATTCAAGACCACGTTATTTCTGCCTGGCCAAAAGAAAACCTCTGCCATTTAAGTCCC 622
|||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||
Sbjct 540 CGTATTCAAGACCACGTTATTTTTGCTTGGCCAAAAGAAAGCCTCTGCCATTTAAGTCCC 599
Query 623 AACACAGTAATAACAAACTACTCTGGTCTCCAGACCCGTTATATGGGCGTGATGATCAGG 682
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 600 AACACAGTAATAACAAACTACTCTGGTCTCCAGGCCCGTTATATGGGTGTGATGATCAGG 659
Query 683 TTGAGTTTGGAAAATGTCAAGCAGAAGAAGGATTGGATAAATTACTTGAGTTTTGCAAAC 742
| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 660 TGGAGTTTGGAAAATGTCAAGCAGAAGAAGGATTGGATAAATTACTTCAGTTTTGCGAAC 719
Query 743 CAGTAGAGAAGTTTCTCGAGTTAGCTGCACATGTTGATGGCGAGCCAAGTAGTGTTGATG 802
||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||
Sbjct 720 CAGTAGAGAAGTTTCTCGAGTCAGCTGCACATGTTGAAGGCGAGCCAAGTAGTGTTGATG 779
Query 803 ACTCTGAAAATGGGTCCAAAGATTGTTGTGGACAAGAAGGCGATTCTGTCCCAGACTCTG 862
||||||| ||||||||||||||||| | ||||||||||| ||||||||| ||||||||||
Sbjct 780 ACTCTGAGAATGGGTCCAAAGATTGCTATGGACAAGAAGACGATTCTGTGCCAGACTCTG 839
Query 863 TACATCAGTATCTAGTACCAGTTAGTTTGATAGAGAGATGGGGAAACGCAATGGACATTG 922
| ||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 840 TTCATCAATATCTAGTACCAGTAAGTTTGATAGAGAGATGGGGAAACGCAATGGATATTG 899
Query 923 TTTACCCTGATTCAAAGAGATGTTGTTGTTTCACAAAGAGTTATTATCGATACGTGAAGG 982
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TTTACCCTGATTCAAAGAGATGTTGTTGTTTCACAAAGAGTTATTATCGATACGTGAAGG 959
Query 983 GCACAGGTTCCCTATTGGCAACTGTCCAGCCAAAAATCAAGGGTAAGGAATCTTGTTTGA 1042
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 960 GCACTGGTTCCCTATTGGCAACTGTTCAGCCAAAAATCAAGGGTAAGGAATCTTGTTTGA 1019
Query 1043 AGGAGCAACGGCTTAGATACTTCACCCCTAGAGAGGTAGCTAACTTTCACTCATTCCCTG 1102
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1020 AGGAGCAGCGGCTTAGATACTTCACCCCAAGAGAGGTAGCTAACTTTCACTCATTCCCTG 1079
Query 1103 AAGATTTTGAGTTCCCCAAGCACATAAGCCTTCGACAAAGATACGCAATGCTTGGAAACA 1162
|||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1080 AAGATTTTGAGTTCCCAAAGCACATAAGCCTTCGACAGAGATATGCAATGCTTGGAAACA 1139
Query 1163 GTTTAAGTGTAGCAGTGGTGGCTCCTCTGCTTCGGTATCTATTCGATTCTTGACTACACA 1222
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
Sbjct 1140 GTTTAAGTGTAGCAGTCGTGGCTCCTCTGCTTCGGTATCTATTCGATTCTTGACTGCAAA 1199
Query 1223 ATTTGATGCACTAAGTGACGCGACCAATTACCGGAATCAGTTATTCTCCTGAACAAGCTT 1282
| | || ||| |||||||||| |||||||||| ||| ||| ||||| || ||||||||||
Sbjct 1200 ACTGGAAGCAGTAAGTGACGCTACCAATTACCTGAACCAGCTATTCGCCCGAACAAGCTT 1259
Query 1283 CTACTACTTTTT 1294
|| |||| ||||
Sbjct 1260 CTCCTACGTTTT 1271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52754989325
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5