BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G25490.1

Length=861
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg489407 jgi|Araly1|489407|fgenesh2_kg.6__2541__AT5G25490.1         773    0.0  


> Ahg489407 jgi|Araly1|489407|fgenesh2_kg.6__2541__AT5G25490.1
Length=731

 Score =  773 bits (418),  Expect = 0.0
 Identities = 490/524 (94%), Gaps = 8/524 (2%)
 Strand=Plus/Plus

Query  50   AGAAGAAGATGAATAGGCCGGGAGATTGGAACTGCAGATTGTGTAGCCACCTCAACTTCC  109
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  1    AGAAGAAGATGAATAGGCCGGGAGATTGGAACTGCAGATCGTGTAGCCACCTCAACTTCC  60

Query  110  AGAGGAGGGATTCATGCCAACGTTGTAGAGAGCCTAGACCGGGCGGGATCAGTACCGATT  169
            | |||||||||||||||||||||||||||||||||||||||||||| |||||||| || |
Sbjct  61   AAAGGAGGGATTCATGCCAACGTTGTAGAGAGCCTAGACCGGGCGGCATCAGTACTGACT  120

Query  170  TACTCAGCGGTTTTGGTGGCCGTCCGGTTAGTAGCTCCTTCGGTTTCAACACCGGGCCCG  229
            ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  121  TACTCGGCGGTTTTGGTGGCCGTCCGGTTAGTAGCTCCATCGGTTTCAACACCGGGCCCG  180

Query  230  ATGTGCGACCCGGGGATTGGTATTGCAACCTTGGGGA-TTGTGGGACACATAATTTTGCC  288
            | ||| ||||||| |||||||||||||||||| |||| ||| ||| ||||||||||||||
Sbjct  181  ACGTGAGACCCGGTGATTGGTATTGCAACCTT-GGGAGTTGCGGGGCACATAATTTTGCC  239

Query  289  AATAGGTCCAGTTGTTTCAAGTGTGGTGCCGCAAAAGATGAGTTTTCATGCTCAAGTGCT  348
            |||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||||
Sbjct  240  AATAGGTCCAGTTGTTTCAAGTGTGGTGCCGCCAAAGATGAGTTTTCAAGTTCAAGTGCT  299

Query  349  GCTGCAACAACCGGGTTTATGGACATGAATGTTGGTCCGAGACGTGGCCTTTTTGGTTTT  408
            |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct  300  GCTGCAACAACCGGGTTTATAGACATGAATGTTGGTCCAAGACGTGGCCTTTTTGGTTTT  359

Query  409  GGCGGCAGCAGTAGTGGTGGTGGTGGTACGGGCCGTTCTCCTTGGAAATCTGGAGATTGG  468
               |||||||| ||||||||  | || || ||||||||||||||||||||||||||||||
Sbjct  360  ---GGCAGCAGCAGTGGTGGCAGCGGCACAGGCCGTTCTCCTTGGAAATCTGGAGATTGG  416

Query  469  ATTTGCCCAAGGTCAGGCTGTAACGAACATAACTTCGCAAGCAGGTCAGAGTGTTTCAGG  528
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  417  ATTTGCCCAAGGTCAGGCTGCAACGAACATAACTTCGCAAGCAGGTCAGAGTGTTTCAGG  476

Query  529  TGTAACGCACCAAAGGAACTTGCCACCGAACCACCCTATTAGTC  572
            ||||||||||||||  | || ||||| |||||||||||||||||
Sbjct  477  TGTAACGCACCAAA--ACCT-GCCACTGAACCACCCTATTAGTC  517



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 31870758612


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5