BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25500.1
Length=1680
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942123 jgi|Araly1|942123|scaffold_602667.1 1960 0.0
Ahg489409 jgi|Araly1|489409|fgenesh2_kg.6__2543__AT5G25510.1 124 2e-27
> Ahg942123 jgi|Araly1|942123|scaffold_602667.1
Length=1303
Score = 1960 bits (1061), Expect = 0.0
Identities = 1222/1301 (94%), Gaps = 6/1301 (0%)
Strand=Plus/Plus
Query 238 CACTAAGCTGATTTTCAAATGTGGGTTAATGGGTATCATCAAATAAGAATACATCTAAAC 297
|||| ||||| |||||||||||||||||||||||||||||||||||||| || ||||| |
Sbjct 3 CACTTAGCTGCTTTTCAAATGTGGGTTAATGGGTATCATCAAATAAGAAGACTTCTAATC 62
Query 298 TCTGAAC-TCAGTTTCAAG-GCAAATCCAAGTCGCTTCTTCCGTTCATTCCAGGTTTTGT 355
|||| || || ||||| || |||||||| ||||||||||||| ||| ||||||||||||
Sbjct 63 TCTG-ACATCTGTTTC-AGAGCAAATCCGAGTCGCTTCTTCCAATCAATCCAGGTTTTGT 120
Query 356 ATCATCCTTCAGTTGATTCATATGAAGATGTATTGCCTCATGAATGGTACGAAACGAAAC 415
||||| ||||||||||||| | ||||||| ||||||| |||||||||||| ||||||
Sbjct 121 ATCATTCTTCAGTTGATTCCTTTGAAGATACATTGCCTTGTGAATGGTACGAGTCGAAAC 180
Query 416 TCCCAGTTCTGAAGAAACTAAACCGTGCGTTGAGAGATGTTGATTTAGTCGACGGAAAGC 475
|| |||||||||| ||||||| |||||| |||| |||||| ||||||||||| || ||||
Sbjct 181 TCACAGTTCTGAAAAAACTAAGCCGTGCATTGAAAGATGTCGATTTAGTCGATGGGAAGC 240
Query 476 TAGAGGACATCAATGGTGTCATCGTTTATGATGATGGTATCACAAAGAAAATGCAAGCAT 535
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
Sbjct 241 TAGAGGACATCAATGGTGTCATCATTTATGATGATGGTATCAAAAAGAAAATGCAAGCCT 300
Query 536 TTAAATCTCTAGCTAGAATCTTTATTGGGTCTCCTTCAATTCAGCAGAAGCTTAGAGAAG 595
|||| ||||| |||||||| ||| |||| ||||||||||||||| ||||||| |||||||
Sbjct 301 TTAAGTCTCTGGCTAGAATGTTTGTTGGTTCTCCTTCAATTCAGAAGAAGCTCAGAGAAG 360
Query 596 AGGGACGGTTCAAGTTCCCATTTTTTGGGAGTGAAAGTGAAAGAGAGCCATTGGTGGTGA 655
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AGGGAAGGTTCAAGTTCCCATTTTTTGGGAGTGAAAGTGAAAGAGAGCCATTGGTGGTGA 420
Query 656 ATTCATTGACTAAAGTTTGCAACTTTCTCAACGTCTCGGCGCAACAGAGGAAGCTAGTGA 715
||||||||||||||||| |||||||||| || ||||||||||||||| ||||||||||||
Sbjct 421 ATTCATTGACTAAAGTTAGCAACTTTCTTAATGTCTCGGCGCAACAGCGGAAGCTAGTGA 480
Query 716 GGAGCACTGTGTGTTCACAGGTAACGCAGTATCGTATATGGAGAGGTACTCTTGAAGATA 775
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 GGTGCACTGTGTGTTCACAGGTAACGCAGTATCGTATATGGAGAGGTGCTCTTGAAGATA 540
Query 776 TATTGAATGGTCTTAAAGAAGAAGTTGATTGGTTAGTTGAACATAGAGAGATGAGTCAAG 835
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 541 TATTGAATGGTCTTAAAGATGAAGTTGATTGGTTAGTTGAACATAGAGAGGTGAGTCAAG 600
Query 836 GTAGAGTATTGGCTCAGCAAGTGATATTGTCTTGCCTCAGATTCTTATCTGAATCATCAG 895
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 601 GTAGAGTATTGGCTCAGCAAGTGATATTGTCTTGCCTCAGATTCTTATCTGAATCATCGG 660
Query 896 TTTCATTTGAAGTCGAGAAATCAACTTCTTGGATGCGGCCTGTGCCAGCTAGATATGCGA 955
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTTCATTTGAAGCCGAGAAATCAACTTCTTGGATGCGGCCTGTGCCAGCTAGATATGCGA 720
Query 956 AAGCTAATGCTTCTGCGAAATGGGAAGATGTACTTGATATGGTGAATGATCTGAGAAGGT 1015
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 721 AAGCTAATGCTTCTGCGAAATGGGAAGATGTTCTTGATATGGTGAATGATCTAAGAAGGT 780
Query 1016 ATCTTGAACATGATGAAGAAATCACAGTACTTTACCATCTGGATAAGCTTGTATCGATGA 1075
|||||||||||||||||||||| || |||||||| ||| |||| ||||||||||||||||
Sbjct 781 ATCTTGAACATGATGAAGAAATTACTGTACTTTATCATTTGGAAAAGCTTGTATCGATGA 840
Query 1076 AAGAAGGGCTTTTGCAGATCAAAGATGTGTTTTTAGACAACACTATTGGATTCAGAGAGG 1135
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 841 AAGAAGGGCTTTTGCAGATCAAAGATGTGTTTTTGGACAACACTATTGGATTTAGAGAGG 900
Query 1136 TTAGACATCAAGAGCACCTTGTGTACAGAAAGCTCTCAAAGCTGTTGGGCAGTCCATCAC 1195
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| || |
Sbjct 901 TTAGACATCAAGAGCACCTTGTGTACAGAAAACTCTCAAAGATGTTGGGCAGTCCTTCGC 960
Query 1196 CGTGTTTGTT-TGCTCTCGTCATGTATTTCCTCTATGGCCGTGTGCGTGACATCGAAGTT 1254
| |||||||| | ||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 961 CTTGTTTGTTCT-CTCTCGTCATGTATTTCCTCTATGGCCGTGTGCGTGATATTGAAGTT 1019
Query 1255 GATCTCTGTGGAGGGTTTTACAAGGAGAAGAGCGAGTTCTTGTGCTTAAGTATGGGGAGG 1314
||| ||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 1020 GATGTCTGTGGTGGGTTTTACAAGGAGAAGGGCGAGTTCTTGTGCTTAAGCATGGGGAGG 1079
Query 1315 ATCTTGACTTCAACGGATGAGAAAATGTTGGAGAGAGGGATGAAGCAGTTAGATAGGGCA 1374
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 ATCTTGACTTCAACGGATGAGAAAATGTTGGAGAGAGGGATGAAGCAGTTAGATAGGGCA 1139
Query 1375 TTGGGTCTCTTTGAGTTTGTGTGGGAAACAGCAGGAATGAAAGAGACTCTTAACCTACAA 1434
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1140 TTGGGCCTCTTTGAGTTTGTGTGGGAAACAGCAGGAATGAAAGAGACTCTTAACCTGCAA 1199
Query 1435 GGCCATTTGTGGTGCCTTGGAGCTGAAGAAAGATCCATCACATATCGTGGGAAGACGTTC 1494
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1200 GGCCATTTGTGGTGCCTTGGAGCTGAAGAAAGGTCCATCACATATCGTGGGAAGACGTTC 1259
Query 1495 TTCGTGCATGACCTTAGTCTCTGAAGTTTTGTGAGGTACAA 1535
|||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1260 TTCGTGCATGACCTTAGTCTATGAAGTTTTGTGAGGAACAA 1300
> Ahg489409 jgi|Araly1|489409|fgenesh2_kg.6__2543__AT5G25510.1
Length=1987
Score = 124 bits (67), Expect = 2e-27
Identities = 74/77 (96%), Gaps = 2/77 (3%)
Strand=Plus/Minus
Query 1606 GAAAGAAAAAGGATATATAAACTTAATTGATTGATACAAAGAGTTTGATAAAAA--TCTG 1663
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 1987 GAAAGAAAAAGGATATATAAACTTAATTGATTGATACAAAGAGTTTGATAAAAAAATATG 1928
Query 1664 CAGCATGGTTTCATTGC 1680
|||||||||||||||||
Sbjct 1927 CAGCATGGTTTCATTGC 1911
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63001265230
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5