BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25510.1
Length=2153
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489409 jgi|Araly1|489409|fgenesh2_kg.6__2543__AT5G25510.1 2964 0.0
> Ahg489409 jgi|Araly1|489409|fgenesh2_kg.6__2543__AT5G25510.1
Length=1987
Score = 2964 bits (1605), Expect = 0.0
Identities = 1850/1964 (94%), Gaps = 34/1964 (2%)
Strand=Plus/Plus
Query 203 ttttttttttctctctctctctctctctAGGAATGTTTTTGTTCGTGGATACTGGAATCA 262
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 45 TTTTTTTTTTCTCTCTCTCTCTATCTCTAGGAATGTTTTTGTTCGTGGAAACTGGAATCA 104
Query 263 TGAGAATAAGATTTTGAAGGAGAAAGCAAGATCCATGTTCTTTGTCGGAGAATTTAGGGC 322
||||| |||||||||||||||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 105 TGAGATTAAGATTTTGAAGGAGAAAGCAGGATCCATGTTC-TTGTCAGAGAATTTAGGGC 163
Query 323 TAATATGTGGATTTGAGCTTCTTTGATTCCCAATTTGTGAAAGTTTTGAAATTTTTGGGA 382
| | | | | |||| | ||||| | |||||||||||||||||| |||||||
Sbjct 164 T-CT-T-T-G-TTTG-G---ATTTGA---GCTTTTTGTGAAAGTTTTGAAA--TTTGGGA 209
Query 383 AAGAGAGAATGTTTAAGCAGTTTCTGAGTAAACTTCCGAGGAAGTCTTCAAAATCTGATT 442
|| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 210 AA-AGA-TATGTTTAAGCAGTTTCTAAGTAAACTTCCGAGGAAGTCTTCAAAATCTGATT 267
Query 443 CAGGAGAGCTGAATCGTTCGAGTTCGGGTCCGGTATCGTCTCCGGTTCAGAGATCCGGTA 502
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 268 CTGGAGAGCTGAATCGTTCGAGTTCAGGTCCGGTATCGTCTCCGGTTCAGAGATCCGGTA 327
Query 503 CTAGTGGTGGTGGTTCGGGTCCGGTTCGATCTAACTCAGGGAAGCGTATGTCATCTGCTG 562
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 328 CTA---GTGCAGGTTCGGGTCCGGTTCGATCTAACTCAGGGAAGCGTATGTCATCTGCTG 384
Query 563 TGTTCCCAGCTAGTGTTGTTGCTGGTATTGAGCCTTTGGTACCGTTTAAGGATGTACCAA 622
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 385 TGTTCCCAGCTAGTGTTGTTGCTGGGATTGAGCCTTTGGTACCGTTTAAGGATGTACCAA 444
Query 623 GCTCTGAGAAGTTGAATCTCTTTGTGAGTAAAGTTAGTCTCTGTTGTGTGACATTTGATT 682
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 445 GCTCTGAGAAATTGAATCTCTTTGTGAGTAAAGTTAGTCTCTGTTGTGTGACGTTTGATT 504
Query 683 TCTCTGACCCTGGTAAAAACTCTATAGAGAAAGATGTTAAAAGGCAGACATTGTTGGAGC 742
|||| ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 505 TCTCCGACCCCGGTAAAAACTCGATTGAGAAAGATGTTAAAAGGCAGACATTGTTGGAGC 564
Query 743 TTTTGGATTTTGTAGCTTCAGGGTCTGTTAAGTTCACTGAGCCAGCTATTCTTGCAATGT 802
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 565 TTTTGGATTTTGTAGCTTCAGGGTCTGTTAAGTTTTCTGAGCCAGCTATTCTTGCAATGT 624
Query 803 GTAGAATGTGTGCTGTTAATCTCTTTAGGGTCTTTCCTCCGAATTATCGGTCTAGTTCTG 862
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 625 GTAGAATGTGTGCTGTTAATCTGTTTAGGGTCTTTCCTCCGAATTATCGGTCTAGTTCGG 684
Query 863 GTGGCGAAAACGATGATGATGAACCGATGTTTGACCCTGCTTGGCCTCATTTGCAGATTG 922
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 685 GTGGTGAAAACGATGATGATGAGCCGATGTTTGACCCTGCTTGGCCTCATTTGCAAATTG 744
Query 923 TGTATGATTTGTTGCTTAAGTTTATCACTTCTCCGTGTCTTGATGCTAAAGTGGCAAAAA 982
||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||| |
Sbjct 745 TGTATGATTTGCTGCTTAAGTTTATTACTTCTCCGTGTCTTGATGCTAAATTGGCAAAGA 804
Query 983 AGTATTTAGATCATGCTTTCATTGTGAGGTTGCTTGACTTGTTTGATTCGGAGGATCCTA 1042
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 805 AGTATTTAGATCATGCTTTTATTGTGAGGTTGCTCGACTTGTTTGATTCGGAGGATCCTA 864
Query 1043 GAGAACGGGAGTGTTTGAAGACGATTCTGCATCGGGTATATGGGAAGTTCATGGTTCATA 1102
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 865 GAGAACGGGAGTGTTTGAAGACGATTCTGCATCGGGTGTATGGGAAATTCATGGTTCATA 924
Query 1103 GGCCATTTGTACGCAAGTCCATGAGCAATATATTCTACCGGTTTGTGTTTGAGACAGAGA 1162
|||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 925 GGCCGTTTGTACGCAAGTCCATGAGTAATATATTCTACCGGTTTGTGTTTGAGACAGAGA 984
Query 1163 AGCATAGCGGAATCGCTGAGCTTTTGGAGATTTTCGGGAGTATAGTGAGTGGATTTGCGT 1222
|||||||||||||||| |||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 985 AGCATAGCGGAATCGCAGAGCTTTTGGAGATTTTCGGGAGTATTGTGAGCGGATTTGCAT 1044
Query 1223 TGCCTTTGAAAGAAGAGCATAAGATCTTCTTGTGGAGAGTGTTGATTCCATTGCACAAGC 1282
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 TGCCTTTGAAAGAGGAGCACAAGATCTTCTTGTGGAGAGTGTTGATTCCATTGCACAAGC 1104
Query 1283 CTAAATCTGTTGGAAACTACTTTCAGCAGCTTTCTTATTGTATCACTCAGTTCATAGATA 1342
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 1105 CTAAATCTGTTGGAAACTACTTCCAGCAGCTTTCTTATTGCATCACTCAGTTCATAGATA 1164
Query 1343 AAGAGCCGAAACTAGGCAGTGTTGTGATAAAGGGTTTGTTGAAGTTCTGGCCTATCACGA 1402
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1165 AAGAGCCGAAACTTGGCAGTGTTGTGATAAAGGGTTTGTTGAAGTTCTGGCCTATCACGA 1224
Query 1403 ATAGTCAGAAGGAAGTGATGTTTCTCGGGGAGGTCGAAGAAATTGTAGAAGCAATGAGTG 1462
| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1225 ACAGCCAGAAGGAAGTGATGTTTCTCGGGGAGGTCGAAGAGATTGTAGAAGCAATGAGCG 1284
Query 1463 TGATGGAGTTTCAAAAGATCATGGTCCCTTTGTTCTTGCGGATTGCTTGTTGTGTCACCA 1522
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1285 TGATGGAATTTCAAAAGATCATGGTTCCTTTGTTCTTGCGGATTGCTTGTTGTGTCACCA 1344
Query 1523 GTTCCCACTTTCAGGTTTCTGAAAGAGCTTTATTCTTGTGGAACAACGATCAAATTGTAA 1582
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1345 GTTCCCACTTTCAGGTTTCTGAAAGAGCTTTATTCTTGTGGAACAACGATCAAATTGTGA 1404
Query 1583 ACTTGATTGGACATAACCGGCAAGCCATCCTACCAATCATGTTCACTGCTTTAGAAAAGA 1642
||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1405 ACTTGATTGGACACAACCGGCAAGCCATCCTACCAATCATGTTCACTGCCTTAGAAAAGA 1464
Query 1643 ATGCTCAGAACCACTGGAACCAATCCGTGCTAAACTTAACCTTAAACGTACGAAAAATGT 1702
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1465 ATGCTCAGAACCACTGGAACCAATCTGTGCTAAACTTAACCTTAAACGTAAGAAAAATGT 1524
Query 1703 TCTGCGAAATGGACGAGGCTCTGTTCATGTCTTGCCACGCCCGCTTTAAGGAGGACGAAG 1762
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1525 TCTGTGAAATGGACGAGGCTCTGTTCATGTCTTGCCACGCCCGCTTTAAAGAGGACGAAG 1584
Query 1763 CAAAGCAATGTTCTGCTGCGGAAAAGAGGAAAGAAGTATGGGCAAGGCTAGAGAATGCAG 1822
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1585 CAAAGCTATGTTCTGCAGCGGAAAAGAGGAAAGAAGTATGGGCAAGGCTAGAGAACGCAG 1644
Query 1823 CAAGTATGAAGCCGATAACAGGAAAGACTGCTGTTCTGGTAACTCCTCGAGCAACCTCCA 1882
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1645 CAAGTATGAAGCCGATAACAGGAAAGACGGCTGTTCTGGTAACTCCTCGAGCAACCTCCA 1704
Query 1883 TCGCCTGCTAAATAGCGTTTAAACCAATTCACAGACAGTTTATCCAA---A---GCA--A 1934
| ||||||||||||||| |||||||||||||| |||||||||||||| | | | |
Sbjct 1705 TTGCCTGCTAAATAGCGCTTAAACCAATTCACGGACAGTTTATCCAACGGAAATGAAGCA 1764
Query 1935 -CAACATCGAGAAG-ATGATGGAGTGGCTGTTGCTTAAGCTATAGTCTT-GGGAACTTTT 1991
||||||| | ||| |||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1765 GCAACATCAA-AAGGATGATGGAGTGGCTGTTGCTTAAGCTATGGTCTTCGGGAACTTTT 1823
Query 1992 CATCGAGGTTGATCTCTGTAATATTATATAACTTTGATGTTGTTAGCTGTGTGGGTTTTA 2051
||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1824 CATCGGGGTTGATCTTTGTAATATTATATAACTTTGATGTTGTTAGATGTGTGGGTTTTA 1883
Query 2052 ATGCTAATTCTATTGCTTTCTTTTAAAGCAATGAAACCATGCTGCAGATTTTT--ATCAA 2109
||||||| ||| |||||| | ||||||||||||||||||||||||| |||||| |||||
Sbjct 1884 ATGCTAAATCTCTTGCTTCCCTTTAAAGCAATGAAACCATGCTGCATATTTTTTTATCAA 1943
Query 2110 ACTCTTTGTATCAATCAATTAAGTTTATATATCCTTTTTCTTTC 2153
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1944 ACTCTTTGTATCAATCAATTAAGTTTATATATCCTTTTTCTTTC 1987
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81017951115
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5