BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25520.2
Length=3334
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489410 jgi|Araly1|489410|fgenesh2_kg.6__2544__AT5G25520.2 2990 0.0
Ahg350338 jgi|Araly1|350338|fgenesh1_pg.C_scaffold_6000931 695 0.0
Ahg481416 jgi|Araly1|481416|fgenesh2_kg.4__476__AT2G25640.1 243 9e-63
> Ahg489410 jgi|Araly1|489410|fgenesh2_kg.6__2544__AT5G25520.2
Length=3370
Score = 2990 bits (1619), Expect = 0.0
Identities = 2008/2186 (92%), Gaps = 65/2186 (3%)
Strand=Plus/Plus
Query 76 TTTTAGGGTTTCTTCTTCCTTTCGCACATATCTT-CTCCGATTGATTTTGCAGTGAAATT 134
|||||||||||| |||||| |||||||||||||| |||||||||||||| ||||||| ||
Sbjct 1 TTTTAGGGTTTCCTCTTCCCTTCGCACATATCTTGCTCCGATTGATTTTCCAGTGAACTT 60
Query 135 GT-GTATCTTTTTGTTGTTAATCAGAGCTGTTGAAGTGAATGTTTGGATATAGCTGTGGT 193
|| | | |||||||| || |||||||||||||||||||||||||||||| ||||| ||
Sbjct 61 GTATTTTATTTTTGTT-TTTCTCAGAGCTGTTGAAGTGAATGTTTGGATATCGCTGTTGT 119
Query 194 GGTTTCGTATCATGTCCAGTAATATGGGAACAGAGCTTATTGATCTGGAGACTGTGAAAG 253
||||| |||||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 120 GGTTTAGTATCATGTCCAGTAATATGGGAACAGAGCATATTGATCTGGAGAC------A- 172
Query 254 CGGATTCAGATGCTTTTGGAGAAACGAATTTGATGGAGTTAGTTGGATCAAATGATCCTC 313
|| | | ||||||||||||||||| |||| ||| |||| |||||||||||
Sbjct 173 --GA-T---A--CTTTTGGAGAAACGAATCTGATAGAGATAGTAGGATCAAATGA----- 219
Query 314 CTTCTCTTCAGCATATCTCAGTTTCAGAGATTGAGCAAGAGCCTATGGAAATATCTGTCT 373
||||||||||||||||||||| || || ||||||||| |||||| ||||||||
Sbjct 220 -------TCAGCATATCTCAGTTTCAGACATGGAACAAGAGCCTTTGGAAACATCTGTCT 272
Query 374 CTGGTCCTTTGTCATTCCAATTTGAGCCAGAGGCTGTCTCTTTTCAATCATCTATGTTGG 433
||||||||||| |||||| |||||| || |||| ||||||||||||||| ||||||||||
Sbjct 273 CTGGTCCTTTGGCATTCCGATTTGAACCTGAGGATGTCTCTTTTCAATCCTCTATGTTGG 332
Query 434 TTGATACTCAGTCTTTGATGCCTCAGTTGCAA----C--TT-C-CA----TATTCTGTAG 481
||||||| |||||||||||||||||||||||| | || | || ||||||| ||
Sbjct 333 TTGATACCCAGTCTTTGATGCCTCAGTTGCAACTTCCTGTTGCACATTCGTATTCTGGAG 392
Query 482 AGAGGTCAGTAGCTGCATGTAGTA-AC-T-CAGTGACAGGGAAGCGGAAATCGCCACCAG 538
|||| || ||| |||||||||||| | | ||| | |||||||||| || || |||||||
Sbjct 393 AGAGTTCTGTATCTGCATGTAGTATCCTTCCAGGGGCAGGGAAGCGTAATTCACCACCAG 452
Query 539 AG--TC--T--ACTCTCAGTGGTTCTGCTACTTCCGAGAAGTTAGATGCATCTAACAAGC 592
|| || | |||||| ||||||||||| |||||||||||||||||||| | || | ||
Sbjct 453 AGTCTCAGTCGACTCTCGGTGGTTCTGCTGCTTCCGAGAAGTTAGATGCACCAAATAGGC 512
Query 593 GAGTAGAGCCAGTGCACCACAGACCATGGCTAGAACAATTTTATTCAGAATGTATTCAGC 652
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 513 GAGTAGAGCCAGTGCATCACAGACCATGGCTAGAACAATTTTATTCAGAAAGTATTGAGC 572
Query 653 GGGGTCATATGCCACCACCTGCTACTCTTTCTACCAAGACAGAACATCTACCAACGCCTG 712
||||||||||||| |||||||||||||||||| ||||||| ||||||| ||||||| |||
Sbjct 573 GGGGTCATATGCCGCCACCTGCTACTCTTTCTCCCAAGACGGAACATCCACCAACGTCTG 632
Query 713 CTAAGAAAGT-AAGGCAAATGGAACCTGCTTCCCAAAAATCTGGGAAGCAAGTGATGAAC 771
|||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 CTAAGAGA-TCAAGGCAAATGGAACCTGCTTCCCAAAAATCTGGGAAGCAAGTGATGAAC 691
Query 772 AAGAAACAAGCAGGCTTGTCACAAGGGTCGGTGAAAACACTGAATGATGGTAACGAGTCT 831
||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 692 AAGAAACAATCAGGCCTGTCACAAGGGTCGGTGAAAACACAGAATGATGGTAACGAGTCT 751
Query 832 TTGAGGTCTAAAATGAAGGAATCATTAGCAGCTGCCTTGGCTTTGGTTCACGAGCATGAG 891
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 752 TTAAGATCTAAAATGAAGGAATCATTAGCAGCTGCCTTGGCTTTGGTTCACGAGCATGAG 811
Query 892 GAGTCTCCGAAAGAGAAAAAGAATTCAGAAACTGAAGAAGCAAGTGTTCCAGTAGCTGAT 951
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 812 GAATCTCCGAAAGAGAAAAAGAATTCAGAAACTGAAGAAGCAAGTGTTCCAGTAGCTGAA 871
Query 952 AGTAATGAGCCTGCGTCAGCCTG-TGGTACCAGTGTTACAGTAGGTGAAGACATCACGCC 1010
|||||||||||||| |||||| | |||||| ||||||||||||| |||||||||||| ||
Sbjct 872 AGTAATGAGCCTGCCTCAGCC-GATGGTACTAGTGTTACAGTAGCTGAAGACATCACACC 930
Query 1011 AGCAATGTCCACAAGGGATGAAAGTTTTGAGCAGAAGAACGGCAATGGAAGAACTTTGTC 1070
||| |||| ||||||||||| ||||||| ||||||||| ||||||||||||| ||||||
Sbjct 931 GGCATTGTCAACAAGGGATGATAGTTTTGGGCAGAAGAATGGCAATGGAAGAATTTTGTC 990
Query 1071 GCAAGAGAGTTCCAAGGACACCAAGATGAATTATGTTAATCAATCTGATGTACAGAAAAC 1130
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 991 GCAAGAGAGTTCCAATGACACAAAGATGAATTATGTTAATCAATCTGATGTACAGAAAAC 1050
Query 1131 TCAATTTGACGAGGTTTTCCCCTGTGATGATGTTCGTTTTAGTGATAGTATTTTTACTGG 1190
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1051 TCAATTTGACGAGGTTTTCCCCTGTGATGATGTTCGTTTTAGTGATAGTATTTTTTCTGG 1110
Query 1191 CGATGAACTTTTACAGGGTAATGGCCTCTCATGGGTTTTGGAACCTGTTTCAGATTTTGG 1250
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GGATGAACTTTTACAGGGTAATGGCCTCTCATGGGTTTTGGAACCTGTTTCAGATTTTGG 1170
Query 1251 GGAGAATGAAACTCAAAAGTCGTTTGAGGATCCAGAGCTCTTGGCATCTAAAATTGAGTT 1310
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1171 GGAGAATGAACCTCAAAAGTCGTTTGAGGATCCAGAGCTCTTGGCATCTAAAATTGAGTT 1230
Query 1311 GGAACTTTTTAAGCTATTTGGAGGTGTGAACAAGAAGTACAAAGAGAAGGGAAGGTCTCT 1370
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 GGAACTTTTTAAGCTATTTGGAGGTGTGAACAAGAAGTACAAAGAGAAGGGAAGGTCTCT 1290
Query 1371 CTTATTCAATTTGAAGGATAAGAACAATCCTGAGCTAAGAGAAAGTGTCATGTCCGGAAA 1430
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1291 CTTATTCAATTTGAAGGATAAGAACAATCCTGAGCTAAGAGAAAGTGTCATGTCCGGAAA 1350
Query 1431 GATATCTCCAGAGAGATTATGTAATATGACAGCTGAGGAACTTGCTTCTAAGGAGCTTTC 1490
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1351 GATATCTCCAGAGAGATTGTGTAATATGACAGCTGAGGAACTTGCTTCTAAGGAGCTTTC 1410
Query 1491 TCAGTGGCGACAAGCAAAAGCAGAAGAGATGGCGGAGATGGTTGTCCTACGGGACACAGA 1550
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1411 TCAGTGGCGACAAGCAAAAGCAGAAGAGATGGCGGAGATGGTTGTCCTGCGGGATGCAGA 1470
Query 1551 CATTGATGTCAGAAATCTGGTGAGGAAAACGCATAAAGGTGAGTTCCAGGTAGAAATTGA 1610
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1471 CATTGATGTCAGAAATCTGGTGAGGAAAACGCATAAAGGTGAGTTCCAGGTAGAAATTGA 1530
Query 1611 TCCCGTTGACAGTGGGACAGTGGATGTCTCTGCTGAGATTACATCAAATAGTAAACCTCG 1670
||| ||||| ||||||||||||||||| |||||||||||||| ||| |||||||||||||
Sbjct 1531 TCCTGTTGATAGTGGGACAGTGGATGTGTCTGCTGAGATTACCTCACATAGTAAACCTCG 1590
Query 1671 AGCCAAAGCAAAATCCTCGAAATCATCTACCAAAGCCACTTTAAAGAAAAATGACTCTAA 1730
|||||||||||||||| | ||||||||||||||| |||||||||||||||||| ||| ||
Sbjct 1591 AGCCAAAGCAAAATCCGCAAAATCATCTACCAAATCCACTTTAAAGAAAAATGGCTCGAA 1650
Query 1731 TGATAAGAACATAAAA-TCCAACCAGGGAACATCATCTGCTGTGACTCTGCCCCCAACAG 1789
|||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||
Sbjct 1651 TGATAAGAACATAAAACTC-AACCAGGGAACATCATCTGCTATGACTCTGCCCCCAACAG 1709
Query 1790 AGGAGATTGATCCGATGCAAGGTCTGTCAATGGATGATGAGATGAAGGATGTGGGATTTC 1849
||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1710 AGGAGATTGATCCAATGCATGGTCTGTCAATGGATGATGAGATGAAGGATGTGGGTTTTC 1769
Query 1850 TTCCTCCAATTGTATCCCTTGATGAGTTCATGGAATCCCTGAACTCAGAACCTCCATTTG 1909
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1770 TTCCTCCAATTGTATCGCTTGATGAGTTCATGGAATCCCTGAACTCAGAACCTCCATTTG 1829
Query 1910 GCAGTCCACATGAACATCCTCCTGGAAAGGAAGATCCTGCATCTGAGAAGAGTGACTCTA 1969
||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1830 GCAGTCCACATGAGCATCCTCCTGTAAAGGAAGAGCCTGCATCTGAGAAGAGTGACTCTA 1889
Query 1970 AAGATGGGTCACATTCAAAATCACCTTCAAGATCTCCTAAGCAGTCTCCAAAGGAACCGA 2029
||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |
Sbjct 1890 AAGATGGGTCACATTCAAAATCACCTTCAAGATCTCCAAAACAGTCTCCAAAGGAACCCA 1949
Query 2030 GTGAGAGCGTCTCTTCTAAAACAGAACTCGAAAA-GACTAATGTAATTTCCCCAAAACCT 2088
||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||| |
Sbjct 1950 GTGAGAGCGTCTCTTCTAAAACAGAACTC-AAAATGACTAATGTAACTTCCCCAAAAC-T 2007
Query 2089 G-ATGCTGGTGACCAACTCGACGGTGATGTCTCCAAACCTGAA-AA-TACATCTTTGGTT 2145
| ||||||||| | |||||||| ||||||||| ||||||||| || ||| | |||||||
Sbjct 2008 GGATGCTGGTGTCAAACTCGACACTGATGTCTCTAAACCTGAAGAAATAC-T-TTTGGTT 2065
Query 2146 GATAGCATTAAAGAGGATCGAATATGGGATGGTATATTGCAGCTTAGTTCCGCTTCAGTT 2205
|||| |||||||||||| |||||||||||||||||| ||||||||||| ||||||| |||
Sbjct 2066 GATAACATTAAAGAGGACCGAATATGGGATGGTATACTGCAGCTTAGTGCCGCTTCCGTT 2125
Query 2206 GTCTCAGTCACTGGAATTTTCAAGAG 2231
||||||||||||||||||||||||||
Sbjct 2126 GTCTCAGTCACTGGAATTTTCAAGAG 2151
Score = 1432 bits (775), Expect = 0.0
Identities = 1026/1141 (90%), Gaps = 42/1141 (4%)
Strand=Plus/Plus
Query 2232 TGGTGAGAAAGCAAAGACAAGCGAGTGGCCAACAATGGTGGAGGTAAAGGGTAGAGTGAG 2291
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2233 TGGTGAGAAAGCAAAGACAGGCGAGTGGCCAACAATGGTGGAGGTAAAGGGTAGAGTGAG 2292
Query 2292 ACTCAGTGCGTTTGGGAAGTTTGTAAAAGAGCTTCCGTTGTCTCGAAGCCGTGTCTTAAT 2351
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2293 ACTCAGCGCGTTTGGGAAGTTTGTAAAAGAGCTTCCGTTGTCTCGAAGCCGTGTCTTAAT 2352
Query 2352 GGTAATGAACGTGGTTTGCAAGAATGGTATCTCTCAGAGCCAACGTGATAGCCTAATTGA 2411
|||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||
Sbjct 2353 GGTAATGAACGTGGTTTGCAAGGATGGTATCTCTCAGAGCCAACGTGATAGTCTTTTTGA 2412
Query 2412 GGTTGCTAAGTCATACGTAGCTGACCAAAGAGTTGGTTACGCAGAACCAACCTCGGGCGT 2471
|||| ||||||| |||||||||||||||||||||||||| ||||| ||||| || |||||
Sbjct 2413 GGTTACTAAGTCGTACGTAGCTGACCAAAGAGTTGGTTATGCAGAGCCAACGTCAGGCGT 2472
Query 2472 TGAGCTTTACCTCTGTCCAACACTG-GGTGAAAC-CTTGGATTTGTTGAGCAAAATCATC 2529
||||||||||||||||||| ||| | ||||||| |||| | ||||||||||||||||||
Sbjct 2473 TGAGCTTTACCTCTGTCCACCAC-GCGGTGAAATACTTG-AGTTGTTGAGCAAAATCATC 2530
Query 2530 TCCAAGGATTATCTTGATGAGGTCAAGTGTTCAGAAGATATCGGGTTGATTGGTGTTGTT 2589
|| ||||| ||||||||||||||||||||||||| | |||||||||||| |||||||||
Sbjct 2531 TCAAAGGACCATCTTGATGAGGTCAAGTGTTCAGAGGTTATCGGGTTGATCGGTGTTGTT 2590
Query 2590 GTGTGGAGGCGTGCAGTTGTCGCGTCTCCTGGCTCACGCCATAAGCCGGGATTCAAACGT 2649
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 2591 GTGTGGAGGCGTGCAGTTGTCGCGTCTCCTGGCTCACGACATAAGCCTGGATTCAAACGT 2650
Query 2650 CAGCATTCTTCTACAGGCACTAAGAGGTCTGTATTGGCTCCAGAAAACCAAAAGTCTAGA 2709
|||||||||||| | || |||||| |||||| ||||||||||||||| ||||||| ||
Sbjct 2651 CAGCATTCTTCTTCTGGTGCTAAGAAGTCTGTGTTGGCTCCAGAAAACAAAAAGTCCAGT 2710
Query 2710 AGTGTGAGTGTTACGAATCCTTC---TGTTGTAAATGTTGAATCCATGAGGAATCATGGT 2766
|||||| |||||||||||| | |||||||||||||| |||||||||||||||||||
Sbjct 2711 GGTGTGAATGTTACGAATCCGCCGCCTGTTGTAAATGTTGCATCCATGAGGAATCATGGT 2770
Query 2767 TTGGTTGGTTGTGATGATGATGATGAAGACATGCCTCCTGGATTTGGTCCTGTAGCTGCG 2826
|||||||||| |||| |||||||||||||| |||| |||||||||||||| |||||||||
Sbjct 2771 TTGGTTGGTTTTGATAATGATGATGAAGACGTGCCACCTGGATTTGGTCCCGTAGCTGCG 2830
Query 2827 AAAGATGACGATGATTTACCGGAATTTAACTTTAATTCCTCCAGTGGACCGGTTACTTCT 2886
||||||||||||||||| || ||||||||||| ||||||||||||||||| |||||||||
Sbjct 2831 AAAGATGACGATGATTTGCCAGAATTTAACTTCAATTCCTCCAGTGGACCAGTTACTTCT 2890
Query 2887 TCTCCTCGACCACCGT-TGCAGTCCCGGTCTTTGGATCAAGTAAGGGAGCTCATACTCAA 2945
||||||| ||||||| | ||||| |||||| |||| ||||||||||||||||| || ||
Sbjct 2891 TCTCCTCAACCACCGCCT-CAGTCTCGGTCTATGGAGCAAGTAAGGGAGCTCATTCTTAA 2949
Query 2946 GTATGGAAATTCAACAGGTAGTGGTAGTAAACGACCATGGGATGGTCATGATGATGATGA 3005
|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2950 ATATGGAAATTCAGCAGGTAGTGGTAGTAAACGACCATGGGATGGTCATGAGGATGATGA 3009
Query 3006 TGACGACGACATTCCTGAATGGCAACCGCAA--C-------------T------GCCACC 3044
||||| |||||||||||||||||||||||| | | ||||||
Sbjct 3010 CGACGATGACATTCCTGAATGGCAACCGCAAGTCACAGGCCACCAAGTTCAACTGCCACC 3069
Query 3045 ACCACCTCCTGACTTGAGTCCTCAATTTCATAGCGGAACCATGGCCAGACCACCAGCACA 3104
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 3070 ACCACCTCCTGACTTGAGTCCTCAATTTCATAGCAGAACCATGGCTAGACCACCAGCACA 3129
Query 3105 ACGAC--C-TGTTGCGGGACCACCGAGTGGATGGAAGGCCAATCAAAACGCACCTAGGCA 3161
|| || | ||||||||||||| ||||||||||||||||| |||||||| ||||||| ||
Sbjct 3130 ACAACAACCTGTTGCGGGACCATCGAGTGGATGGAAGGCCTATCAAAACACACCTAGACA 3189
Query 3162 ACAACAGTACAGTGCACGTAGGAACAGAGGATTTTGATCTTTGTGAATACGTTTGTGTAA 3221
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 3190 ACAACAGTACAGTGCACGTAGAAACAGAGGATTTTGATCTTTGTGAATGCGTTTGTGTAA 3249
Query 3222 TTAAAGTTTGTTAGGTCTATTGACGTCTCTATCATCGGCTTTTA---------AGTGTTT 3272
|||||||||||||||| ||||||| ||||||||||| |||||| |||||||
Sbjct 3250 TTAAAGTTTGTTAGGTGTATTGACTTCTCTATCATCAGCTTTTTTTGTTTTGTAGTGTTT 3309
Query 3273 CTATAGAATTGTAAACCTTTGAATAATGGAGTCTTTTAAGCATAAAAGTTTGAACTCAAC 3332
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 3310 CAATAGAATTGTAAACCTTTGAATAATGGAGTCTTTTAAGCATAAAAGTTTGAATTCAAC 3369
Query 3333 A 3333
|
Sbjct 3370 A 3370
> Ahg350338 jgi|Araly1|350338|fgenesh1_pg.C_scaffold_6000931
Length=2460
Score = 695 bits (376), Expect = 0.0
Identities = 1049/1361 (77%), Gaps = 98/1361 (7%)
Strand=Plus/Plus
Query 1265 AAAAGTCGTTTGAGGATCCAGAGCTCTTGGCATCTAAAATTGAGTTGGAACTTTTTAAGC 1324
||||||| | | |||||||| | || ||||||||||||||||| ||||||| | |||||
Sbjct 584 AAAAGTCATATCAGGATCCAAAACTTTTGGCATCTAAAATTGAAATGGAACTGTATAAGC 643
Query 1325 TATTTGGAGGTGTGAACAAGAAGTACAAAGAGAAGGGAAGGTCTCTCTTATTCAATTTGA 1384
||||||||||||||||||| ||||||| ||||| ||||||||| ||||||||||||||||
Sbjct 644 TATTTGGAGGTGTGAACAAAAAGTACAGAGAGAGGGGAAGGTCCCTCTTATTCAATTTGA 703
Query 1385 AGGATAAGAACAATCCTGAGCTAAGAGAAAGTGTCATGTCCGGAA-AGATATCTCCAGAG 1443
||||||||||||||||||| ||||||||||| || ||||| |||| | || ||| | |||
Sbjct 704 AGGATAAGAACAATCCTGATCTAAGAGAAAGAGTTATGTC-GGAAGAAATTTCTGCTGAG 762
Query 1444 AGATTATGTAATATGACAGCTGAGGAACTTG-CTTCTAAGGAGCTTTCTCAGTGGCGACA 1502
|| || ||| ||||||||| || ||| ||| ||||||||||||||||||||||||| ||
Sbjct 763 AGGTTGTGTTCTATGACAGCCGAAGAA-TTGGCTTCTAAGGAGCTTTCTCAGTGGCGTCA 821
Query 1503 AGCAAAAGCAGAAGAGATGGCGGAGATGGTTGTCCTACGGGACACAGACATTGATGTCAG 1562
||| ||||| ||||||||||| ||||||||||||| | ||| ||||| |||||||||||
Sbjct 822 AGCCAAAGCTGAAGAGATGGCAAAGATGGTTGTCCTGCAGGATACAGATATTGATGTCAG 881
Query 1563 AAATCTGGTGAGGAAAACGCATAAAGGTGAGTTCCAGGTAGAAATTGATCCCGTTGACAG 1622
|| ||||||||||||||| ||||| ||||| |||||||| || ||||| || ||||||||
Sbjct 882 AAGTCTGGTGAGGAAAACACATAAGGGTGAATTCCAGGTTGAGATTGAACCAGTTGACAG 941
Query 1623 TGGG-ACAGTGGATGTCTCTGCTGAG-ATTACATCAAATAGTAAAC-CTCGAGCCAAAGC 1679
||| || || |||||||||| || | || | ||| ||| |||| | ||| |||||||
Sbjct 942 -GGGCACGGTAGATGTCTCTGGTG-GCATCATGTCACGTAGCAAACGC-CGACCCAAAGC 998
Query 1680 AAAATCCTCGAAATCATCTACCAAAGCCACTTT-AAAGAAAAATGACTCTAATGATAAGA 1738
||||| || | || | | | ||| ||||| | ||||| ||| | | | |||
Sbjct 999 CAAATC-TC-AT-TC-TGT-CAAAA-CCACTCTCAAAGA----TGAGGC-AGCAA-AAGC 1046
Query 1739 ACATAAAATCCAACCAGGGAACATCATCTGCTGTGACTC-TGCCCCCAACAGAGGAGATT 1797
||| | || | || ||| | ||| |||| | ||| |||| || |||||
Sbjct 1047 TGATAG--TG-AA--A---AA--TCA-C-GCTCA-ACTCCT-CCCTCAACTGAAGAGATC 1092
Query 1798 GATCCGATGCAAGGTCTGTCAATGGATGATGAGAT-GAAGGATGTGGGATTTCTTCCTCC 1856
||||| ||||||||| || || |||||||| || |||||| ||||| |||||||||||
Sbjct 1093 GATCCCATGCAAGGTTTGGGGATCGATGATGA-ATTGAAGGACGTGGGGTTTCTTCCTCC 1151
Query 1857 AATTGTATCCCTTGATGAGTTCATGGAATCCCT-GAACTCAGAACCTCCATTTGGCAGTC 1915
||||||||| |||||||| ||||||||||| || || ||| || |||||||||| ||||
Sbjct 1152 AATTGTATCACTTGATGAATTCATGGAATCTCTAGA-CTCTGAGCCTCCATTTGAAAGTC 1210
Query 1916 CACATGA-ACATCCTCCTGGAAAGGAAGATC-CTGCATCTGAGAAGAGTGACTCTAAAGA 1973
| |||| | || || || ||| | || | || | |||||||| ||||| ||| |||
Sbjct 1211 CGCATGGTA-AT--TC-TG-AAATGCAGGTGTCTCCGTCTGAGAAAAGTGATTCTGAAGC 1265
Query 1974 TGGGTCACATTCAAAATCACCTTCAAG-ATCTCCTAAGCAGTCTCCAAAGGAACCGAGTG 2032
||||||| | |||||||| ||| ||| |||||||||| | | | || | || |
Sbjct 1266 TGGGTCAGACTCAAAATCTCCTA-AAGGATCTCCTAAGGAA-C-C-AA-GT----GA-TA 1315
Query 2033 AGAGCGTCTCTTC-TAAAACAGAACTC-GAAAAGACTAATGTAATT-TCCCCAAAACCTG 2089
| || | | | | | || || ||| | ||||||| | ||| || | ||||| || ||
Sbjct 1316 AAAG--T-T-TGCCTGAACCAAAAC-CAGAAAAGATTGATG-AAGTGTCCCCGAAGGTTG 1369
Query 2090 ATGCTGGTGACCAACTCGACGGTGATGTCTCCAAACCTGA-AAATACATCT----TTGGT 2144
|||| | | || | || | |||||| | | || ||| ||| |||||| || ||
Sbjct 1370 ATGCCAACGTCAAAGTTGATGACGATGTCGCTAGACTTGAGAAA-ACATCTGCACTTAGT 1428
Query 2145 TGATAGCATTAAAG-AGGATCGAATATGGGATGGTATATTGCAGCTTAGT-TCCGCTTCA 2202
||| | || || | || | || ||||||||| ||| |||| || ||| | ||||
Sbjct 1429 -GAT-G-AT-AAGGGAGAAA-GAGCATGGGATGGAATACTGCAACTGAGTATGT-CTTCC 1482
Query 2203 GTTGTCTCAGTCACTGGAATTTTCAAGAGTGGTGAGAAAGCAAAGACAAGCGAGTGGCCA 2262
|| ||| | |||||||| |||||||| ||||||||||||||| |||| |||||||||||
Sbjct 1483 GTAGTCCCTGTCACTGGCATTTTCAAAAGTGGTGAGAAAGCAGAGACGAGCGAGTGGCCG 1542
Query 2263 ACAATGGTGGAGGTAAAGGGTAGAGTGAGACTCAGTGCGTTTGGGAAGTTTGTAAAAGAG 2322
| |||||||| || ||||||||||| || || |||| ||||||||||||| | |||||
Sbjct 1543 GCGATGGTGGAAGTTAAGGGTAGAGTTAGGCTAAGTGGGTTTGGGAAGTTTATTCAAGAG 1602
Query 2323 CTTCCGTT-GTCTCGAAGCCGTGTCTTAATGGTAATGAACGTGGTTTGCAA-GAATGGTA 2380
||||| | |||||||| ||||| | ||||||||||| || ||| ||| || || || |
Sbjct 1603 CTTCC-TAAGTCTCGAACCCGTGCCCTAATGGTAATGTACTTGGCTTGTAAAGAC-GGCA 1660
Query 2381 TCTCTCAGAGCCAACGTG-ATAGCCTAATTGAGGTTGCTAAGTCATACGTAGCTGACCAA 2439
| ||| ||||||| |||| | ||||| ||||||||| | | || ||||| ||||| ||
Sbjct 1661 TTTCTGAGAGCCAGCGTGGA-AGCCTTATTGAGGTTATTGATTCCTACGTTGCTGATCAG 1719
Query 2440 AGAGTTGGTTACGCAGAACCAACCTCGGGCGTTGAGCTTTACCTCTGTCCAACAC-TGGG 2498
|||||||| |||||||| ||| |||| || || ||||||||||| || ||||||| |||
Sbjct 1720 AGAGTTGGCTACGCAGAGCCAGCCTCAGGAGTGGAGCTTTACCTTTGCCCAACACGTGGC 1779
Query 2499 TGAAAC-CTTGGATTTGTTGAGCAAAATCATCTC-CAAGGATTATCTTGATGAGGTCAAG 2556
|| || || ||||||| | |||||| ||||||| |||| | | || ||||||||||||
Sbjct 1780 -GAGACTCT-GGATTTGCTAAGCAAAGTCATCTCTCAAGAAC-AGCTCGATGAGGTCAAG 1836
Query 2557 TGTTCAGAAGATATCGGGTTGATTGGTGTTGTTGTGTGGAG 2597
| || | ||||| || ||| |||| ||||||||||||||
Sbjct 1837 TCTTT-G--GATATTGGATTGGTTGGAGTTGTTGTGTGGAG 1874
> Ahg481416 jgi|Araly1|481416|fgenesh2_kg.4__476__AT2G25640.1
Length=2241
Score = 243 bits (131), Expect = 9e-63
Identities = 291/369 (79%), Gaps = 8/369 (2%)
Strand=Plus/Plus
Query 1278 GGATCCA-GAGCTCTTGGCATCTAAAATTGAGTTGGAACTTTTTAAGCTATTTGGAGGTG 1336
||||||| || | ||||||| | |||| ||| ||||| |||||| ||||||| ||||
Sbjct 1050 GGATCCACAAG-TTTTGGCATTTGAAATAGAGGCAGAACTGTTTAAGTTATTTGGTGGTG 1108
Query 1337 TGAACAAGAAGTACAAAGAGAAGGGAAGGTCTCTCTTATTCAATTTGAAGGATAAGAACA 1396
|||| ||||| || |||||||| |||||||||||||| ||||||||||| || |||| |
Sbjct 1109 TGAATAAGAAATATAAAGAGAAAGGAAGGTCTCTCTTGTTCAATTTGAAAGACAAGAGTA 1168
Query 1397 ATCCTGAGCTAAGAG-AAAGTGTCATGTCCGGA-AAGATAT-CTCCAGAGAGATTATGTA 1453
||||| | || || | |||| || |||| ||| || || | | ||||| |||| |||
Sbjct 1169 ATCCTAAACTCAGGGAAAAG-GTTATGTATGGAGAA-AT-TGCAGCAGAGCGATTGTGTT 1225
Query 1454 ATATGACAGCTGAGGAACTTGCTTCTAAGGAGCTTTCTCAGTGGCGACAAGCAAAAGCAG 1513
||| |||| || ||||||||||| ||||| || || |||||||||||||||||||||
Sbjct 1226 CCATGTCAGCAGAAGAACTTGCTTCAAAGGAACTAGCTGAGTGGCGACAAGCAAAAGCAG 1285
Query 1514 AAGAGATGGCGGAGATGGTTGTCCTACGGGACACAGACATTGATGTCAGAAATCTGGTGA 1573
|||||||||| |||||||||| || | ||||||||| | ||| |||||| || || |
Sbjct 1286 AAGAGATGGCTCAGATGGTTGTTCTGCAGGACACAGAGGTGGATATCAGAAGCCTAGTAA 1345
Query 1574 GGAAAACGCATAAAGGTGAGTTCCAGGTAGAAATTGATCCCGTTGACAGTGGGACAGTGG 1633
||||||| || ||||| |||||||| || ||| |||| || | || ||||| |||| |
Sbjct 1346 GGAAAACACACAAAGGAGAGTTCCAAGTGGAAGTTGAACCAATGGATAGTGGCTCAGTAG 1405
Query 1634 ATGTCTCTG 1642
| |||||||
Sbjct 1406 AGGTCTCTG 1414
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125856393911
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5