BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25530.1
Length=1044
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894468 jgi|Araly1|894468|Al_scaffold_0006_2464 1546 0.0
> Ahg894468 jgi|Araly1|894468|Al_scaffold_0006_2464
Length=1044
Score = 1546 bits (837), Expect = 0.0
Identities = 979/1048 (93%), Gaps = 8/1048 (1%)
Strand=Plus/Plus
Query 1 ATGGGTTTGGATTATTACGATATATTGAAAGTGAATAGGAACGCAACAGAGGATGATCTA 60
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGGTTTGGATTATTACAATATATTGAAAGTGAATAGAAACGCAACAGAGGATGATCTA 60
Query 61 AAGAAATCTTACAGAAAATTGGCTATGAAATGGCATCCTGACAAAAACCCTAACACCAAA 120
||||||||||| |||| |||||||||||||||||||||||||||||||||||| || |||
Sbjct 61 AAGAAATCTTATAGAAGATTGGCTATGAAATGGCATCCTGACAAAAACCCTAATACTAAA 120
Query 121 ACAGAAGCTGAAGCCAAGTTTAAGCAAATCTCTGAGGCTTATGAGGCGAA--ATAT-GAG 177
||||||||||||||||||||||| || |||||||||||||||||||| || | | |
Sbjct 121 ACAGAAGCTGAAGCCAAGTTTAAACAGATCTCTGAGGCTTATGAGGC-AAGTCTTTCCA- 178
Query 178 GTAATGTTTCAGGTTTTGAGTGATCCGCAGAAGCGAGCGGTGTATGATCAATACGGGGAA 237
| | ||| || |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 179 TTTTTCTTT-TTGTCTTGAGTGATCCGCAGAAGCGAGCGGTATATGATCAATACGGGGAA 237
Query 238 GAAGGATTAAGCGATATGCCACCTCCCGGGAGCACGGGAAACAATGGAAGAGCGGGAGGT 297
|||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| |||
Sbjct 238 GAAGGATTAAGCGATATGCCGCCTCCTGGGAGCATGGGAAACAATGGAAGAGCGGGCGGT 297
Query 298 TTTAACCCTAGAAATGCGGAAGATATATTTGCAGAGTTCTTTGGAAGTAGTCCATTTGGA 357
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 298 TTTAACCCGAGAAATGCAGAAGATATATTTGCAGAGTTCTTTGGAAGTAGTCCATTTGGG 357
Query 358 TTTGGTTCAGCTGGTGGTCCTGGAAGGTCAATGAGGTTTCAATCAGACGGTGGAGGAGGA 417
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 TTTGGATCAGCTGGTGGTCCTGGAAGGTCAATGAGGTTTCAATCAGACGGTGGAGGAGGA 417
Query 418 ATGTTTGGCGGGTTTGGTGGTGGAAACAACGGTAGCGAAAACAATATATTCAGAACTTAC 477
||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 418 ATGTTTGGCGGATTTGGTGGCGGAAACAACGGAAGCGAAAACAATATATTCAGAACTTAC 477
Query 478 AGTGAAGGCACTCCTGCGCCTAAGAAACCTCCACCGGTTGAGAGTAAATTGCCTTGTAGC 537
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 478 AGCGAAGGCACTCCTGCGCCTAAGAAACCTCCACCGGTTGAGAGCAAATTGCCTTGTAGC 537
Query 538 CTTGAAGAGTTGTATTCTGGATCAACTAGGAAAATGAAGATCTCTAGATCCATTGTTGAT 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 CTTGAAGAGTTGTATTCTGGATCAACTAGGAAAATGAAGATCTCTAGATCCATTGTTGAC 597
Query 598 GCTAATGGGAGACAAGCGCAAGAGACAGAGATTTTGACGATTGTTGTGAAACCAGGATGG 657
||||| |||||||| |||||||| ||||||||| | ||||||||||||||||| ||||||
Sbjct 598 GCTAACGGGAGACAGGCGCAAGAAACAGAGATTCTAACGATTGTTGTGAAACCGGGATGG 657
Query 658 AAAAAAGGGACAAAGATAAAGTTTCCAGACAAAGGAAATGAGCAAGTGAATCAGTTACCA 717
|| |||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 658 AAGAAAGGGACGAAGATCAAGTTTCCGGACAAAGGAAATGAGCAAGTGAATCAATTACCA 717
Query 718 GCTGATTTGGTGTTTGTAATAGACGAGAAACCACATGATTTGTTCACGAGAGATGGGAAT 777
|||||||| ||||||||||| ||||||||||| || |||||||||| |||||||||||||
Sbjct 718 GCTGATTTAGTGTTTGTAATCGACGAGAAACCGCACGATTTGTTCAAGAGAGATGGGAAT 777
Query 778 GATCTCATCACAAG-CAGAAGAGTAACGCTTGCAGAAGCTATAGGAGGAACAACTGTGAA 836
|||||||||||||| || |||||||||||| ||||||||||| |||||||||||||||||
Sbjct 778 GATCTCATCACAAGCCA-AAGAGTAACGCTAGCAGAAGCTATGGGAGGAACAACTGTGAA 836
Query 837 TATCAACACCCTCGATGGGCGGAATCTACCCGTTGGTGTCGCGGAAATCGTGAGTCCCGG 896
||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 837 TATCAACACGCTCGATGGGCGGAATCTACCCGTTGGTGTCACGGAAATCGTAAGTCCCGG 896
Query 897 GTATGAGTTTGTGGTTCCTGGAGAAGGGATGCCAATAGCTAAAGAACCAAGAAACAAAGG 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 GTATGAGTTTGTGGTTCCTGGAGAAGGGATGCCAATAGCTAAAGAACCAAGAAACAAAGG 956
Query 957 TGATCTTAAGATTAAGTTCGATGTTCAGTTTCCCGCAAGATTGACAACGGAGCAGAAATC 1016
|||||||||||| || |||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 957 TGATCTTAAGATCAAATTCGATGTTCAGTTTCCCGCAAGATTGACAACAGAGCAGAAACC 1016
Query 1017 CGCTCTCAAGCGGGTCTTAGCGGGTTGA 1044
||| ||||||||||||||||| |||||
Sbjct 1017 CGCACTCAAGCGGGTCTTAGCAAGTTGA 1044
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38847252423
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5