BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G25540.1 Length=918 Score E Sequences producing significant alignments: (Bits) Value Ahg942127 jgi|Araly1|942127|scaffold_602671.1 568 3e-161 > Ahg942127 jgi|Araly1|942127|scaffold_602671.1 Length=592 Score = 568 bits (307), Expect = 3e-161 Identities = 497/582 (85%), Gaps = 39/582 (7%) Strand=Plus/Plus Query 142 AGCAATGAAGTCAGGAAG-T--TCTACATTGAATCCTTACGCAGCAGCTTATGTACCACT 198 |||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| Sbjct 19 AGCAATGAAGTCAGGAGGATCATCTACATTGAATCCTTACGCAGCAGCTTATGTACCACT 78 Query 199 CTCGAAAAGAGAAGGTTCTTTGGTTGATACAAAGCCTGTCACACAACAACACATGCAGCA 258 |||||||||||| |||||||||| |||||||||||||| |||||| || ||| ||||||| Sbjct 79 CTCGAAAAGAGAGGGTTCTTTGGGTGATACAAAGCCTGCCACACATCATCACGTGCAGCA 138 Query 259 GCAGCACCACCAGCAACAACCTTAT-T-ATGGGTATGGAGTTCAAGGAATGGGAAGTTAT 316 |||||| || || || | | | | |||| |||||||| ||||| |||||||||||| Sbjct 139 GCAGCAGCAACATCATTATG-T-AGCTCATGGTTATGGAGTCCAAGGGATGGGAAGTTAT 196 Query 317 CAAGGAACTCAAATGTCACCTAAGAAGTCACCATCTGAGATGGTATACAATCATCAGCTG 376 | || |||||||||| ||||||||||| | ||||| |||||||||||||||||| || Sbjct 197 CCTGGCTCTCAAATGTCGCCTAAGAAGTC-C--TCTGACATGGTATACAATCATCAGTTG 253 Query 377 AAGGATGAGGATTTGGAGATGGACATGGATATTGAGTATCTATTAGCTA-CATACCCTGG 435 || ||||||||||||||||||||||||||||||||||| || |||| || ||| | |||| Sbjct 254 AAAGATGAGGATTTGGAGATGGACATGGATATTGAGTACCTTTTAG-TAACATTCGCTGG 312 Query 436 TCTTTCACAAGAGTCTATCAATGATGTTTACTTGGCTAACACTTGTGATCTTGATGCAAC 495 ||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 313 TCTTTCACATGAGTCTATCAATGATGTTTACTTGGCTAACAGTTGTGATCTTGATGCAAC 372 Query 496 TATCGAAATGCTGAATCAACTCGAGATTTACAGTACTGAAGCTGAGGAATACCTTCCAGA 555 ||||||||||||||| || || ||||||||||||||||||||| |||||||||| ||||| Sbjct 373 TATCGAAATGCTGAACCAGCTAGAGATTTACAGTACTGAAGCTCAGGAATACCTCCCAGA 432 Query 556 CACACTGGACATTGGTGATGTACCTGAGATCATCACAGAG--T-C----T------T--C 600 ||||||||||||||| ||||||||||||| |||||| ||| | | | | | Sbjct 433 CACACTGGACATTGGCGATGTACCTGAGACCATCACCGAGCCTTCAACCTCGACAGTTTC 492 Query 601 GAAACAAAAGAATGATGGGA--G--T-AGTGCATCGTCATC-T--TCGGGTATCCGCAAC 652 ||||||||||||||| | || | | | | |||| ||||| | |||||||||| |||| Sbjct 493 GAAACAAAAGAATGAAGCGAATGCATCA-T-CATCATCATCATCCTCGGGTATCCACAAC 550 Query 653 GCTAAC-GTATCCTCCTCCTGATTTGATCAGTCCTTaaaaaa 693 || | | ||||||||||||||||||||| ||||||||||||| Sbjct 551 GC-ACCTGTATCCTCCTCCTGATTTGATGAGTCCTTAAAAAA 591 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34043764881 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5