BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G25540.1

Length=918
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942127 jgi|Araly1|942127|scaffold_602671.1                        568    3e-161


> Ahg942127 jgi|Araly1|942127|scaffold_602671.1
Length=592

 Score =  568 bits (307),  Expect = 3e-161
 Identities = 497/582 (85%), Gaps = 39/582 (7%)
 Strand=Plus/Plus

Query  142  AGCAATGAAGTCAGGAAG-T--TCTACATTGAATCCTTACGCAGCAGCTTATGTACCACT  198
            |||||||||||||||| | |  ||||||||||||||||||||||||||||||||||||||
Sbjct  19   AGCAATGAAGTCAGGAGGATCATCTACATTGAATCCTTACGCAGCAGCTTATGTACCACT  78

Query  199  CTCGAAAAGAGAAGGTTCTTTGGTTGATACAAAGCCTGTCACACAACAACACATGCAGCA  258
            |||||||||||| |||||||||| |||||||||||||| |||||| || ||| |||||||
Sbjct  79   CTCGAAAAGAGAGGGTTCTTTGGGTGATACAAAGCCTGCCACACATCATCACGTGCAGCA  138

Query  259  GCAGCACCACCAGCAACAACCTTAT-T-ATGGGTATGGAGTTCAAGGAATGGGAAGTTAT  316
            |||||| || || ||  |   | |  | |||| |||||||| ||||| ||||||||||||
Sbjct  139  GCAGCAGCAACATCATTATG-T-AGCTCATGGTTATGGAGTCCAAGGGATGGGAAGTTAT  196

Query  317  CAAGGAACTCAAATGTCACCTAAGAAGTCACCATCTGAGATGGTATACAATCATCAGCTG  376
            |  ||  |||||||||| ||||||||||| |  ||||| |||||||||||||||||| ||
Sbjct  197  CCTGGCTCTCAAATGTCGCCTAAGAAGTC-C--TCTGACATGGTATACAATCATCAGTTG  253

Query  377  AAGGATGAGGATTTGGAGATGGACATGGATATTGAGTATCTATTAGCTA-CATACCCTGG  435
            || ||||||||||||||||||||||||||||||||||| || |||| || ||| | ||||
Sbjct  254  AAAGATGAGGATTTGGAGATGGACATGGATATTGAGTACCTTTTAG-TAACATTCGCTGG  312

Query  436  TCTTTCACAAGAGTCTATCAATGATGTTTACTTGGCTAACACTTGTGATCTTGATGCAAC  495
            ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  313  TCTTTCACATGAGTCTATCAATGATGTTTACTTGGCTAACAGTTGTGATCTTGATGCAAC  372

Query  496  TATCGAAATGCTGAATCAACTCGAGATTTACAGTACTGAAGCTGAGGAATACCTTCCAGA  555
            ||||||||||||||| || || ||||||||||||||||||||| |||||||||| |||||
Sbjct  373  TATCGAAATGCTGAACCAGCTAGAGATTTACAGTACTGAAGCTCAGGAATACCTCCCAGA  432

Query  556  CACACTGGACATTGGTGATGTACCTGAGATCATCACAGAG--T-C----T------T--C  600
            ||||||||||||||| ||||||||||||| |||||| |||  | |    |      |  |
Sbjct  433  CACACTGGACATTGGCGATGTACCTGAGACCATCACCGAGCCTTCAACCTCGACAGTTTC  492

Query  601  GAAACAAAAGAATGATGGGA--G--T-AGTGCATCGTCATC-T--TCGGGTATCCGCAAC  652
            ||||||||||||||| | ||  |  | | | |||| ||||| |  |||||||||| ||||
Sbjct  493  GAAACAAAAGAATGAAGCGAATGCATCA-T-CATCATCATCATCCTCGGGTATCCACAAC  550

Query  653  GCTAAC-GTATCCTCCTCCTGATTTGATCAGTCCTTaaaaaa  693
            || | | ||||||||||||||||||||| |||||||||||||
Sbjct  551  GC-ACCTGTATCCTCCTCCTGATTTGATGAGTCCTTAAAAAA  591



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34043764881


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5