BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25550.1
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942130 jgi|Araly1|942130|scaffold_602674.1 1956 0.0
> Ahg942130 jgi|Araly1|942130|scaffold_602674.1
Length=1348
Score = 1956 bits (1059), Expect = 0.0
Identities = 1235/1317 (94%), Gaps = 24/1317 (2%)
Strand=Plus/Plus
Query 1 ATGAGGATTTATCAACCAACCTTATTAAT-ATTCACCACCGTCGTCTTACTCTCCATCT- 58
||||||||||||||||| || ||||| || ||||||||||||||||||||||| |||||
Sbjct 21 ATGAGGATTTATCAACCGACGTTATT-ATCATTCACCACCGTCGTCTTACTCTACATCTC 79
Query 59 --CCGCCGTCGCTCCTGGTGGCTCCCGGCAACTTTTGTACACCCGAGACGACCCTATAAC 116
||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 80 CGCCGCCGTGGCTCGTGGTGGTTCCCGGCAACTTTTGTACACCCGAGACGACCCTATAAC 139
Query 117 CATACCTCCGTACCTAATATTCGAAAACGTACGGCTCGAAAGAGCTTACGTGGCGTTACA 176
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 140 CATACCTCCGTACCTAATCTTCGAAAACGTACGGCTCGAAAGAGCTTACGTGGCGTTACA 199
Query 177 AGCGTGGAAACGTGCCATGATCTCTGACCCGTGGAATCTGACAACTAACTGGTTTGGATC 236
||||||||||||| ||||||||||||||||||||||||| || |||||||||| |||||
Sbjct 200 AGCGTGGAAACGTACCATGATCTCTGACCCGTGGAATCTAACGGCTAACTGGTTCGGATC 259
Query 237 ACGTGTGTGCGACTACAACGGTGTAGTATGCTCCGAATCTCTCGACGACCCTTTGGTTAA 296
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 260 ACGTGTGTGCGACTACAACGGTGTAGTATGCTCATCATCTCTCGACGACCCTTTGGTTAA 319
Query 297 AACTGTCTCCGGTGTTGATCTAAACCAGGGAGATATCGCTGGTCATCTCCCTGAAGAGCT 356
|||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 320 AACTGTCTCCGGCGTTGATCTAAACCATGGAGATATCGCTGGTCACCTCCCTGAAGAGCT 379
Query 357 TGGCCTCTTAACCGATATTGCTCTGTTTCACGTTAACTCAAACCGGTTCTGTGGTACACT 416
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||
Sbjct 380 TGGCCTCTTAACCGATATTGCTCTGTTTCACGTTAACTCGAACCGGTTTTGTGGTACTCT 439
Query 417 CCCGGTCGGGTTTTCGCAGTTGAGTCTCCTTTTCGAACTTGATCTT-AGTAATAACCGGT 475
||||||||||||||||||||||||||||||||||||||| ||| || |||||||||||||
Sbjct 440 CCCGGTCGGGTTTTCGCAGTTGAGTCTCCTTTTCGAACTCGAT-TTAAGTAATAACCGGT 498
Query 476 TCGCTGGTAAATTCCCGGAAGTGGTAATCGGTTTACCGAAATTAAAGTATCTTGATCTCC 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 TCGCTGGTAAATTCCCGGAAGTGGTAATCGGTTTACCGAAATTAAAGTATCTTGATCTCC 558
Query 536 GGTACAACGAGTTTGAAGGTGAATTACCAGAATCTTTGTTCGATAAAGATCTTGACGCTT 595
|||||||||||||||||||| |||||||||||||| |||| |||||||| || ||||||
Sbjct 559 GGTACAACGAGTTTGAAGGTCAATTACCAGAATCTCTGTTTGATAAAGAACTAGACGCTC 618
Query 596 TATTCCTGAATAGTAACCGGTT--TAGAAGTAAAATCCCGGTTAACATGGGAAATTCACC 653
| |||||||||||||||||||| | || ||||||||||||||||||||| ||||| ||
Sbjct 619 TGTTCCTGAATAGTAACCGGTTCGTT-AA-TAAAATCCCGGTTAACATGGGGAATTCTCC 676
Query 654 GGTATCGGTTCTAGTTCTAGCCTCAAACCGGTTTGAAGGATGTATACCGCCGAGTTTCGG 713
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 677 GGTATCGGTTCTAGTTCTAGCATCAAACCGGTTTGAAGGATGTATACCGACGAGTTTCGG 736
Query 714 TAAAATGGGTAAGACTCTAAACGAGATCATTCTTATGGATAACGGTTTACAATCTTGTAT 773
|||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
Sbjct 737 TAAAATGGGTAAGACTCTAAACGAGATCATCCTAATGGATAACGGTTTACAATCTTGTCT 796
Query 774 ACCTAATGACATGGGATTACTTCAAAACGTTACGGTTTTGGACATTAGTTATAACTGGTT 833
||||||||||||||| |||||||||||||| || ||||||||| ||||||||||||||||
Sbjct 797 ACCTAATGACATGGGTTTACTTCAAAACGTCACCGTTTTGGACGTTAGTTATAACTGGTT 856
Query 834 GGTCGGAGAGTTACCTAAGTCGATGGGTCAGATGGAGAATCTTGAGGTGTTGAACGTTGA 893
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 857 GGTCGGAGAGTTACCAAAGTCGATGGGTCAGATGGAGAATCTTGAGGTGTTGAACGTTGA 916
Query 894 ACGTAACATGCTCTCCGGTTTAATACCGGATGAGCTATGTTCGCTTGAGAAGCTAAGAGA 953
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 917 ACGTAACATGCTCTCCGGTTTAATACCGGAGGAGTTATGTTCGCTTGAGAAGCTAAGAGA 976
Query 954 TTTTAGATACGGGTCTAACTATTTCACCGGAGAACCAGCCACGTGTCGCTATCTAGAGAA 1013
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 977 GTTTAGATACGGGTCTAACTATTTCACCGGAGAACCAGCCACGTGTCGTTATCTAGAGAA 1036
Query 1014 TTATAATTATACGATGAATTG-CTTCAAGGACGTGAGGGACCAAAGATCGATGATGGAGT 1072
|||||||||||| |||||||| || ||| |||| ||||||||||||||||||||||||||
Sbjct 1037 TTATAATTATACTATGAATTGTCT-CAAAGACGAGAGGGACCAAAGATCGATGATGGAGT 1095
Query 1073 GTAAGATGTTTTTGTCGAAACCTGTAGATTGTGACTCTTTCAAGTGTAGTCCTGGCTCTT 1132
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||
Sbjct 1096 GTAAGATGTTTTTGTCGAAACCTGTAGATTGTGACTCTTTTAAGTGTAATCCTGTCTCTT 1155
Query 1133 CGTGTTTTTCTCCTCCTCCGA-GTC--AAATATCACCATCTTCGCAACCATTGGCACCGG 1189
||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||
Sbjct 1156 CGTGTTTTTCTCCTCCTCCTCCGTCTCAAATATCACCGTCTTCGCAACCATTGGCACCGG 1215
Query 1190 CGCCATCTCCTACTTCA-CCACCATTGTCAACACCGCCTCCGGCTAGACCATGTCCGCCG 1248
|||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||
Sbjct 1216 CGCCATCTCCTACT-CAACCACCATTGTCACCACCGCCTCCGGCTAGACCATGTCCGCCG 1274
Query 1249 --G-TATACTCACCACCTCCACCACCACCATTGTCACTGGCGCCGTCTATGAACTGA 1302
| |||||||||| |||||||||||| ||||||| |||||||||||||||||||
Sbjct 1275 CCGATATACTCACCGCCTCCACCACCA---TTGTCACCGGCGCCGTCTATGAACTGA 1328
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48682965009
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5