BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25560.2
Length=1455
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489414 jgi|Araly1|489414|fgenesh2_kg.6__2548__AT5G25560.1 1810 0.0
> Ahg489414 jgi|Araly1|489414|fgenesh2_kg.6__2548__AT5G25560.1
Length=1260
Score = 1810 bits (980), Expect = 0.0
Identities = 1197/1293 (93%), Gaps = 50/1293 (4%)
Strand=Plus/Plus
Query 37 ATTTTATTCGTCGTCAGTTTC-ATC------TTGTTGCTTCGGAGCGAGCGAGAATTATC 89
||||||||||||||||||||| ||| || ||| |||||||| ||||||||||||
Sbjct 4 ATTTTATTCGTCGTCAGTTTCAATCGGAGATTTCTTGGTTCGGAGCTCGCGAGAATTATC 63
Query 90 GTCGGAGAATTTATCGTCTCTCTCTCTGAAAATTCTGATCGGTGAAGAATCGTCGGATCG 149
| ||||||||||| | | ||||||||||||||| ||||||||||||||||||||||
Sbjct 64 GCCGGAGAATTTA--G---C-GTCTCTGAAAATTCTGTTCGGTGAAGAATCGTCGGATCG 117
Query 150 AAAGTTTCATAAGCTTTCCATCAACTAGCAGTATCTGCCAATATCACAGACAGATAATTC 209
|||||||||||||||||||| || |||||||| |||||||||||||| ||||||||||||
Sbjct 118 AAAGTTTCATAAGCTTTCCACCAGCTAGCAGTGTCTGCCAATATCACTGACAGATAATTC 177
Query 210 GTAATGGGAGACGTATATTTCAACCATTTCGCTCAGCAACTGCAGATGTCTGACCAAGAG 269
|||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||
Sbjct 178 ATAATGGGAGACGTATATTTCAACCATTTCGCTGAGCAACCGCAGATGTTTGACCAAGAG 237
Query 270 AAGGGTGAAATGTCAAG-ACATTCACACCCTCATTCAATCAATGAAGAATCTGAGTCGTC 328
||||||||||||||||| | ||| ||||||||||||||||||||||| ||||| |||||
Sbjct 238 AAGGGTGAAATGTCAAGTA-ATTTGCACCCTCATTCAATCAATGAAGACTCTGAATCGTC 296
Query 329 AACTCTGGAAAGGGTAG-CAGCAGAGTCATTAACAAACAAAGTCCTTGATAGAGGACTAA 387
||||||||||||||| | ||||||||||||||| |||||||||||||| |||||||||||
Sbjct 297 AACTCTGGAAAGGGT-GACAGCAGAGTCATTAATAAACAAAGTCCTTGGTAGAGGACTAA 355
Query 388 TGGAGTATGGATGTCCACATTACAGAAGAAGGTGTTGCATTAGAGCTCCTTGCTGTAATG 447
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TGGAGCACGGATGTCCACATTACAGAAGAAGGTGTTGCATTAGAGCTCCTTGCTGTAATG 415
Query 448 AGATCTTTGGTTGCCATCACTGTCATTATGAGGCGAAGAACAACATAAATGTAGATCAGA 507
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 416 AGATCTTTGGTTGCCATCACTGTCATAATGAGGCGAAGAACAACATAAATGTAGATCAGA 475
Query 508 AGCAGAGGCATGATATTCCTCGCCACCAAGTTGAACAGGTTATTTGTTTACTTTGTGGTA 567
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 476 AGCAGAGGCATGATATTCCTCGCCACCAAGTTGAACAGGTTATTTGTTTACTCTGTGGTA 535
Query 568 CTGAACAAGAGGTGGGCCAAATTTGTATCCACTGTGGAGTGTGCATGGGGAAGTACTTCT 627
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 536 CTGAACAAGAGGTGGGCCAAATTTGTATCCATTGTGGAGTGTGCATGGGGAAGTACTTCT 595
Query 628 GTAAAGTCTGCAAGCTCTACGATGATGATACGTCTAAAAAACAGTACCACTGCGATGGGT 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 GTAAAGTCTGCAAGCTCTACGATGATGATACGTCTAAAAAACAGTACCACTGCGATGGGT 655
Query 688 GTGGAATTTGCAGAATCGGAGGACGTGAAAATTTCTTTCACTGTTACAAGTGTGGCTGTT 747
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 GTGGAATTTGCAGAATTGGAGGACGTGAAAATTTCTTTCACTGTTACAAGTGTGGCTGTT 715
Query 748 GTTATTCAATCCTCCTCAAGAACGGTCACCCTTGTGTCGAAGGAGCAATGCATCACGACT 807
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 716 GTTATTCAATCCTCCTCAAGAACAGTCACCCTTGTGTTGAAGGAGCAATGCATCACGACT 775
Query 808 GCCCCATTTGCTTTGAGTTTCTGTTTGAATCACGGAACGATGTGACGGTTTTACCATGTG 867
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 776 GCCCCATTTGCTTTGAGTTCCTGTTTGAATCACGGAACGATGTGACGGTTTTGCCATGTG 835
Query 868 GACACACAATTCATCAGAAGTGCTTGGAGGAAATGAGAGATCATTACCAATATGCGTGCC 927
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GACACACAATCCATCAGAAGTGCTTGGAGGAAATGAGAGATCATTACCAATATGCGTGCC 895
Query 928 CACTTTGCTCAAAATCTGTATGCGACATGTCAAAAGTGTGGGAGAAGTTTGACATGGAGA 987
|||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 896 CACTTTGCTCAAAATCCGTATGCGACATGTCAAAGGTGTGGGAGAAATTTGACATGGAGA 955
Query 988 TTGCGGCTACACCAATGCCAGAACCATACCAGAACAGAATGGT-CA-ATTCTCTGCAACG 1045
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 956 TTGCGGCTACACCAATGCCAGAACCATACCAGAACAGAATGGTGCAGATTCTCTGCAACG 1015
Query 1046 ACTGTGGGAAGAAAGCAGAGGTACAGTACCATGTGGTGGCTCAGAAATGCCCAAACTGCA 1105
|||||||||| ||| | |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1016 ACTGTGGGAAAAAATCGGAGGTAAAGTACCATGTGGTGGCTCAGAAATGCCCAAACTGCA 1075
Query 1106 AATCATACAACACTCGCCAAACCAGAGGCTGAAGCtttttttGAAGTT-GATTTGCTATC 1164
||||||||||||||||||||||| |||||||||||| ||||||||||| | |||||||||
Sbjct 1076 AATCATACAACACTCGCCAAACCCGAGGCTGAAGCTCTTTTTGAAGTTTG-TTTGCTATC 1134
Query 1165 AAATGCAATTAAGAGCTTTTCACTTGATCCAATAGTGTCATTGGATCCTTAACTTGAGGA 1224
| ||||||||||||||||| ||||||| | |||||||||||||| || | ||
Sbjct 1135 AGATGCAATTAAGAGCTTT-CACTTGAACGAATAGTGTCATTGG-TC-T---CT------ 1182
Query 1225 CTGGgtctctcgagtctatctcttctcactc-tcttcttcaatattctctgagtcgtctc 1283
| | ||||||||||||| |||| | ||||||||||||||||| ||||||||
Sbjct 1183 C-G---------AGTCTATCTCTTC--ACTCAT-TTCTTCAATATTCTCTGGGTCGTCTC 1229
Query 1284 ttGTTCACTA-GTCTATATGTTTCCTTGGTGTT 1315
|||||||||| |||||| || |||||||||||
Sbjct 1230 TTGTTCACTAAGTCTAT--GTCTCCTTGGTGTT 1260
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54430960105
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5