BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G25570.3

Length=710
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg489417 jgi|Araly1|489417|fgenesh2_kg.6__2551__AT5G25570.1         350    1e-95


> Ahg489417 jgi|Araly1|489417|fgenesh2_kg.6__2551__AT5G25570.1
Length=565

 Score =  350 bits (189),  Expect = 1e-95
 Identities = 207/215 (96%), Gaps = 3/215 (1%)
 Strand=Plus/Plus

Query  267  GAAATGTCACAGCAAGTTCAGATGGGGATGGAGAATATGCTCAAGATGGT---TTATGAA  323
            |||||||||||||||||||||||||| |||||||||||||||||||||||    ||||||
Sbjct  110  GAAATGTCACAGCAAGTTCAGATGGGAATGGAGAATATGCTCAAGATGGTCAAGTATGAA  169

Query  324  ATCGATCAAAACTCGGTTGGAATCAAGGAAGAGATTGAGAAATCAAAGGATTTTGCTATG  383
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct  170  ATCGATCAAAACTCTGTTGGAATCAAGGAAGAGATTGAGAAATCAAAGGATTTTGCTATG  229

Query  384  GAGAAGAAAAGGATCCTCGAGGAAGAGAAAGACCAGTTTCAGAAAGCTGCTTACACTATT  443
            |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  230  GAGAAGAAAAGGATTCTCGAGGAGGAGAAAGACCAGTTTCAGAAAGCTGCTTACACTATT  289

Query  444  CTAGACATGCTAAGCAACAGCCGAGGCTAAATCCA  478
            |||||||||||||||||||||||||||||||||||
Sbjct  290  CTAGACATGCTAAGCAACAGCCGAGGCTAAATCCA  324


 Score =  176 bits (95),  Expect = 2e-43
 Identities = 159/188 (85%), Gaps = 12/188 (6%)
 Strand=Plus/Plus

Query  481  TGATGCTCATGAAGAAACTATATCAGGTAAAGGAAATATTAGAAATGTCAACAAAGACTC  540
            |||||||| || ||||||||||||||||||||||||||||| ||||||||| ||||| ||
Sbjct  384  TGATGCTCTTGGAGAAACTATATCAGGTAAAGGAAATATTATAAATGTCAATAAAGAATC  443

Query  541  TCACTGGTTTGGTTTTGGATCCACATATA-T--AAGGTCGTATTAGCTTT-ACATTGCTA  596
            ||||||||||||| ||| ||| ||||| | |  |||||   ||||| ||| |||||||||
Sbjct  444  TCACTGGTTTGGTATTGTATCTACATACAATTTAAGGT---ATTAG-TTTCACATTGCTA  499

Query  597  TTACTGAAACTTTTATCACAAAGTGTGAATCCAGTA--TGCAGTATATATTCGTATTCAA  654
            ||| || |||||||||||||| |||||||| ||| |  | |||||||| | || ||| ||
Sbjct  500  TTATTGCAACTTTTATCACAATGTGTGAATTCAGAAAATCCAGTATAT-T-CGGATTGAA  557

Query  655  GTGAAAAA  662
            ||||||||
Sbjct  558  GTGAAAAA  565


 Score =  161 bits (87),  Expect = 5e-39
 Identities = 105/114 (92%), Gaps = 0/114 (0%)
 Strand=Plus/Plus

Query  62   ctctctctcGGCGATAATGGCGGAATCACCATCGCAGAGTGATGCACAGCTTGTTGCTCA  121
            ||||| || |||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct  1    CTCTCGCTTGGCGATAATGGCGGAATCACCATCTCACAGTGATGCTCAGCTTGTTGCTCA  60

Query  122  TCAATCTCCTGGTCAGCAAGCTGATTCGGATCTGACGTCTCTCGTCTTCGAAAT  175
            ||||||||||||||||||||| || ||||||||| | |||||||||||||||||
Sbjct  61   TCAATCTCCTGGTCAGCAAGCGGAATCGGATCTGGCTTCTCTCGTCTTCGAAAT  114



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26114198145


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5