BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G25580.1 Length=1466 Score E Sequences producing significant alignments: (Bits) Value Ahg489418 jgi|Araly1|489418|fgenesh2_kg.6__2552__AT5G25580.1 1690 0.0 Ahg891709 jgi|Araly1|891709|Al_scaffold_0007_3695 137 2e-31 > Ahg489418 jgi|Araly1|489418|fgenesh2_kg.6__2552__AT5G25580.1 Length=1403 Score = 1690 bits (915), Expect = 0.0 Identities = 1252/1401 (89%), Gaps = 77/1401 (5%) Strand=Plus/Plus Query 1 TCCCACAAAAACCCATTCATCTTCCACTTTCTCTCTCCGACGAAAATGGTAACGCTCCGC 60 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1 TCCCACAAAAACCCATTCATCTTCCACTTTCTCTCTCCGACAAAAATGGTAACGCTCCGC 60 Query 61 CAGAGGACGATGGTGGTCACCGGAGAACCGGAACAGAAGAAGGAAGAAGAACGACTCTGC 120 ||||||| || |||||| ||| ||||||| |||| ||| || | | | | Sbjct 61 CAGAGGAAGACGGTGGTGACCAGAGAACCTGAAC---CGAA-GATG--G-A--A------ 105 Query 121 GAAGACTTAACGATTCTTTCCTCCGATTCAGAC--AACGATTC-TTCCTCCGATTCGGCG 177 |||| ||||| | | || ||| |||| |||||||| |||||||||||| || Sbjct 106 GAAG----AACGA--C--T-CTGCGA---AGACTTAACGATTCTTTCCTCCGATTCAGCT 153 Query 178 GTGAAGCACTTGCGTGGACGTTGGGAACTTGCTTCGGTTCTCAATTTCTTCAATGTCTTT 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 154 GTGAAGCACTTGCGTGGACGTTGGGAACTTGCTTCGGTTCTCAATTTCTTCAATGTCTTT 213 Query 238 GGACCACTTGTCTCGGAGAAATTGAAGTTCACAGCTGAAGAAATTGAGATGGGTCTTATC 297 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 214 GGACCACTTGTCTCGGAGAAATTGAAGTTAACAGCTGAAGAAATTGAGATGGGTCTTATA 273 Query 298 GAGTCCAACACTACAAATGCTCAGCTTCACATTGCACTTTTGAAGGGGATACCACCGGTG 357 |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 274 GAGTCCAACACTACAAATGCTCAGCTTCACATAGCTCTTTTGAAGGGGATACCACCGGTG 333 Query 358 AATAAAACGCTTGACGATGCAAATGCATGGATCACGGTGTTGTGTAAGAAACTAGCTCCA 417 ||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 334 AATAAAACGCTAGACGATGCAAATGCTTGGATCACGGTGTTGTGTAAGAAACTTGCTCCA 393 Query 418 TGGTGGCCATGGATTGCTAAGGGTGAAATTCATATTACTGTTAACAAAGGGGAGGAAATA 477 ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| Sbjct 394 TGGTGGCCATGGATTGCTAAGGGTGAAATTCCTATTACTGCTAACAAAGGGGAGGAGATA 453 Query 478 TCTGAATACCAAGGACTTGACTCTATTAACCGCCTGAAGATT-TTGAAGGCACTTTGTGA 536 |||||||||||| |||||||| |||||||||||||||||||| || |||||||| ||||| Sbjct 454 TCTGAATACCAACGACTTGACCCTATTAACCGCCTGAAGATTCTT-AAGGCACTGTGTGA 512 Query 537 GCTTCGAGTTCAACAAGATGATGCACGTTCGTATATTCAAGAAAATACCAAGGAAGGAGA 596 |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 513 GCTTCGAGTTCAACAAGATGATGCTCGTACGTATATTCAAGAAAATACCAAGGAAGGAGA 572 Query 597 CTGGGATTC-TAGTTTACGCAAGAGGAAGCTAGGAGGAGATGGAAAGAAGACTTCTTATT 655 | ||||||| | |||| ||||| |||||| |||||||||||||||||||||| ||||| | Sbjct 573 CAGGGATTCCT-GTTTCCGCAAAAGGAAGTTAGGAGGAGATGGAAAGAAGACGTCTTACT 631 Query 656 GGTTTGATGGTAATGATATCCAAGGTTACAGATTATATAGGGAAGTCAATGGAATCTCAA 715 |||||||||||||||| ||||| || |||||| |||||||||||||||||| |||||||| Sbjct 632 GGTTTGATGGTAATGACATCCAGGGGTACAGAATATATAGGGAAGTCAATGAAATCTCAA 691 Query 716 AGAAGAATGCTGGCTCAGATTTATCTTGTTTGAGCTGGGAAACTGAAGCAACCAATCTAG 775 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 692 AGAAGAATGCTGGCTCAGATTTATCTTGTTTGAGCTGGGAAACTGAAGCAACCAATCTAG 751 Query 776 ATGAATTTCAGAGTGTCGCTAGAGAGTTATCATCAAGCAAAGCTTCTTCTTTGGCTGCAA 835 ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 752 ATGAATTTCAGAGAGTCGCTAGGGAGTTATCATCAAGCAAAGCTTCTTCTTTGGCTGCAA 811 Query 836 CTGGGCAG-ATGATTGAGACAGAAGCTATACCCGTTGTTgagaaatatcataaaaagaga 894 ||| | | ||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 812 TTGG-CGGGATGATTGAGACAGAAGCTATACCCGTTGTTGAGAAATATCATAAAAAGAAA 870 Query 895 gaaagggccataaaaaagaaaatgaaggaagagaTGGTCGTTAATGTCAATTTCTCGCGT 954 |||| |||||| ||||||||||||||| |||||||||| |||||| | | ||||| | Sbjct 871 GAAAAGGCCATGAAAAAGAAAATGAAGCAAGAGATGGTTGTTAAT-T---T--CTCGCTT 924 Query 955 CCTCTCCGAACTACTCGTTCTTGTCGTAACCACATGCCTGCTACTTACACCTTTGACGAG 1014 |||||||||||||| |||||||||||||| | |||||||||||||||||||||||| ||| Sbjct 925 CCTCTCCGAACTACCCGTTCTTGTCGTAATCGCATGCCTGCTACTTACACCTTTGATGAG 984 Query 1015 TATGACAAGATGATCAGTGATGCCGTGGAAGAAACAGAGGACACCGATGGAGATGAGGTA 1074 ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct 985 TATGACAAGATGATCAGTGATGCCGTGGAAGAATCAGAGGAAACCGATGGAGATGAGGTA 1044 Query 1075 GAAGGAAGGGATCAACAAAGTGCCTCATTGGAC--T-C--AA---A-CGAT---AAGTCA 1122 |||||||||| ||||||||| ||||| ||| | | || | | || |||||| Sbjct 1045 CAAGGAAGGGAGCAACAAAGTACCTCAAACGACAGTTCTGAAGGTAACAATGTGAAGTCA 1104 Query 1123 ACAGAGGTTGAAG-C-A-G---C--T-GAAATCCACAATGACGATGATAAAGAGAATGAG 1173 ||||||| || || | | | | | |||||| ||||||||||||| |||||||||||| Sbjct 1105 ACAGAGGATGTAGGCGATGAAGCACTTGAAATCAACAATGACGATGAAAAAGAGAATGAG 1164 Query 1174 ATAAGCAAGGAGGACGCAGAGCCAAAGGAAGAGTTTGGTGCCAAAAACAGGTTGAGACAA 1233 | ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1165 AAAAGCAAGGAGGACGCAGAGCCAAAGGAAGAGTTCGGTGCCAAAAACAGGTTGAGACAA 1224 Query 1234 AGAGTTACCAGGAACTCAGCCATCTGTTAATTTAAT-CCTCAATGTTGTTGAAGAAATAG 1292 ||||||||||||||||||||||||||||| ||||| ||||| ||||| ||||||||||| Sbjct 1225 AGAGTTACCAGGAACTCAGCCATCTGTTAGTTTAAAACCTCATTGTTGCTGAAGAAATAG 1284 Query 1293 TAAAAAGCTTTTGAACAACAAAACATCGTTTTGTCTGTTGGTGGAGAGACCAAGCTTTTT 1352 ||||||||||||||| | ||| ||||||||||||||||||||||||||| Sbjct 1285 TAAAAAGCTTTTGAAG---------T-GTT--GTCTGTTGGTGGAGAGACCAAGCTTTT- 1331 Query 1353 GATTAGAAGGTTTAGGACttt 1373 ||||||||||||||| ||||| Sbjct 1332 GATTAGAAGGTTTAGAACTTT 1352 Score = 97.1 bits (52), Expect = 3e-19 Identities = 52/52 (100%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 1395 TATATGATGATGATATACTCCATTCCTAACAGTGTAGATTTGACTCTTATTA 1446 |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1352 TATATGATGATGATATACTCCATTCCTAACAGTGTAGATTTGACTCTTATTA 1403 > Ahg891709 jgi|Araly1|891709|Al_scaffold_0007_3695 Length=276 Score = 137 bits (74), Expect = 2e-31 Identities = 85/90 (94%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 799 GAGTTATCATCAAGCAAAGCTTCTTCTTTGGCTGCAACTGG-GCAGATGATTGAGACAGA 857 ||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||| Sbjct 58 GAGTTATCATCAAGCAAAGCTTCTTCTTTGGCTGCAATTGGTGG-GATGATTGAGACAGA 116 Query 858 AGCTATACCCGTTGTTgagaaatatcataa 887 ||||||||| |||||||||||||||||||| Sbjct 117 AGCTATACCAGTTGTTGAGAAATATCATAA 146 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 54849952800 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5