BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25580.1
Length=1466
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489418 jgi|Araly1|489418|fgenesh2_kg.6__2552__AT5G25580.1 1690 0.0
Ahg891709 jgi|Araly1|891709|Al_scaffold_0007_3695 137 2e-31
> Ahg489418 jgi|Araly1|489418|fgenesh2_kg.6__2552__AT5G25580.1
Length=1403
Score = 1690 bits (915), Expect = 0.0
Identities = 1252/1401 (89%), Gaps = 77/1401 (5%)
Strand=Plus/Plus
Query 1 TCCCACAAAAACCCATTCATCTTCCACTTTCTCTCTCCGACGAAAATGGTAACGCTCCGC 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 TCCCACAAAAACCCATTCATCTTCCACTTTCTCTCTCCGACAAAAATGGTAACGCTCCGC 60
Query 61 CAGAGGACGATGGTGGTCACCGGAGAACCGGAACAGAAGAAGGAAGAAGAACGACTCTGC 120
||||||| || |||||| ||| ||||||| |||| ||| || | | | |
Sbjct 61 CAGAGGAAGACGGTGGTGACCAGAGAACCTGAAC---CGAA-GATG--G-A--A------ 105
Query 121 GAAGACTTAACGATTCTTTCCTCCGATTCAGAC--AACGATTC-TTCCTCCGATTCGGCG 177
|||| ||||| | | || ||| |||| |||||||| |||||||||||| ||
Sbjct 106 GAAG----AACGA--C--T-CTGCGA---AGACTTAACGATTCTTTCCTCCGATTCAGCT 153
Query 178 GTGAAGCACTTGCGTGGACGTTGGGAACTTGCTTCGGTTCTCAATTTCTTCAATGTCTTT 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 154 GTGAAGCACTTGCGTGGACGTTGGGAACTTGCTTCGGTTCTCAATTTCTTCAATGTCTTT 213
Query 238 GGACCACTTGTCTCGGAGAAATTGAAGTTCACAGCTGAAGAAATTGAGATGGGTCTTATC 297
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 214 GGACCACTTGTCTCGGAGAAATTGAAGTTAACAGCTGAAGAAATTGAGATGGGTCTTATA 273
Query 298 GAGTCCAACACTACAAATGCTCAGCTTCACATTGCACTTTTGAAGGGGATACCACCGGTG 357
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 274 GAGTCCAACACTACAAATGCTCAGCTTCACATAGCTCTTTTGAAGGGGATACCACCGGTG 333
Query 358 AATAAAACGCTTGACGATGCAAATGCATGGATCACGGTGTTGTGTAAGAAACTAGCTCCA 417
||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 334 AATAAAACGCTAGACGATGCAAATGCTTGGATCACGGTGTTGTGTAAGAAACTTGCTCCA 393
Query 418 TGGTGGCCATGGATTGCTAAGGGTGAAATTCATATTACTGTTAACAAAGGGGAGGAAATA 477
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||
Sbjct 394 TGGTGGCCATGGATTGCTAAGGGTGAAATTCCTATTACTGCTAACAAAGGGGAGGAGATA 453
Query 478 TCTGAATACCAAGGACTTGACTCTATTAACCGCCTGAAGATT-TTGAAGGCACTTTGTGA 536
|||||||||||| |||||||| |||||||||||||||||||| || |||||||| |||||
Sbjct 454 TCTGAATACCAACGACTTGACCCTATTAACCGCCTGAAGATTCTT-AAGGCACTGTGTGA 512
Query 537 GCTTCGAGTTCAACAAGATGATGCACGTTCGTATATTCAAGAAAATACCAAGGAAGGAGA 596
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 513 GCTTCGAGTTCAACAAGATGATGCTCGTACGTATATTCAAGAAAATACCAAGGAAGGAGA 572
Query 597 CTGGGATTC-TAGTTTACGCAAGAGGAAGCTAGGAGGAGATGGAAAGAAGACTTCTTATT 655
| ||||||| | |||| ||||| |||||| |||||||||||||||||||||| ||||| |
Sbjct 573 CAGGGATTCCT-GTTTCCGCAAAAGGAAGTTAGGAGGAGATGGAAAGAAGACGTCTTACT 631
Query 656 GGTTTGATGGTAATGATATCCAAGGTTACAGATTATATAGGGAAGTCAATGGAATCTCAA 715
|||||||||||||||| ||||| || |||||| |||||||||||||||||| ||||||||
Sbjct 632 GGTTTGATGGTAATGACATCCAGGGGTACAGAATATATAGGGAAGTCAATGAAATCTCAA 691
Query 716 AGAAGAATGCTGGCTCAGATTTATCTTGTTTGAGCTGGGAAACTGAAGCAACCAATCTAG 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 AGAAGAATGCTGGCTCAGATTTATCTTGTTTGAGCTGGGAAACTGAAGCAACCAATCTAG 751
Query 776 ATGAATTTCAGAGTGTCGCTAGAGAGTTATCATCAAGCAAAGCTTCTTCTTTGGCTGCAA 835
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 752 ATGAATTTCAGAGAGTCGCTAGGGAGTTATCATCAAGCAAAGCTTCTTCTTTGGCTGCAA 811
Query 836 CTGGGCAG-ATGATTGAGACAGAAGCTATACCCGTTGTTgagaaatatcataaaaagaga 894
||| | | ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 812 TTGG-CGGGATGATTGAGACAGAAGCTATACCCGTTGTTGAGAAATATCATAAAAAGAAA 870
Query 895 gaaagggccataaaaaagaaaatgaaggaagagaTGGTCGTTAATGTCAATTTCTCGCGT 954
|||| |||||| ||||||||||||||| |||||||||| |||||| | | ||||| |
Sbjct 871 GAAAAGGCCATGAAAAAGAAAATGAAGCAAGAGATGGTTGTTAAT-T---T--CTCGCTT 924
Query 955 CCTCTCCGAACTACTCGTTCTTGTCGTAACCACATGCCTGCTACTTACACCTTTGACGAG 1014
|||||||||||||| |||||||||||||| | |||||||||||||||||||||||| |||
Sbjct 925 CCTCTCCGAACTACCCGTTCTTGTCGTAATCGCATGCCTGCTACTTACACCTTTGATGAG 984
Query 1015 TATGACAAGATGATCAGTGATGCCGTGGAAGAAACAGAGGACACCGATGGAGATGAGGTA 1074
||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||
Sbjct 985 TATGACAAGATGATCAGTGATGCCGTGGAAGAATCAGAGGAAACCGATGGAGATGAGGTA 1044
Query 1075 GAAGGAAGGGATCAACAAAGTGCCTCATTGGAC--T-C--AA---A-CGAT---AAGTCA 1122
|||||||||| ||||||||| ||||| ||| | | || | | || ||||||
Sbjct 1045 CAAGGAAGGGAGCAACAAAGTACCTCAAACGACAGTTCTGAAGGTAACAATGTGAAGTCA 1104
Query 1123 ACAGAGGTTGAAG-C-A-G---C--T-GAAATCCACAATGACGATGATAAAGAGAATGAG 1173
||||||| || || | | | | | |||||| ||||||||||||| ||||||||||||
Sbjct 1105 ACAGAGGATGTAGGCGATGAAGCACTTGAAATCAACAATGACGATGAAAAAGAGAATGAG 1164
Query 1174 ATAAGCAAGGAGGACGCAGAGCCAAAGGAAGAGTTTGGTGCCAAAAACAGGTTGAGACAA 1233
| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1165 AAAAGCAAGGAGGACGCAGAGCCAAAGGAAGAGTTCGGTGCCAAAAACAGGTTGAGACAA 1224
Query 1234 AGAGTTACCAGGAACTCAGCCATCTGTTAATTTAAT-CCTCAATGTTGTTGAAGAAATAG 1292
||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||
Sbjct 1225 AGAGTTACCAGGAACTCAGCCATCTGTTAGTTTAAAACCTCATTGTTGCTGAAGAAATAG 1284
Query 1293 TAAAAAGCTTTTGAACAACAAAACATCGTTTTGTCTGTTGGTGGAGAGACCAAGCTTTTT 1352
||||||||||||||| | ||| |||||||||||||||||||||||||||
Sbjct 1285 TAAAAAGCTTTTGAAG---------T-GTT--GTCTGTTGGTGGAGAGACCAAGCTTTT- 1331
Query 1353 GATTAGAAGGTTTAGGACttt 1373
||||||||||||||| |||||
Sbjct 1332 GATTAGAAGGTTTAGAACTTT 1352
Score = 97.1 bits (52), Expect = 3e-19
Identities = 52/52 (100%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 1395 TATATGATGATGATATACTCCATTCCTAACAGTGTAGATTTGACTCTTATTA 1446
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1352 TATATGATGATGATATACTCCATTCCTAACAGTGTAGATTTGACTCTTATTA 1403
> Ahg891709 jgi|Araly1|891709|Al_scaffold_0007_3695
Length=276
Score = 137 bits (74), Expect = 2e-31
Identities = 85/90 (94%), Gaps = 2/90 (2%)
Strand=Plus/Plus
Query 799 GAGTTATCATCAAGCAAAGCTTCTTCTTTGGCTGCAACTGG-GCAGATGATTGAGACAGA 857
||||||||||||||||||||||||||||||||||||| ||| | |||||||||||||||
Sbjct 58 GAGTTATCATCAAGCAAAGCTTCTTCTTTGGCTGCAATTGGTGG-GATGATTGAGACAGA 116
Query 858 AGCTATACCCGTTGTTgagaaatatcataa 887
||||||||| ||||||||||||||||||||
Sbjct 117 AGCTATACCAGTTGTTGAGAAATATCATAA 146
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54849952800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5