BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25590.1
Length=2487
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942134 jgi|Araly1|942134|scaffold_602678.1 3448 0.0
> Ahg942134 jgi|Araly1|942134|scaffold_602678.1
Length=2344
Score = 3448 bits (1867), Expect = 0.0
Identities = 2216/2378 (93%), Gaps = 50/2378 (2%)
Strand=Plus/Plus
Query 51 aaaaaaaG-CCTCACTTTTTACAAATGGGTTGTGCTCAATCTAGGGTTGATAACGAAGAA 109
|||||||| |||| | ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAAAAGACCTCTC-CTTTCCAAATGGGTTGTGCTCAATCTAGGGTTGATAACGAAGAA 59
Query 110 GCAGTAGCTAGATGCAAAGAACGACGAAACGTAATCAAAGAAGCAGTTTCCGCAAGCAAA 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GCAGTAGCTAGATGCAAAGAACGACGAAACGTAATCAAAGAAGCAGTTTCCGCAAGCAAA 119
Query 170 GCATTCGCCGCCGGTCATTTCGCTTACGCTATTGCTTTGAAAAACACTGGTGCTGCTTTA 229
|| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 120 GCTTTCGCCGCCGGTCATTTCGCTTACGCTATTGCTTTGAAGAACACAGGTGCTGCTTTA 179
Query 230 AGTGACTATGGCCATGGCGAATCTGATCAAAAAGCTTTAGACGATGTGTTGTTAGATCAA 289
||||||||||| ||||| ||||||||||||||||||||||| || |||| |||||||||
Sbjct 180 AGTGACTATGGTCATGGTGAATCTGATCAAAAAGCTTTAGATGA--TGTT-TTAGATCAA 236
Query 290 CAACATTACGAGAAACAGAGTCGTAACAATGTAGATCCGGCTTCTCCTCAGCCACCTCCT 349
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 237 CAACATTACGAGAAACAGAGTCGTAACAATGTAGATCCGGCTGCTTCTCAGCCACCTCCT 296
Query 350 CCACCGCCTATTGAGAATCTTCCTCCTCCGCCTCCTCCTTTGCCTAAATTCTCTCCTTCT 409
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 CCGCCACCTATTGAGAATCTTCCTCCTCCGCCTCCTCCTTTGCCTAAATTCTCTCCTTCT 356
Query 410 CCGATTAAACGTGCGATTAGTTTGCCTTCTATGGCGGTTAGAGGTCGAAAGGTTCAGACT 469
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 357 CCGATTAAACGTGCGATTAGTTTGCCGTCTATGGCGGTTAGAGGTCGAAAGGTTCAGACT 416
Query 470 TTAGATGGTATGGCGATTgaggaagaggaagaagatgaagaggaggaagaggaagTTAAG 529
||||||| |||||||||||||||||| ||||||||||| || |||||||||||||| |||
Sbjct 417 TTAGATGCTATGGCGATTGAGGAAGAAGAAGAAGATGAGGAAGAGGAAGAGGAAGTGAAG 476
Query 530 GGTAGTGGTAGAGACACTGCTC---AGGAGGAGGAGGAACCGAGAACGCCGGAGAATGTT 586
||||||| || || |||||||| |||||||||| ||||||||||||||||||||||||
Sbjct 477 GGTAGTGATATAGTCACTGCTCGTAAGGAGGAGGAAGAACCGAGAACGCCGGAGAATGTT 536
Query 587 GGGAAGAGTAATGGGAGGAAGAGATTGGAGAAAACAACGCCGGAGATTGTGAGTGCTTCT 646
||||||| ||||||||||||||| ||||||| |||||||||||||||||| ||||||||
Sbjct 537 GGGAAGAATAATGGGAGGAAGAGGTTGGAGACGACAACGCCGGAGATTGTGCGTGCTTCT 596
Query 647 CCGGCAAATAGTATGGCTTGGGATTATTTTTTCATGGTGGAGAATATGCCTGGACCTAAT 706
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CCGGCGAATAGTATGGCTTGGGATTATTTTTTCATGGTGGAGAATATGCCTGGACCTAAT 656
Query 707 TTAGATGATAGAGAGGTTAGGAATGGTTATGAGAATCAGAGTAGTCATTTTCAGTTTAAT 766
||||||||||||||| |||| ||||||||||||||||| |||| ||||||||||||||||
Sbjct 657 TTAGATGATAGAGAGATTAGAAATGGTTATGAGAATCAAAGTAATCATTTTCAGTTTAAT 716
Query 767 GAAGAGGATGATGAAGAAGAAGAGGAAGAGGAAAGATCTGGGATATATCGGAAGAAGTCT 826
|||||||||||| |||| | | | | | | |||| || | ||| ||||
Sbjct 717 GAAGAGGATGAT---GAAG-A-A-G-A-A-G-AAGA----GG----A----AAG--GTCT 752
Query 827 GGTTCTGGTAAAGTAGTTGAGGAGATGGAGCCTAAGACGCCggagaaagttgaagaagaa 886
|||||| |||| ||||||||||| |||||||| ||||||||||||||||||||||||| |
Sbjct 753 GGTTCTCGTAAGGTAGTTGAGGAAATGGAGCCGAAGACGCCGGAGAAAGTTGAAGAAG-A 811
Query 887 gaggaggaagatgaggaagaggatgaggaagaggaagaggaggaggaagaagaagtggtg 946
| || || |||||||| |||||||||||||| | ||||| | ||||||||| |||
Sbjct 812 -A-GATGATGATGAGGAGGAGGATGAGGAAGA-G--GAGGA--A-GAAGAAGAA---GTG 860
Query 947 gtggaggtaaagaagaagaagaaagggaaagctaagaTTGAGCATTCG-AGTACTGCTCC 1005
|||||||| ||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 861 GTGGAGGTGAAGAAGAAGAAGAAAGGGAAAGCTAAGATTGAGCATTCGTA-TACTGCTCC 919
Query 1006 ACCGGAGTTTCGGCGTGCGGTTGCTAAG---ACTAGTGCTGCTGCATCATCAAGTGTGAA 1062
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 920 ACCGGAGTTTCGGCGTGCGGTTGCTAAGACTACTAGTGCTGCTGCATCATCAAGTGTGAA 979
Query 1063 TTTGATGAAGATTCTTGATGAGATTGATGATAGATTCCTTAAGGCTTCAGAATGTGCTCA 1122
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 980 TTTGATGAAGATTCTTGATGAGATTGATGATAGATTCCTTAAGGCGTCAGAATGTGCTCA 1039
Query 1123 AGAGGTTTCTAAGATGCTTGAAGCTACAAGGTTACATTACCACTCGAATTTTGCAGATAA 1182
|||||| |||||||||||||||||||||||||||||||| ||||||||||| || |||||
Sbjct 1040 AGAGGTCTCTAAGATGCTTGAAGCTACAAGGTTACATTATCACTCGAATTTCGCTGATAA 1099
Query 1183 CCGAGGATATGTTGATCATTCAGCTAGAGTAATGCGGGTTATAACTTGGAATAAATCGTT 1242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 CCGAGGATATGTTGATCATTCAGCTAGAGTAATGCGGGTTATAACTTGGAATAAATCGTT 1159
Query 1243 AAGAGGCATTTCGAATGGAGAAGGTGGAAAAGATGATCAAGAATCAGATGAGCATGAAAC 1302
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1160 AAGAGGCATATCCAATGGAGAAGGTGGAAAAGATGATCAAGAATCAGATGAGCATGAAAC 1219
Query 1303 TCATGCTACGGTGTTGGATAAATTGTTAGCATGGGAGAAGAAACTCTATGATGAAGTGAA 1362
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1220 TCATGCTACGGTGTTGGATAAATTGTTGGCGTGGGAGAAGAAACTCTATGATGAAGTGAA 1279
Query 1363 GCAAGGTGAGCTTATGAAGATAGAGTATCAGAAGAAGGTATCTTTACTCAACAGGCATAA 1422
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1280 GCAAGGTGAGCTTATGAAGATAGAGTATCAGAAGAAGGTATCTTTACTAAACAGGCATAA 1339
Query 1423 GAAACGAGGTGCGAGTGCAGAGACCGTGGAGAAAACAAAGGCGGCTGTAAGTCATCTACA 1482
||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 1340 AAAACGAGGTGCGAGTGCTGAAACCGTGGAGAAAACAAAGGCGGCTGTGAGTCATCTACA 1399
Query 1483 CACAAGATATATTGTTGACATGCAATCCATGGATTCAACGGTTTCTGAAGTAAACCGTTT 1542
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1400 CACAAGATATATCGTTGACATGCAATCCATGGATTCAACGGTTTCCGAAGTAAACCGTTT 1459
Query 1543 AAGGGATGATCAATTGTATCCAAGACTTGTTGCCTTAGTTGAAGGGATGGCGAAGATGTG 1602
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1460 AAGGGATGATCAATTGTATCCAAGACTTGTTGCCTTAGTTGAAGGAATGGCGAAGATGTG 1519
Query 1603 GACAAACATGTGTATACACCACGACACCCAACTAGGTATTGTTGGAGAGCTAAAGGCCCT 1662
|||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1520 GACAAACATGTGCATACACCATGACACCCAACTAGGTATTGTTGGAGAGCTAAAATCCCT 1579
Query 1663 TGAAATCTCAACTTCTCTCAAAGAAACCACAAAACAGCATCACCATCAGACTCGCCAGTT 1722
||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1580 TGAAATCTCAACTTCTCTCAAAGAAACCACAAAGCAACATCACCATCAGACCCGCCAGTT 1639
Query 1723 CTGCACCGTCTTGGAAGAATGGCATGTTCAGTTCGATACACTTGTCACCCATCAGAAGCA 1782
|||||| |||||||||||||||||| |||||||||||| ||| || ||||| ||||||||
Sbjct 1640 CTGCACAGTCTTGGAAGAATGGCATATTCAGTTCGATAGACTCGTGACCCACCAGAAGCA 1699
Query 1783 GTACATTAACTCTCTCAACAACTGGCTGAAGCTAAATCTAATCCCCATCGAGAGTAGTCT 1842
|||||||||| ||||||||| |||| | |||||||| || |||||||| ||||| |||||
Sbjct 1700 GTACATTAACGCTCTCAACAGCTGGTTAAAGCTAAACCTTATCCCCATTGAGAGCAGTCT 1759
Query 1843 TAAAGAGAAAGTTTCATCACCTCCAAGGCCTCAGCGCCCGCCAATCCAAGCTCTTCTCCA 1902
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1760 TAAAGAGAAAGTTTCATCACCTCCAAGGCCTCAGCGCCCGCCAATCCAAGCCCTTCTCCA 1819
Query 1903 CTCATGGCATGACCGTCTTGAGAAACTTCCCGATGAAGTCGCCAAATCAGCTATCTCCTC 1962
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1820 CTCATGGCACGACCGTCTTGAGAAACTTCCCGATGAAGTCGCCAAATCAGCTATTTCCTC 1879
Query 1963 TTTCGCGGCAGTCATCAAAACCATCTTGCTGCACCAGGAAGAGGAGATGAAACTGAAAGA 2022
||| || | |||||||||||||||||| || || ||||| || || ||||||||||| ||
Sbjct 1880 TTTTGCCGAAGTCATCAAAACCATCTTACTTCATCAGGAGGATGAAATGAAACTGAAGGA 1939
Query 2023 GAAATGCGAAGAAACACGAAGAGAGTTTATACGGAAGAAGCAAGGTTTTGAGGATTGGTA 2082
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 1940 GAAATGCGAAGAAACACGAAGGGAGTTTATACGGAAGAAACAAGGTTTTGAGGATTGGTA 1999
Query 2083 TCAAAAACATTTGCAAAAGAGAGGGCCAACAGAGGAAGCTGAAGGCGGGGACGACGCAAC 2142
||| ||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 2000 TCAGAAACATTTGCAGAAGAGAGGACCAACAGAGGAAGCTGAAGGCGGGGACGACACAAC 2059
Query 2143 AACAAGCTCCAGAGATCATGTCACAGAGAGGAGAATTGCTGTGGAGACACTgaagaaaag 2202
||| ||| | || |||||||| ||||| |||||||||| ||||||||||||||| |||||
Sbjct 2060 AACGAGCGCTAGGGATCATGTGACAGAAAGGAGAATTGTTGTGGAGACACTGAAAAAAAG 2119
Query 2203 gcttgaagaagaagaagaagCTCACCAGAGACATTGTGTTCAGGTGAGGGAGAAATCTCT 2262
|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2120 ACTTGAAGAGGAAGAAGAAGCTCACCAGAGACATTGTGTTCAGGTAAGGGAGAAATCTCT 2179
Query 2263 AAACAGTTTGAAGATCAGATTGCCTGAGATCTTCAGGGCACTGTCTGATTATGCTCACGC 2322
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2180 CAACAGTTTGAAGATCAGATTGCCTGAGATCTTCAGGGCACTGTCTGATTATGCTCACGC 2239
Query 2323 TTGTGCTGACTCATATGAGAAGCTCAGAATCATATCGCAGAGTCAGAAATCAAACGGTGG 2382
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2240 TTGTGCTGACTCATACGAGAAGCTCAGAATCATATCGCAGAGTCACAAATCAAACGGTGG 2299
Query 2383 AGCCACTGAATCTTCTTGAACCAGTTTTAGTTCTATTT 2420
|||||||||||||||||||||||||||||||||| |||
Sbjct 2300 AGCCACTGAATCTTCTTGAACCAGTTTTAGTTCT-TTT 2336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 93740092945
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5