BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25610.1
Length=1560
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489420 jgi|Araly1|489420|fgenesh2_kg.6__2554__AT5G25610.1 2422 0.0
Ahg925873 jgi|Araly1|925873|scaffold_201434.1 414 8e-115
> Ahg489420 jgi|Araly1|489420|fgenesh2_kg.6__2554__AT5G25610.1
Length=1557
Score = 2422 bits (1311), Expect = 0.0
Identities = 1483/1565 (95%), Gaps = 16/1565 (1%)
Strand=Plus/Plus
Query 1 TCATAACTTCAACCTCAGCTCCTTTCTACTAAAACCCTTTTACTATAAATTCTACGTACA 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 TCATAACTTCAACCTCAGCTGCTTTCTACTAAAACCCTTTTACTATAAATTCTACGTACA 60
Query 61 CGTACCACTTCTTCTCCTCAAATTCATCAAACCCATTTCTATTCCAACTCCCAAAAATGG 120
| | ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 61 CTTGCCACTTCTTCTCCTCAAATTCATCAAACCCATTTCAATTCCAACCCCCAAAAATGG 120
Query 121 CGATTCGTCTTCCTCTGATCTGTCTTCTTGGTTCATTCATGGTAGTGGCGATTGCGGCTG 180
| |||||||||||| |||||||||||||||||||||||||||| || |||||||||||||
Sbjct 121 CTATTCGTCTTCCTGTGATCTGTCTTCTTGGTTCATTCATGGTCGTAGCGATTGCGGCTG 180
Query 181 ATTTAACACCGGAGCGTTATTGGAGCACTGCTTTACCAAACACTCCCATTCCCAACTCTC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 ATTTAACACCGGAGCGTTATTGGAGCACTGCTTTACCAAACACTCCCATTCCCAACTCTC 240
Query 241 TCCATAATCTTTTGACT-TTCGATTTTACCGACGAGAAAAGTACCAACGTCCAAGTAGGT 299
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCATAATCTTTTGACTCTT-GATTTTACCGACGAGAAAAGTACCAACGTCCAAGTAGGT 299
Query 300 AAAGGCGGAGTAAACGTTAACACCCATAAAGGTAAAACCGGTAGCGGAACCGCCGTGAAC 359
|||||||| |||||||||||| |||||||||||||| |||| |||||||||||||||||
Sbjct 300 AAAGGCGGCGTAAACGTTAACGCCCATAAAGGTAAACCCGGCGGCGGAACCGCCGTGAAC 359
Query 360 GTTGGAAAGGGAGGTGTACGCGTGGACACAGGCAAGGGCAAGCCCGGAGGAGGGACACAC 419
||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 360 GTTGGAAAGGGAGGTGTACGCGTGGACACGGGCAAGGGTAAGCCCGGAGGAGGGACACAC 419
Query 420 GTGAGCGTTGGCAGCGGAAAAGGTCACGGAGGTGGCGTCGCAGTCCACACGGGTAAACCC 479
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTTAGCGTTGGCAGCGGAAAAGGTCACGGAGGTGGCGTCGCAGTCCACACGGGTAAACCC 479
Query 480 GGTAAAAGAACCGACGTAGGAGTCGGTAAAGGCGGTGTGACGGTGCACACGCGCCACAAG 539
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GGTAAGAGAACCGACGTAGGAGTCGGTAAAGGCGGTGTGACGGTGCACACGCGCCACAAG 539
Query 540 GGAAGACCGATTTACGTTGGTGTGAAACCAGGAGCAAACCCTTTCGTGTATAACTATGCA 599
|||||||| |||||||| ||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 540 GGAAGACCTATTTACGTCGGTGTGAAACCAGGAGCCAACCCTTTCGTATATAACTATGCA 599
Query 600 GCGAAGGAGACTCAGCTCCACGACGATCCTAACGCGGCTCTCTTCTTCTTGGAGAAGGAC 659
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 600 GCAAAGGAGACTCAGCTCCACGATGATCCTAACGCGGCTCTCTTCTTCTTGGAGAAGGAC 659
Query 660 TTGGTTCGC-GGGAAAGAAATGAATGTCCGGTTTAACGCTGAGGATGGTTACGGAGGCAA 718
||||||| | || |||| ||||| |||||||||||||| ||||||||||||||||||||
Sbjct 660 TTGGTTC-CTGGAAAAGCTATGAACGTCCGGTTTAACGCGGAGGATGGTTACGGAGGCAA 718
Query 719 AACTGCGTTCTTGCCACGTGGAGAGGCTGAAACGGTGCCTTTTGGATCGGAGAAGTTTTC 778
||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct 719 AACTGCGTTCTTGCCACGTGGAGAGGCGGAAACGGTGCCGTTTGGGTCGGAGAAGTTTTC 778
Query 779 GGAGACGTTGAAACGTTTCTCGGTGGAAGCTGGTTCGGAAGAAGCGGAGATGATGAAGAA 838
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 779 GGAGACGTTGAAACGTTTCTCTGTGGAAGCTGGTTCGGAAGAAGCGGAGATGATGAAGAA 838
Query 839 GACCATTGAGGAGTGTGAAGCCAGAAAAGTTAGTGGAGAGGAGAAGTATTGTGCGACGTC 898
||| ||||| ||||||||||| | |||||| ||||||| ||||||||||||||||||||
Sbjct 839 GACGATTGACGAGTGTGAAGCGAAAAAAGTCGGTGGAGAAGAGAAGTATTGTGCGACGTC 898
Query 899 TTTGGAGTCGATGGTCGACTTTAGTGTTTCGAAACTTGGTAAATATCACGTCAGGGCTGT 958
| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 899 TCTGGAGTCGATGGTCGATTTTAGTGTTTCGAAACTTGGGAAATATCACGTCAGGGCTGT 958
Query 959 TTCCACTGAGGTGGCTAAGAAGAACGCACCGATGCAGAAGTACAAAATCGCGGCGGCTGG 1018
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TTCCACTGAGGTGGCTAAGAAGAACGCACCGATGCAGAAGTACAAAATCGCGGCGGCTGG 1018
Query 1019 GGTAAAGAAGTTGTCTGACGATAAATCTGTGGTGTGTCACAAACAGAAGTACCCATTCGC 1078
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 1019 GGTAAAGAAGTTGTCTGACGACAAATCGGTGGTGTGTCACAAACAGAAGTACCCATTTGC 1078
Query 1079 GGTGTTCTACTGCCACAAGGCGATGATGACGACCGTCTACGCGGTTCCGCTCGAGGGAGA 1138
||||||||||| ||||||||||||||||||||||||||||||||||| || || |||||
Sbjct 1079 TGTGTTCTACTGTCACAAGGCGATGATGACGACCGTCTACGCGGTTCCACTAGAAGGAGA 1138
Query 1139 GAACGGGATGCGAGCTAAAGCAGTTGCGGTATGCCACAAGAACACCTCAGCTTGGAACCC 1198
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1139 GAACGGGATGCGAGCTAAAGCAGTTGCGGTGTGCCACAAGAACACCTCAGCGTGGAACCC 1198
Query 1199 AAACCACTTGGCCTTCAAAGTC-TTAAAGGTGAAGCCAGGGACCGTTCCGGTCTGCCACT 1257
|||||||||||||||||||||| |||| |||||||||||| |||||||| ||||||||||
Sbjct 1199 AAACCACTTGGCCTTCAAAGTCCTTAA-GGTGAAGCCAGGAACCGTTCCCGTCTGCCACT 1257
Query 1258 TCCTCCCGGAGACTCATGTTGTGTGGTTCAGCTACTAGATAGATCTGTTTTCTATCTTAT 1317
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1258 TCCTCCCGGAGTCTCATGTTGTGTGGTTCAGCTACTAGATAGATCTGTTGTCTATCTT-T 1316
Query 1318 TGTGGGTTAT--GTATAATTACGTTTCAGATAATCTATCTTTTGGGATGTTTTGGTTATG 1375
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1317 TGTGGGTTATATGTATAATTACGTTTCAGATAATCTATCTTTTGGGATGTTTTGGTTATG 1376
Query 1376 AATATACATACATATACATATAGTAATGCGTGGTTTCCATATAAGAGTGAAGGCATCTAT 1435
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 AAGATACATACATATACATATAGTAATGCGTGGTTTCCATATAAGAGTGAAGGCATCTAT 1436
Query 1436 ATGtttttttttttATTAACCTACGTAGCTGTCTTTTGTGGTCTG-TATCTTGTGGTTTT 1494
|||||| |||||| | ||||||||||||||||||||||||| || | ||||||| ||||
Sbjct 1437 ATGTTTCTTTTTTAAA-AACCTACGTAGCTGTCTTTTGTGGTTTGCT-TCTTGTGTTTTT 1494
Query 1495 GCAA-AAACCTATAATAAAATTAGAGCTGAAATGTTACCATTTCTATGTTTTG-GCTTAA 1552
|||| ||| |||||||||||||||| |||||||||||||||||||||||||| | | ||
Sbjct 1495 GCAAGAAAA-TATAATAAAATTAGAGTTGAAATGTTACCATTTCTATGTTTTGAG-TCAA 1552
Query 1553 TTGAC 1557
|||||
Sbjct 1553 TTGAC 1557
> Ahg925873 jgi|Araly1|925873|scaffold_201434.1
Length=640
Score = 414 bits (224), Expect = 8e-115
Identities = 268/289 (93%), Gaps = 3/289 (1%)
Strand=Plus/Plus
Query 1011 GCGGCTGGGGTAAAGAAGTTGTCTGACGATAAATCTGTGGTGTGTCACAAACAGAAGTAC 1070
||||| ||||| ||||||||||| ||||| || || |||||||||||||||||||||||
Sbjct 335 GCGGC-GGGGTCAAGAAGTTGTCGGACGACAAGTCGGTGGTGTGTCACAAACAGAAGTAT 393
Query 1071 CCATTCGCGGTGTTCTACTGCCACAAGGCGATGATGACGACCGTCTACGCGGTTCCGCTC 1130
|| |||||||||||||||||||| ||||| |||||||| | ||| ||||||||||| ||
Sbjct 394 CCGTTCGCGGTGTTCTACTGCCATAAGGCTATGATGACCAGCGTTTACGCGGTTCCACTA 453
Query 1131 GAGGGAGAGAACGGGATGCGAGCTAAAGCAGTTGCGGTATGCCACAAGAACACCTCAGCT 1190
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 454 GAAGGAGAGAACGGGATGCGAGCTAAAGCAGTTGCGGTGTGCCACAAGAACACCTCAGCT 513
Query 1191 TGGAACCCAAACCACTTGGCCTTCAAAGTC-TTAAAGGTGAAGCCAGGGACCGTTCCGGT 1249
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 514 TGGAACCCAAACCACTTGGCCTTCAAAGTCCTTAA-GGTGAAGCCAGGGACCGTTCCGGT 572
Query 1250 CTGCCACTTCCTCCCGGAGACTCATGTTGTGTGGTTCAGCTACTAGATA 1298
||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 573 CTGCCACTTCCTCCCGGAGACCCATGTTGTGTGGTTCACCTACTAGATA 621
Score = 108 bits (58), Expect = 2e-22
Identities = 92/108 (85%), Gaps = 4/108 (4%)
Strand=Plus/Plus
Query 607 AGACTCAGCTCCACGACGATCCTAACGCGGCTCTCTTCTTCTTGGAGAAGGACT-TGGTT 665
|||||||||||||||| ||||||||||||||||||||||||||||||||||| | || ||
Sbjct 233 AGACTCAGCTCCACGATGATCCTAACGCGGCTCTCTTCTTCTTGGAGAAGGA-TATGTTT 291
Query 666 CGCGGGAAA-GAAATGAATGTCCGGTTTAACGCTGAGGATGGTTACGG 712
| | ||||| | ||||| | |||||||| || ||||| |||| |||
Sbjct 292 C-CTGGAAAAGCTATGAACCTTCGGTTTAATGCAGAGGACGGTTGCGG 338
Score = 97.1 bits (52), Expect = 3e-19
Identities = 60/64 (94%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 96 TTTCTATTCCAACTCCCAAAAATGGCGATTCGTCTTCCTCTGATCTGTCTTCTTGGTTCA 155
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||
Sbjct 1 TTTCTATTCTAACTCCCAAAAATGGCGATTCGTCTTCCTTTGATCTGTCTTCTTGTTTCA 60
Query 156 TTCA 159
|||
Sbjct 61 GTCA 64
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58430435830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5