BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25620.2
Length=2111
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942140 jgi|Araly1|942140|scaffold_602684.1 2121 0.0
Ahg311505 jgi|Araly1|311505|fgenesh1_pm.C_scaffold_1000285 80.5 5e-14
Ahg494616 jgi|Araly1|494616|fgenesh2_kg.8__432__AT5G43890.1 75.0 2e-12
> Ahg942140 jgi|Araly1|942140|scaffold_602684.1
Length=1294
Score = 2121 bits (1148), Expect = 0.0
Identities = 1224/1261 (97%), Gaps = 4/1261 (0%)
Strand=Plus/Plus
Query 515 AAGAAGAAGTTATTTTCTTGATGGATTTCTGTTGGAAGAGAGAGATGGAAGGTAAACTAG 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGAAGAAGTTATTTTCTTGATGGATTTCTGTTGGAAGAGAGAGATGGAAGGTAAACTAG 60
Query 575 CACATGACCACCGCGGCATGACGTCACCGCGTCGTATCTGCGTCGTCACCGGTCCGGTGA 634
||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 61 CACATGACCACCGCGGCATGACGTCACCGCGTCGTATATGCGTCGTGACCGGTCCGGTGA 120
Query 635 TCGTAGGCGCCGGACCGTCGGGACTAGCCACGGCAGCATGTTTAAAAGAGAGAGGTATCA 694
|||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 TCGTAGGCTCCGGACCGTCGGGACTAGCCACGGCCGCATGTTTAAAAGAGAGAGGTATCA 180
Query 695 CGTCCGTACTACTAGAGAGATCAAACTGTATAGCATCACTATGGCAGCTCAAGACTTATG 754
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 CGTCCGTACTACTAGAGAGATCAAACTGTATAGCCTCACTATGGCAGCTCAAGACTTATG 240
Query 755 ACCGTCTTCATCTTCACCTTCCTAAACAATTCTGTGAACTTCCGATTATACCCTTCCCCG 814
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 241 ACCGTCTTCATCTTCACCTTCCTAAACAATTCTGTGAACTTCCGATTTTACCCTTCCCCG 300
Query 815 GAGATTTCCCTACCTACCCGACGAAGCAACAGTTCATCGAGTACCTTGAGGACTACGCTC 874
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 301 CCGATTTCCCTACCTACCCGACGAAGCAACAGTTCATCGAGTACCTTGAGGACTATGCTA 360
Query 875 GGAGGTTTGACATAAAGCCGGAGTTTAACCAAACGGTTGAGTCGGCTGCGTTTGATGAAA 934
||||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 361 GGAGGTTCGACATAAAGCCGGAGTTTAACCAGACGGTTGAGTCGGCTGAGTTTGATGAAA 420
Query 935 ACCTTGGGATGTGGCGCGTGACTAGCGTGGGAGAAGAAGGCACGACGGAGTATGTTTGTC 994
|||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| |
Sbjct 421 ACCTTGGGATGTGGCGCGTGACGAGCGTGGGAGAGGAAGGTACGACGGAGTATGTTTGCC 480
Query 995 GGTGGTTAGTGGCGGCGACGGGGGAGAATGCGGAGCCGGTGGTACCTAGGTTTGAGGGGA 1054
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 481 GGTGGTTAGTGGCGGCGACGGGGGAGAATGCGGAGCCGGTGGTGCCTAGGTTTGAGGGGA 540
Query 1055 TGGATAAGTTTGCAGCCGCCGGGGTAGTTAAGCACACGTGTCATTATAAAACCGGTGGAG 1114
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 541 TGGATAAGTTTGCAGCCGCCGGGGTAGTTAAGCACACATGTCATTATAAGACCGGTGGAG 600
Query 1115 ATTTCGCCGGA-AAAAGGGTTCTTGTCGTCGGATGTGGAAACTCCGGTATGGAGGTTTGT 1173
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 ATTTCGCCGGACAAAA-GGTTCTTGTCGTCGGATGTGGAAACTCCGGTATGGAGGTTTGT 659
Query 1174 TTGGATCTCTGCAACTTCGGTGCTCAGCCTTCTCTCGTTGTCAGAGACGCTGTGCACGTC 1233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTGGATCTCTGCAACTTCGGTGCTCAGCCTTCTCTCGTTGTCAGAGACGCTGTGCACGTC 719
Query 1234 CTACCACGAGAGATGTTGGGTACTTCAACTTTTGGGCTGTCCATGTTCTTACTGAAATGG 1293
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 720 CTACCACGAGAGATGTTGGGTACTTCAACTTTTGGGCTGTCCATGTTCTTACTCAAATGG 779
Query 1294 CTGCCCATCCGGCTTGTTGACCGTTTCCTTTTGGTTGTTTCCCGGTTCATCCTCGGGGAT 1353
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTGCCCATCCGGCTCGTTGACCGTTTCCTTTTGGTTGTTTCCCGGTTCATCCTCGGGGAT 839
Query 1354 ACTACCCTT-TTAGGTCTTAACAGGCCCCGGTTAGGTCCACTCGAGCTCAAAAATATCTC 1412
|| ||| || |||||||||||| ||||||||||||| ||||| |||||||||||||||||
Sbjct 840 ACCACC-TTGTTAGGTCTTAACCGGCCCCGGTTAGGCCCACTTGAGCTCAAAAATATCTC 898
Query 1413 CGGTAAAACTCCGGTTCTCGACGTTGGCACGCTAGCCAAAATCAAAACCGGAGACATTAA 1472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 CGGTAAAACTCCGGTTCTCGACGTTGGCACGCTAGCCAAAATCAAAACCGGAGACATTAA 958
Query 1473 GGTGTGTTCGGGGATAAGAAGGTTAAAACGACATGAAGTTGAGTTCGATAACGGAAAAAC 1532
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 GGTGTGTTCCGGGATAAGAAGGTTAAAACGACATGAAGTTGAGTTCGATAACGGAAAAAC 1018
Query 1533 AGAGAGATTTGACGCCATTATATTAGCAACTGGCTACAAAAGCAACGTACCCTCTTGGCT 1592
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1019 AGAGAGATTTGACGCCATTATATTGGCAACTGGCTACAAAAGCAACGTACCCTCTTGGCT 1078
Query 1593 AAAGGAGAATAAAATGTTTAGTAAGAAAGATGGATTTCCAATACAAGAGTTCCCTGAGGG 1652
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1079 AAAGGAGAATAAAATGTTTAGTAAGAAAGATGGATTTCCAATGCAAGAGTTCCCAGAGGG 1138
Query 1653 ATGGAGAGGGGAATGTGGGCTATACGCGGTCGGATTCACAAAACGTGGGATTAGTGGAGC 1712
||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 1139 ATGGAGAGGGGAATGTGGGCTATACGCGGTCGGATTCACGAAACGTGGGATTTCTGGAGC 1198
Query 1713 ATCAATGGATGCAAAGAGAATAGCTGAAGACATACACAAGTGTTGGAAACAAGACGAGCA 1772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 ATCAATGGATGCAAAGAGAATAGCTGAAGACATACACAAGTGTTGGAAACAAGACGAGCA 1258
Query 1773 A 1773
|
Sbjct 1259 A 1259
> Ahg311505 jgi|Araly1|311505|fgenesh1_pm.C_scaffold_1000285
Length=1266
Score = 80.5 bits (43), Expect = 5e-14
Identities = 416/590 (71%), Gaps = 50/590 (8%)
Strand=Plus/Plus
Query 619 GTCACCGGTCCGGTGATCGTAGGCGCCGGACCGTCGGGACTAGCCACGGCAGCATGTTTA 678
|||| ||||||||| |||||||| || || ||||| || |||| || || || ||| ||
Sbjct 64 GTCAACGGTCCGGTTATCGTAGGAGCTGGTCCGTCCGGTTTAGCTACAGCGGCTTGTCTA 123
Query 679 AAAGA-GAGAGGTA-TCACGTCCGTACTACTAGAGAGATCAAACTGTATAGCATCACTAT 736
|| | ||| | || | | ||| | | ||||||||| | || ||||| ||||| |
Sbjct 124 CGTGATCA-AGG-AGTCCCATTCGTTGTGGTCGAGAGATCAGATTGCATAGCTTCACTTT 181
Query 737 GGC-AGCTCAAGACTTATGACCGTCTTCATCTTCACCTT-CCTAA-ACAATTCTGTGAAC 793
||| | | | || || ||| | ||| | ||||| ||| || || | |||||||| ||
Sbjct 182 GGCAAAAACGA-ACCTACGACAGGCTTAAGCTTCA-CTTGCCCAAGA-AATTCTGTCAA- 237
Query 794 TT-CCGATTATACCCTTCCCCGGA-GATTTCCCT-ACCTACCCGACGAAGCAACAGTTCA 850
|| |||| || ||||| |||||| | | |||| | ||||| ||||| | ||||||||
Sbjct 238 TTGCCGACAATGCCCTT-CCCGGATCACTACCCTGA-ATACCCAACGAAACGACAGTTCA 295
Query 851 TCGAGTACCTTGAGGAC-TACGCTCGGAGGTTTGACA-TAAAGCCGGAGTTTAACCAAAC 908
|||| |||||||| | | ||||| |||| || | |||| ||||| || || |||
Sbjct 296 TCGATTACCTTGA-GTCATACGCAAACCGGTTCGAGATTAAA-CCGGAATTCAA-TAAAA 352
Query 909 G-GTTGAGTCGGCTGC-GTTTGATGAAAACC-TTGGGATGTGGCGCG-T-G-ACTAGCGT 962
| || ||||| ||| | |||||||| ||||| ||| | ||| | | | | || | | |
Sbjct 353 GCGTCGAGTCTGCT-CGGTTTGATG-AAACCAGCGGGCTATGGAGGGTTAGAAC-AACCT 409
Query 963 -GGGAGAAGAAGGCACGACGGAGTATGTTTGTCGGTGGTTAGTGGCGGCGACGGGGGAGA 1021
| | || ||| | || ||| ||| |||| |||||||| |||| ||||||||| || |
Sbjct 410 CAGCCGGAG-AGG-A-GATGGAATATATTTGCCGGTGGTTGGTGGTGGCGACGGGAGAAA 466
Query 1022 ATGCGGAGCCG-GTGGTACCTAG-GTTTGAGGGGATGGATAAGTTTGCAG-CCGCCGGGG 1078
| || || || || || || | | || | ||| | |||| | || | ||| |
Sbjct 467 ACGCCGA-ACGTGTTGT-CCCGGAGATTAATGGGCT---TAAG-ACGGAGTTTGACGGAG 520
Query 1079 TAGTTAA-GCACACGTGTCATTATAAAACCGGTGGAGATTTC-GCCGGAAAAAGGGTTCT 1136
|| ||| || | ||| | ||||| |||| | | | ||| | ||||| || |||||
Sbjct 521 AAG-TAATTCATGCATGTGAGTATAAGTCCGGCGAAAAATTCAG-AGGAAAGAGAGTTCT 578
Query 1137 TGTCGTCGGATGTGGAAACTCCGGTATGGAGGTTTGT-TTGGATCTCTGC 1185
|||||||||||||||||||||||| ||||| || | | ||| |||| |||
Sbjct 579 TGTCGTCGGATGTGGAAACTCCGGCATGGAAGTCTCTCTTG-ATCT-TGC 626
> Ahg494616 jgi|Araly1|494616|fgenesh2_kg.8__432__AT5G43890.1
Length=1278
Score = 75.0 bits (40), Expect = 2e-12
Identities = 58/66 (88%), Gaps = 3/66 (5%)
Strand=Plus/Plus
Query 1123 GGAAAAAGGGTTCTTGTCGTCGGATGTGGAAACTCCGGTATGGAGGTTTGT-TTGGATCT 1181
||||| || ||||||||||||||||||||||||||||| ||||| |||| | ||| ||||
Sbjct 577 GGAAAGAGTGTTCTTGTCGTCGGATGTGGAAACTCCGGCATGGAAGTTTCTCTTG-ATCT 635
Query 1182 CTGCAA 1187
|||||
Sbjct 636 -TGCAA 640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79418160825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5