BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G25640.1

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg894488 jgi|Araly1|894488|Al_scaffold_0006_2484                    479    5e-135


> Ahg894488 jgi|Araly1|894488|Al_scaffold_0006_2484
Length=312

 Score =  479 bits (259),  Expect = 5e-135
 Identities = 295/312 (95%), Gaps = 3/312 (1%)
 Strand=Plus/Plus

Query  1    ATGGGAATGGTTCTGTGGTTAACAGGAAAGATTGTTGAAGAAGAGAAAGGAAACTTTGGT  60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGGAATGGTTCTGTGGTTAACAGGAAAGATTGTTGAAGAAGAGAAAGGAAACTTTGGT  60

Query  61   TTGTGGTTGTCTTACTTGTTTACTGGTGTTGGAGCTAACATGGTTTCTTGGTTCACTTTA  120
            ||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct  61   TTGTGGTTGTCCTACTTGTTCACTGGTGTTGGAGCTAACCTGGTTTCTTGGTTCACTTTA  120

Query  121  CCGCCAAATTCAtttttttCTGGAGCCTCGGGAGCTGTTTTCGGGTTATTTGTGATCAGT  180
            ||||| |||||| ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CCGCCGAATTCAGTTTCTGCTGGAGCCTCGGGAGCTGTTTTCGGGTTATTTGTGATCAGT  180

Query  181  GTCCTTGTCAAGATGTCTCGGGGTTGGAGCAAATTTCTTGAAGTTCTTATATTGGGTCAG  240
            |||| |||||||||||||| ||||||||| |||||||||||| |||||||||||||||||
Sbjct  181  GTCCGTGTCAAGATGTCTCCGGGTTGGAGGAAATTTCTTGAATTTCTTATATTGGGTCAG  240

Query  241  TTTGTTATGAAGAGGT--T-CATTGATTCTCATAGGTATCTGAAGCAGTTCAGACTTCAA  297
            ||||||||||||||||  | |||||||||||| |||||| |||||||| |||||||||||
Sbjct  241  TTTGTTATGAAGAGGTGGTACATTGATTCTCACAGGTATTTGAAGCAGCTCAGACTTCAA  300

Query  298  CTGGATTATTAG  309
            ||||||||||||
Sbjct  301  CTGGATTATTAG  312



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10874342865


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5