BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G25750.1

Length=216
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942143 jgi|Araly1|942143|scaffold_602687.1                        206    7e-53


> Ahg942143 jgi|Araly1|942143|scaffold_602687.1
Length=439

 Score =  206 bits (111),  Expect = 7e-53
 Identities = 134/145 (92%), Gaps = 2/145 (1%)
 Strand=Plus/Minus

Query  66   AGGGGAGAGTTGGTTGGCGAAGAAGCTACACT-GCGGCGATGTAATGACGGTAATCTGGA  124
            ||| |||||||||||||||||||||||||| | ||  |||||||| ||||||||| ||||
Sbjct  151  AGGCGAGAGTTGGTTGGCGAAGAAGCTACA-TGGCAACGATGTAAAGACGGTAATTTGGA  93

Query  125  ACGAAGAGAAGAAGAATGTGGGAGGGAGAGATAGTGACGGTGAAGCTGAAGGTGAAGGTG  184
            || ||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||
Sbjct  92   ACTAAGAGAAGAAGAATGGGGGAGGGAGAGATAGTGACGATAAAGCTGAAGGTGAAGGTG  33

Query  185  AAGCTGAGACATTTGAGAACTCAAA  209
            |||||||||||||||||||||||||
Sbjct  32   AAGCTGAGACATTTGAGAACTCAAA  8



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7370334373


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5