BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25752.1
Length=1155
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489425 jgi|Araly1|489425|fgenesh2_kg.6__2559__AT5G25752.1 1506 0.0
Ahg894488 jgi|Araly1|894488|Al_scaffold_0006_2484 261 8e-69
> Ahg489425 jgi|Araly1|489425|fgenesh2_kg.6__2559__AT5G25752.1
Length=1026
Score = 1506 bits (815), Expect = 0.0
Identities = 935/992 (94%), Gaps = 12/992 (1%)
Strand=Plus/Plus
Query 61 ctctcaaatctcaatgtctcagcttcttcaccttcaccgtctctctcttccacaatcatc 120
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||
Sbjct 39 CTCTCAAATCTCAATGTCTCAGCTTCTTCACGTTCACCGTCTCTCTCTCCCACAATCGTC 98
Query 121 tctTCGTTTCAGATTCCCGCCTTTACATCGCCGACGTGCAGCTTCGTCGCCAACTAACTC 180
|||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||
Sbjct 99 TCTTCGTTTCAGATTCCCGCCTTTACATCGGCGCCGTGCAGCTTCGTCGCCGTCTAACTC 158
Query 181 AACTCAAcccccccTGCAGTTTCGTCCTCTCACAGTCTCTAGATCTCAAATAACTTGCAG 240
|||| || || || | ||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 159 AACTGAA-TCCACC-G-TGTTTCGTTCTCTCACAGTCTCCAGATCTCAAATAACTTGCAG 215
Query 241 ATTCAGCCAATCCGATATTACGCCACAATTTGAATTGGATAAAGCAAAAGACAATCGAAA 300
|||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 216 ATTCAGCCAATCAGATATTACGCCACAATTTGAATTGGATAAAGCACAAGACAATCGAAA 275
Query 301 ACCACAAAAGCGAGCAAATGGCATATTTTGGATCATACTTATCAATCTGGGCATATATCT 360
||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 276 ACCACAAAAGCGAGCGAATGGCATATTTTGGATCATACTTATCAATCTTGGCATATATGT 335
Query 361 TGCTGATCACTTCTTTCAGGTTCGTGGGATCAAATCTTTGTATTTGTATCACAATTTTCC 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 336 TGCTGATCACTTCTTTCAGGTTCGCGGGATCAAATCTTTGTATTTGTATCACAATTTTCC 395
Query 421 GGCATGGTATCAGTTTGTGACGGCTACATTCTGTCATGCTAACTGGAACCATCTCTCCAG 480
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 396 GGCATGGTACCAGTTTGTGACTGCTACATTCTGTCATGCTAACTGGAACCATCTCTCCAG 455
Query 481 CAATCtttttttCTTGTACATATTTGGAAAGCTTGTTGAAGAAGAAGAAGGAAACTTTGG 540
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 456 CAATCTTTTTTTCTTGTACATCTTTGGAAAGCTTGTTGAAGAAGAAGAAGGAAACTTTGG 515
Query 541 TTTGTGGCTCTCCTACTTGTTCACTGGTGTTGGAGCTAACCTTGTTTCTTGGTTAGTTTT 600
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 516 TTTGTGGCTCTCTTACTTGTTCACTGGTGTTGGAGCTAACCTGGTTTCTTGGTTAGTTTT 575
Query 601 ACCGAGAAATGCTGTTTCTGTTGGTGCCTCGGGAGCTGTTTTTGGGTTATTTGCTATCAG 660
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 576 ACCGAGAAATGCTGTTTCTGTTGGAGCCTCGGGAGCTGTTTTTGGGTTATTTGCAATCAG 635
Query 661 TGTCCTCGTCAAGATGTCTTGGGATTGGAGGAAAATCCTTGAAGTTCTTATATTGGGTCA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 TGTCCTCGTCAAGATGTCTTGGGATTGGAGGAAAATCCTTGAAGTTCTTATATTGGGTCA 695
Query 721 GTTCGTTATTGAGAGGGTAATGGAAGCAGCTCAGGCGTCGGCTGGATTATCAGGAACTAT 780
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 696 GTTCGTTGTTGAGAGGGTAATGGAAGCAGCTCAGGCATCGGCTGGATTATCAGGAACTAT 755
Query 781 ATATGGTGGATACTCTTTACAAACTGTTAATCACATTGCGCATCTCTCTGGTGCTCTTGT 840
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 756 ATATGGTGGCTACTCTTTACAAACTGTTAATCACATTGCTCATCTCTCTGGTGCTCTTGT 815
Query 841 TGGGGTTGTTTTAGTTTGGCTTCTCAGCAAATTTCCTTCGGCATCTATGGATCAAGACGT 900
||| ||||||||||||||||||||||||||||| ||||||| |||| |||||||||| ||
Sbjct 816 TGGTGTTGTTTTAGTTTGGCTTCTCAGCAAATTCCCTTCGGAATCTGTGGATCAAGAAGT 875
Query 901 TAAAAAGTCCTCGTAAAAATGACGAGACAA-----A-A-C-TTTTCGTGTAAGGAACATA 952
|||||||||| || |||| ||| ||||||| | | | ||||| |||||||||||||
Sbjct 876 TAAAAAGTCCCCGCAAAAGTGAGGAGACAATCGGGATAACCTTTTCTTGTAAGGAACATA 935
Query 953 CTAGCTGTCCAGTGAATGCAAGGTAGATGAAACGATTGATAGATTGACAAAATATCCTTG 1012
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 936 CTAGCTGTCCAGTGAATGCAAGGCAGATGAAACAATTGATAGATTGACAAAATATCCTTG 995
Query 1013 TaaaaaaaCTGAAGAACGGTCTCTAAACCGAG 1044
|||||| ||||||||||| |||||| |||||
Sbjct 996 TAAAAAT-CTGAAGAACGGGCTCTAATCCGAG 1026
> Ahg894488 jgi|Araly1|894488|Al_scaffold_0006_2484
Length=312
Score = 261 bits (141), Expect = 8e-69
Identities = 208/238 (87%), Gaps = 14/238 (6%)
Strand=Plus/Plus
Query 506 GGAAAGCTTGTTGAAGAAGAAG-AAGGAAACTTTGGTTTGTGGCTCTCCTACTTGTTCAC 564
|||||| |||||||||||| || |||||||||||||||||||| | ||||||||||||||
Sbjct 25 GGAAAGATTGTTGAAGAAG-AGAAAGGAAACTTTGGTTTGTGGTTGTCCTACTTGTTCAC 83
Query 565 TGGTGTTGGAGCTAACCTTGTTTCTTGGTT-AGTTTTACCGA-GAAATGCTGTTTCTGTT 622
|||||||||||||||||| ||||||||||| | ||| |||| ||| | | ||||||| |
Sbjct 84 TGGTGTTGGAGCTAACCTGGTTTCTTGGTTCACTTT-ACCGCCGAATT-CAGTTTCTGCT 141
Query 623 GGTGCCTCGGGAGCTGTTTTTGGGTTATTTGCT-ATCAGTGTCC-TCGTCAAGATGTCTT 680
|| ||||||||||||||||| |||||||||| | |||||||||| | ||||||||||||
Sbjct 142 GGAGCCTCGGGAGCTGTTTTCGGGTTATTTG-TGATCAGTGTCCGT-GTCAAGATGTCTC 199
Query 681 -GGGATTGGAGGAAAATCCTTGAAGTTCTTATATTGGGTCAGTTCGTTATTGA-GAGG 736
||| |||||||||| | |||||| ||||||||||||||||||| ||||| || ||||
Sbjct 200 CGGG-TTGGAGGAAATTTCTTGAATTTCTTATATTGGGTCAGTTTGTTAT-GAAGAGG 255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43078896210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5