BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25760.1
Length=745
Score E
Sequences producing significant alignments: (Bits) Value
Ahg931130 jgi|Araly1|931130|scaffold_303587.1 719 0.0
Ahg894497 jgi|Araly1|894497|Al_scaffold_0006_2493 699 0.0
Ahg942150 jgi|Araly1|942150|scaffold_602694.1 643 0.0
> Ahg931130 jgi|Araly1|931130|scaffold_303587.1
Length=514
Score = 719 bits (389), Expect = 0.0
Identities = 461/496 (93%), Gaps = 3/496 (1%)
Strand=Plus/Plus
Query 81 TTTGGGA-AATT--AGAGATGCAGGCATCAAGAGCGCGACTGTTTAAAGAATACAAAGAG 137
||| ||| |||| |||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 3 TTTTGGACAATTAGAGAGATGCAGGCATCAAGAGCGAGACTCTTTAAAGAATACAAAGAG 62
Query 138 GTACAGCGAGAGAAAGTAGCAGATCCTGATATTCAATTGATCTGTGACGATACCAACATA 197
|| ||||||||||||||||| ||||| |||||||||||| | ||||||||||||||||||
Sbjct 63 GTTCAGCGAGAGAAAGTAGCTGATCCAGATATTCAATTGGTGTGTGACGATACCAACATA 122
Query 198 TTCAAATGGACCGCTCTTATCAAAGGACCTTCGGAGACTCCTTACGAAGGCGGTGTTTTT 257
||||||||||||||||||||||| ||||| || ||||||||||| |||||||||||||||
Sbjct 123 TTCAAATGGACCGCTCTTATCAAGGGACCGTCAGAGACTCCTTATGAAGGCGGTGTTTTT 182
Query 258 CAGCTTGCTTTTTCTGTTCCTGAACCTTATCCTTTGCAACCTCCTCAAGTTCGATTCTTG 317
|||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 183 CAGCTTGCTTTTGCTGTTCCTGAACCATATCCTTTGCAACCTCCTCAAGTACGATTCTTG 242
Query 318 ACCAAGATATTCCATCCTAATGTTCATTTCAAGACAGGAGAAATATGTCTCGACATTTTG 377
||||| ||||| ||||| ||||| |||||||||||||| |||||||| |||||||| |||
Sbjct 243 ACCAAAATATTTCATCCAAATGTGCATTTCAAGACAGGGGAAATATGCCTCGACATATTG 302
Query 378 AAGAATGCTTGGAGTCCTGCTTGGACGCTTCAGTCTGTGTGTAGAGCTATCATAGCATTG 437
|||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 303 AAGAATGCGTGGAGTCCCGCTTGGACGCTTCAGTCCGTGTGTAGAGCTATCATAGCATTG 362
Query 438 ATGGCTCATCCTGAGCCGGACAGTCCTCTTAACTGCGACTCAGGGAATCTTCTAAGATCT 497
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 363 ATGGCTCATCCTGAGCCGGACAGTCCTCTTAACTGCGACTCAGGTAATCTTCTAAGATCT 422
Query 498 GGTGATGTGAGAGGGTTCAATTCAATGGCACAAATGTATACACGCCTCGCCGCTATGCCT 557
|| |||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 423 GGGGATGTGAGAGGGTTCAATTCAATGGCACGCATGTACACACGCCTCGCCGCAATGCCA 482
Query 558 AAGAAAGgatgatgat 573
||||||||||||||||
Sbjct 483 AAGAAAGGATGATGAT 498
> Ahg894497 jgi|Araly1|894497|Al_scaffold_0006_2493
Length=474
Score = 699 bits (378), Expect = 0.0
Identities = 442/474 (93%), Gaps = 0/474 (0%)
Strand=Plus/Plus
Query 96 ATGCAGGCATCAAGAGCGCGACTGTTTAAAGAATACAAAGAGGTACAGCGAGAGAAAGTA 155
|||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||
Sbjct 1 ATGCAGGCATCAAGAGCGAGACTCTTTAAAGAATACAAAGAGGTTCAGCGAGAGAAAGTA 60
Query 156 GCAGATCCTGATATTCAATTGATCTGTGACGATACCAACATATTCAAATGGACCGCTCTT 215
|| ||||| |||||||||||| | ||||| ||||||||||||||||||||||||||||||
Sbjct 61 GCTGATCCAGATATTCAATTGGTGTGTGATGATACCAACATATTCAAATGGACCGCTCTT 120
Query 216 ATCAAAGGACCTTCGGAGACTCCTTACGAAGGCGGTGTTTTTCAGCTTGCTTTTTCTGTT 275
||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 121 ATCAAGGGACCGTCGGAGACTCCTTATGAAGGCGGTGTTTTTCAGCTTGCTTTTGCTGTT 180
Query 276 CCTGAACCTTATCCTTTGCAACCTCCTCAAGTTCGATTCTTGACCAAGATATTCCATCCT 335
|||||||| ||||||||||||||||||||||| |||||||||||||| ||||| |||||
Sbjct 181 CCTGAACCATATCCTTTGCAACCTCCTCAAGTGCGATTCTTGACCAAAATATTTCATCCA 240
Query 336 AATGTTCATTTCAAGACAGGAGAAATATGTCTCGACATTTTGAAGAATGCTTGGAGTCCT 395
||||| |||||||||||||| ||||| || |||||||| ||||||||||| ||||||||
Sbjct 241 AATGTGCATTTCAAGACAGGGGAAATTTGCCTCGACATATTGAAGAATGCGTGGAGTCCC 300
Query 396 GCTTGGACGCTTCAGTCTGTGTGTAGAGCTATCATAGCATTGATGGCTCATCCTGAGCCG 455
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTTGGACGCTTCAGTCCGTGTGTAGAGCTATCATAGCATTGATGGCTCATCCTGAGCCG 360
Query 456 GACAGTCCTCTTAACTGCGACTCAGGGAATCTTCTAAGATCTGGTGATGTGAGAGGGTTC 515
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 361 GACAGTCCTCTTAACTGCGACTCAGGGAATCTTCTAAGATCTGGGGATGTGAGAGGGTTC 420
Query 516 AATTCAATGGCACAAATGTATACACGCCTCGCCGCTATGCCTAAGAAAGgatga 569
||||||||||||| ||||| || ||||||||||| ||||| ||||||||||||
Sbjct 421 AATTCAATGGCACGCATGTACACGCGCCTCGCCGCAATGCCAAAGAAAGGATGA 474
> Ahg942150 jgi|Araly1|942150|scaffold_602694.1
Length=480
Score = 643 bits (348), Expect = 0.0
Identities = 408/438 (93%), Gaps = 0/438 (0%)
Strand=Plus/Plus
Query 136 AGGTACAGCGAGAGAAAGTAGCAGATCCTGATATTCAATTGATCTGTGACGATACCAACA 195
|||| || |||||||||||||| ||||| |||||||||||| | ||||||||||||||||
Sbjct 27 AGGTTCATCGAGAGAAAGTAGCTGATCCAGATATTCAATTGGTGTGTGACGATACCAACA 86
Query 196 TATTCAAATGGACCGCTCTTATCAAAGGACCTTCGGAGACTCCTTACGAAGGCGGTGTTT 255
||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct 87 TATTCAAATGGACCGCTCTTATCAAGGGACCGTCGGAGACTCCTTATGAAGGCGGTGTTT 146
Query 256 TTCAGCTTGCTTTTTCTGTTCCTGAACCTTATCCTTTGCAACCTCCTCAAGTTCGATTCT 315
|||||||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 147 TTCAGCTTGCTTTTGCTGTTCCTGAACCATATCCTTTGCAACCTCCTCAAGTGCGATTCT 206
Query 316 TGACCAAGATATTCCATCCTAATGTTCATTTCAAGACAGGAGAAATATGTCTCGACATTT 375
||||||| ||||| ||||| ||||| |||||||||||||| ||||| || |||||||| |
Sbjct 207 TGACCAAAATATTTCATCCAAATGTGCATTTCAAGACAGGGGAAATTTGCCTCGACATAT 266
Query 376 TGAAGAATGCTTGGAGTCCTGCTTGGACGCTTCAGTCTGTGTGTAGAGCTATCATAGCAT 435
|||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct 267 TGAAGAATGCGTGGAGTCCCGCTTGGACGCTTCAGTCCGTGTGTAGAGCTATCATAGCAT 326
Query 436 TGATGGCTCATCCTGAGCCGGACAGTCCTCTTAACTGCGACTCAGGGAATCTTCTAAGAT 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 TGATGGCTCATCCTGAGCCGGACAGTCCTCTTAACTGCGACTCAGGGAATCTTCTAAGAT 386
Query 496 CTGGTGATGTGAGAGGGTTCAATTCAATGGCACAAATGTATACACGCCTCGCCGCTATGC 555
|||| |||||||||||||||||||||||||||| ||||| || ||||||||||| ||||
Sbjct 387 CTGGGGATGTGAGAGGGTTCAATTCAATGGCACGCATGTACACGCGCCTCGCCGCAATGC 446
Query 556 CTAAGAAAGgatgatgat 573
| ||||||||||||||||
Sbjct 447 CAAAGAAAGGATGATGAT 464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27448500240
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5