BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25770.3
Length=1597
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894498 jgi|Araly1|894498|Al_scaffold_0006_2494 1696 0.0
Ahg942151 jgi|Araly1|942151|scaffold_602695.1 462 3e-129
> Ahg894498 jgi|Araly1|894498|Al_scaffold_0006_2494
Length=1209
Score = 1696 bits (918), Expect = 0.0
Identities = 1025/1078 (95%), Gaps = 2/1078 (0%)
Strand=Plus/Plus
Query 421 TATGGAATCGCCGATTACTCAACCCCAAATGTTTAGATTGCAGTTTCTTCGTCTTCTTCA 480
|||||||||||||||||||||| ||||||||||||||| | ||||||||||||| |||||
Sbjct 123 TATGGAATCGCCGATTACTCAAGCCCAAATGTTTAGATCGGAGTTTCTTCGTCTGCTTCA 182
Query 481 TAGTCGACGATCACCCCAAGTTCCATTAATAGCCGATTCTTCAAATCCTATCGAGAATCC 540
||||||||||||||| ||||||||||||||||| |||||||||||||| |||| || ||
Sbjct 183 GAGTCGACGATCACCCAAAGTTCCATTAATAGCCAATTCTTCAAATCCTGTCGAAAACCC 242
Query 541 TCTCTTTCAAGCTGATGTTCCTTCTACCACAGCAATAGAGTCTTGTCCAAAAGAAAACAT 600
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 243 TCTCTTTCAAGCTGATGTTCCTTCTACAAAAGCAATAGAGTCTTGTCCAAAAGAAAACAT 302
Query 601 TGGTAAGTTAAAAGATATGCTTAAAGAAGAAAACATTCATTTGCACACTGAGGATTCAGA 660
|||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 303 TGGTAACTTAAAAGAAATGCTTAAAGAAGAAAACCTTCATTTGCACACTGAGGATTCAGA 362
Query 661 GCAAGGGAAATTACCTTTGCTTATTTTAAGCTTGAAAGAGAGAAGTGAAGAAAAAAGGCC 720
|||||||||||||||||| ||||||||||||||||||||||| | | |||||| ||||||
Sbjct 363 GCAAGGGAAATTACCTTTACTTATTTTAAGCTTGAAAGAGAGGACTAAAGAAAGAAGGCC 422
Query 721 AGCGATTGTGTTTATGCATGGCACAAACACAAACAAAGAATGGTTAAGGCCATGGCTTGA 780
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 423 AGCGATTGTGTTTATGCATGGCACAAACACAAACAAAGAATGGTTAAGACCATGGCTTGA 482
Query 781 AGCATATGCTTCGCGGGGATATGTAGCCATCGGTTTAGACTCTCGTTACCACGGTGAACG 840
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 483 AGCATATGCTTCGCGGGGATATGTAGCCATCGGTTTAGACTCTCGGTACCACGGTGAACG 542
Query 841 TGCTGATTGCAAAACTGCATATCGAGATGCTCTTATATCATCTTGGAGAAATGGAAACAC 900
||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 543 TGCTGATTGCACAACTGCCTATCGAGATGCTCTTATATCATCTTGGAGAAATGGAAACAC 602
Query 901 TATGCCTTTTATCTTTGATACTGTATGGGATTTGATCAAACTAGCTGAATATCTTACTCA 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 603 AATGCCTTTTATCTTTGATACTGTATGGGATTTGATCAAACTAGCTGAATATCTTACTCA 662
Query 961 GAGGGATGATATAGACCCGAAAAAGATAGGAATCACCGGTATTTCGCTAGGAGGGATGCA 1020
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 663 GAGGGATGATATAGACCCGAAAAGGATAGGAATCACCGGTATTTCGCTAGGAGGGATGCA 722
Query 1021 TGCTTGGTTTGCTGCTGCAGCTGACACTCGCTATTCCGTGGTTGTCCCATTAATCGGTGT 1080
|||||||||||||||||||||||| || ||||||||||||| |||||| || ||||||||
Sbjct 723 TGCTTGGTTTGCTGCTGCAGCTGATACCCGCTATTCCGTGGCTGTCCCTTTGATCGGTGT 782
Query 1081 TCAGGGTTTTAGATGGGCAATAGAGAATGATGAGTGGGAAGCAAGAGTCAACAGTATCAA 1140
||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 783 CCAGGGATTTAGATGGGCAATAGACAATGATGAGTGGGAAGCAAGAGTCAACAGTATAAA 842
Query 1141 ACCTTTATTTGAAGAAGCAAGGATTGATCTCGGAAAGAACATAATCGACAAAGAACTAGT 1200
|||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||
Sbjct 843 ACCTTTATTTGAAGAAGCAAGGATCGATCTCGGAAAGAATGTAATCGACAAAGAACTGGT 902
Query 1201 CGAGAAGGTGTGGAACAGAATAGCTCCTGGCCTAGCTTCGAAGTTTGATTCACCGTACTC 1260
||||||||||||||||||||||||||||||||||||||| ||||| ||||| || |||||
Sbjct 903 CGAGAAGGTGTGGAACAGAATAGCTCCTGGCCTAGCTTCTAAGTTCGATTCGCCTTACTC 962
Query 1261 ATTACCAGTGATTGCTCCACGGCCTCTTTACATCCTTAACGGCGCAAATGATCCTCGATG 1320
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 963 ATTACCAGTGATTGCTCCGCGGCCTCTTTACATCCTTAATGGCGCAAATGATCCTCGATG 1022
Query 1321 TCCTCTTGGCGGACTAGAACTTGCGTTAAAGAGAGCTGA-AAAGGCGTATAAGGAAACAG 1379
||||||||||||||||||| || |||||||||||||||| |||| ||||||||||||| |
Sbjct 1023 TCCTCTTGGCGGACTAGAAGTTCCGTTAAAGAGAGCTGAGAAAG-CGTATAAGGAAACTG 1081
Query 1380 CTTCTCCTGGAAACTTCAAGTTCAAAGCAGAAGATGGAGTTGGACACGAAGCGACGAGTT 1439
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 1082 CTTCTCCTGGAAACTTCAAGTTCAAAGCAGAAGATGGAGTTGGGCACGAAGTGACGAGTT 1141
Query 1440 TCATGATCAAAGAATCATCAGACTGGTTTGACAAATTCCTTAAACAAGAAGATATGAC 1497
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1142 TCATGATCAAAGAATCATCAGACTGGTTTGACAAATTCCTTAAAGAAGAAGATATGAC 1199
> Ahg942151 jgi|Araly1|942151|scaffold_602695.1
Length=409
Score = 462 bits (250), Expect = 3e-129
Identities = 278/292 (95%), Gaps = 0/292 (0%)
Strand=Plus/Plus
Query 1206 AGGTGTGGAACAGAATAGCTCCTGGCCTAGCTTCGAAGTTTGATTCACCGTACTCATTAC 1265
|||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||
Sbjct 88 AGGTGTGGAACAGAATAGCTCCTGGCCTAGCTTCTAAGTTTGATTCGCCTTACTCATTAC 147
Query 1266 CAGTGATTGCTCCACGGCCTCTTTACATCCTTAACGGCGCAAATGATCCTCGATGTCCTC 1325
||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 148 CAGTGATTGCTCCGCGGCCTCTTTACATCCTTAACGGAGCAAAAGATCCTCGATGTCCTC 207
Query 1326 TTGGCGGACTAGAACTTGCGTTAAAGAGAGCTGAAAAGGCGTATAAGGAAACAGCTTCTC 1385
|||||||||||||| || |||||||||||||||| ||||||||||||||||| |||||||
Sbjct 208 TTGGCGGACTAGAAGTTCCGTTAAAGAGAGCTGAGAAGGCGTATAAGGAAACTGCTTCTC 267
Query 1386 CTGGAAACTTCAAGTTCAAAGCAGAAGATGGAGTTGGACACGAAGCGACGAGTTTCATGA 1445
||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 268 CTGAAAACTTCAAGTTCAAAGCAGAAGATGGAGTTGGGCACGAAGTGACGAGTTTCATGA 327
Query 1446 TCAAAGAATCATCAGACTGGTTTGACAAATTCCTTAAACAAGAAGATATGAC 1497
|||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 328 TCAAAGAATCATCAGACTGGTTTGACAAATTCCTTAAAGAAGAAGATATGAC 379
Score = 104 bits (56), Expect = 2e-21
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 1012 AGGGATGCATGCTTGGTTTGCTGCTGCAGCTGACACTCGCTATTCCGTGGTTGTCCCATT 1071
||||||||||||||||||||||||||||||| | || |||||||| |||| |||||| ||
Sbjct 17 AGGGATGCATGCTTGGTTTGCTGCTGCAGCTAATACCCGCTATTCTGTGGCTGTCCCTTT 76
Query 1072 AATCGGTGTTCAGG 1085
||||||||||||||
Sbjct 77 AATCGGTGTTCAGG 90
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59839774895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5