BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25840.1
Length=775
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942164 jgi|Araly1|942164|scaffold_602708.1 894 0.0
> Ahg942164 jgi|Araly1|942164|scaffold_602708.1
Length=564
Score = 894 bits (484), Expect = 0.0
Identities = 536/562 (95%), Gaps = 0/562 (0%)
Strand=Plus/Plus
Query 49 AAAGACCACATATCCTTCCAATGGCCCCCCTTCAACGCACCATCTCGGATATTTCACACC 108
||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1 AAAGATCACATATCCTTCCAATGGCCCCCCTTCAACGCACAATCTCTGATATTTCACACC 60
Query 109 AAATTTCAATAGACAACACTCTAACAAAAGAACCATCTCCAACCGCAACCGCAACAACTT 168
|||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 AAATATCCATAGACAACACTCTAACAAAAGAACCATCTCCAACCGGAACCGCAACAACTT 120
Query 169 TGTTATCCTTATCAGCGATATCCGAAGTGGAAGATGCAAAGTGTGAGTGTTGTGGCATGT 228
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TGTTGTCCTTATCAACGATATCCGAAGTGGAAGATGCAAAGTGTGAGTGTTGTGGCATGT 180
Query 229 CTGAAGAGTGCACGCCGGAGTACATACACCGTGTGCGTTCAAAATTCTCAGGGAAGCTGA 288
|||||||||||||||||||||||||||||||||| ||||||||||| | ||||||| |||
Sbjct 181 CTGAAGAGTGCACGCCGGAGTACATACACCGTGTACGTTCAAAATTTTTAGGGAAGTTGA 240
Query 289 TTTGCGGGCTGTGCGAAAAAGCGGTGGAGGGGGAGATGGAGAAGATGAACAACAGTGAAG 348
||||||||||||| ||||| || ||||||| ||||||||||||||||| ||||||||| |
Sbjct 241 TTTGCGGGCTGTGTGAAAAGGCAGTGGAGGAGGAGATGGAGAAGATGATCAACAGTGATG 300
Query 349 TGCTGATGGAGAAGCGGCGAGAAGAGGCAGTGAAGGTACACATGAGCGCATGTTCCCGGT 408
|| || | |||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 301 TGGTGGTAGAGAAGCGGCGAGAAGAGGCAGTGAAGGCACATATGAGCGCATGTTCCCGGT 360
Query 409 TCAACAGGCTAGGCCGGAGTTATCCAGTGTTGTACCAAGCAGAAGCGGTTAAGGAAATGC 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCAACAGGCTAGGCCGGAGTTATCCAGTGTTGTACCAAGCAGAAGCGGTTAAGGAAATGC 420
Query 469 TGAAAAAGAGGTCTAAGAAGATGGTTGGAGCCACCAAGCCTGAAAAAGGTGGCCTCGCTA 528
|||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 421 TGAAGAAGAGATCTAAGAAGATGGTTGGAGCCACCAAGCCGGAAAAAGGTGGCCTCGCTA 480
Query 529 GGAGCTCTAGCTGCATGCCGGCTTTAGCTAAGGAGCTTAAAGATCGTACCTTGGTTAATT 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GGAGCTCTAGCTGCATGCCGGCTTTAGCTAAGGAGCTTAAAGATCGTACCTTGGTTAATT 540
Query 589 AGCTTATTTGTATACTCACGTA 610
||||||||||||||||||||||
Sbjct 541 AGCTTATTTGTATACTCACGTA 562
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28592187750
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5