BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25850.1
Length=1446
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942165 jgi|Araly1|942165|scaffold_602709.1 551 5e-156
> Ahg942165 jgi|Araly1|942165|scaffold_602709.1
Length=799
Score = 551 bits (298), Expect = 5e-156
Identities = 344/367 (94%), Gaps = 0/367 (0%)
Strand=Plus/Plus
Query 482 CTTTACCGTGTCTGAAAATCATGCATCTAAACTATGTTTGGTTTCCCAATGATGCCACTT 541
||||||| |||||||||||||||||||||||||||||| ||||||| |||| ||||||||
Sbjct 1 CTTTACCTTGTCTGAAAATCATGCATCTAAACTATGTTCGGTTTCCTAATGTTGCCACTT 60
Query 542 TCGAGAGACTTGTCTCTTCTTGCCCTGTCTTAGAAGACTTAAAGATTGATGTATTATGGA 601
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTGAGAGACTTGTCGCTTCTTGCCCTGTCTTAGAAGACTTAAAGATTGATGTATTATGGA 120
Query 602 ATGATGGAAGAGTTTATCGAGTGAAATCTCGTTCACTTAAGAGACTCCGTTTACTACGAA 661
||||||||||||| ||||| ||| ||||||||||||| ||||||||||||||||||||||
Sbjct 121 ATGATGGAAGAGTCTATCGGGTGCAATCTCGTTCACTGAAGAGACTCCGTTTACTACGAA 180
Query 662 GTTCTACTATGGTGTTTGATTCTGTTCCGGGTGTTGTTATTGATGCTCCTCTAATATGCT 721
||||| | ||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 181 GTTCTTCGATGGTGTTTGATTCTGTTCCGGGAGTTGTTATTGATGCTCCTCTACTATGCT 240
Query 722 ATTTGAGAATCAATGATCGTGTATCAGAAACCTATATATTAAATGATCTGGAGTCCAATG 781
|||||||||||| |||| |||||||||||||||||||| ||||| |||||||||||||||
Sbjct 241 ATTTGAGAATCAGTGATAGTGTATCAGAAACCTATATAGTAAATAATCTGGAGTCCAATG 300
Query 782 CCAAGTTAGATATACATCTAGACTTTGGTTCTGAAGATTTTGGCGAACCAAGCGTTTCAT 841
||||||||||||| ||||| |||||||||||||| |||||||||||| ||||||||||||
Sbjct 301 CCAAGTTAGATATTCATCTCGACTTTGGTTCTGAGGATTTTGGCGAAACAAGCGTTTCAT 360
Query 842 CGAGGAG 848
||||||
Sbjct 361 GGAGGAG 367
Score = 431 bits (233), Expect = 7e-120
Identities = 321/363 (88%), Gaps = 8/363 (2%)
Strand=Plus/Plus
Query 1084 AAGATGGGTTCTGAGGAGATGAATCAAATAAGTTTCCTTCTCCGGATGAAGAGGATTGTG 1143
||||||||||||||||||||||||||||||||||| || ||| |||||| |||||| |||
Sbjct 423 AAGATGGGTTCTGAGGAGATGAATCAAATAAGTTTTCTGCTCGGGATGACGAGGATCGTG 482
Query 1144 GATATGACGATATTCATGTACACTTCCAAGGTATTGTTGCATAGTGATAACATAAATCAA 1203
||||||||||||||||||||||||||||||||||| ||| |||||| || |||||||||
Sbjct 483 GATATGACGATATTCATGTACACTTCCAAGGTATTTTTGGGTAGTGAGAAGATAAATCAA 542
Query 1204 CTAAGTTTTTCATCTGTT---CCTAAGTGTCTACTATCATCGCTCCAGTTTGTTGAACTC 1260
|||||||||||||||||| ||||||||||| ||||| |||||||||||||||||| |
Sbjct 543 CTAAGTTTTTCATCTGTTAATCCTAAGTGTCTGCTATCGTCGCTCCAGTTTGTTGAATTG 602
Query 1261 AATGCCCAAATCTTGAGATTTGATGGCGAAATACTGAATCTGGCGAAATACTTCTTAGAG 1320
||||||||||| || ||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 603 GATGCCCAAATCATGGGATTTGATGATGAACTACTGAATCTGGCGAAATACTTCTTAGAG 662
Query 1321 AATTCATCTATCCTCCAAAAACTCACTCTACATCCGAA-CAAGTATGGTTCAACTTATGC 1379
||||||||||||||||||||| ||||| |||||| ||| || | |||||||||| ||||
Sbjct 663 AATTCATCTATCCTCCAAAAAATCACTGTACATC-GAAACAGGCATGGTTCAACATATGA 721
Query 1380 GAA-TATGCTACACAAATTCCGAAGACGCTCTAGAACTTGCCAATTCATCCTAA-CTGAT 1437
| | || || |||||||||||||||||||||| | ||||||| ||||||| | |||||
Sbjct 722 GGGGT-TGATAAACAAATTCCGAAGACGCTCTAGGATTTGCCAAGTCATCCTCATCTGAT 780
Query 1438 TTG 1440
|||
Sbjct 781 TTG 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54088147900
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5