BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25880.1
Length=1884
Score E
Sequences producing significant alignments: (Bits) Value
Ahg488005 jgi|Araly1|488005|fgenesh2_kg.6__1139__AT5G11670.1 1958 0.0
Ahg489440 jgi|Araly1|489440|fgenesh2_kg.6__2574__AT5G25880.1 1533 0.0
> Ahg488005 jgi|Araly1|488005|fgenesh2_kg.6__1139__AT5G11670.1
Length=2037
Score = 1958 bits (1060), Expect = 0.0
Identities = 1518/1741 (87%), Gaps = 24/1741 (1%)
Strand=Plus/Plus
Query 41 CCGGTAACAGTTCCGGTGTAGGTGGGGGAATCTCTGATGTATACGGTGAAGATAGTGCCA 100
||| |||||| ||||| || ||||| || || ||||| || |||||||| ||| ||||
Sbjct 231 CCGATAACAGATCCGGCGTTGGTGGTGGTATTTCTGACGTCTACGGTGAGGATTCCGCCA 290
Query 101 CGTTGGATCAACTTGTCACTCCTTGGGTTACCTCTGTCGCAAGTGGGTA-TACATTGATG 159
| ||||| || |||||||| |||||||||||||| ||||| ||||| || | | ||||||
Sbjct 291 CCTTGGACCAGCTTGTCACCCCTTGGGTTACCTCCGTCGCTAGTGGCTACT-CGTTGATG 349
Query 160 CGTGATCCACGTTACAATAAAGGACTTGCTTTTACTGATAAAGAGAGAGATGCTCATTAC 219
|||||||| |||||||| || |||||||| |||||||||||||| |||||||||||||||
Sbjct 350 CGTGATCCGCGTTACAACAAGGGACTTGCATTTACTGATAAAGAAAGAGATGCTCATTAC 409
Query 220 ATAACTGGTCTTCTTCCTCCTGTAGTTTT-ATCTCAAGATGTTCAGGAGAGGAAAG-TGA 277
|||||||||||||||||||||| ||||| | ||| ||||||||||||| ||||| |||
Sbjct 410 TTAACTGGTCTTCTTCCTCCTGTGGTTTTGA-GTCAGGATGTTCAGGAGA-GAAAGCTGA 467
Query 278 TGCATAATCTTCGTCAGTATACGGTTCCTTTGCAACGTTACATGGCTCTCATGGATCTTC 337
|||| ||||| |||||||| || |||||| | || ||||||||||| || ||||||||||
Sbjct 468 TGCACAATCTCCGTCAGTACACTGTTCCTCTACAGCGTTACATGGCCCTGATGGATCTTC 527
Query 338 AGGAAAGGAATGAGAGATTGTTTTATAAGCTTTTGATTGATAATGTGGAGGAGTTGCTTC 397
|||||||||| ||||| ||||| || ||||||||||||||||| || |||||||||||||
Sbjct 528 AGGAAAGGAACGAGAGGTTGTTCTACAAGCTTTTGATTGATAACGTTGAGGAGTTGCTTC 587
Query 398 CGGTTGTGTATACACCGACGGTTGGTGAGGCTTGCCAAAAGTATGGGAGCATTTATAGGA 457
| |||||||| ||||| || ||||||||||||||||| |||||||| |||||||| ||||
Sbjct 588 CAGTTGTGTACACACCAACAGTTGGTGAGGCTTGCCAGAAGTATGGAAGCATTTACAGGA 647
Query 458 GGCCACAAGGTCTTTACATCAGCTTGAAAGAGAAGGGAAAGATTCTTGAAGTATTGAAGA 517
|||||| ||||| |||||||| |||||||| ||||| |||||||||||||| |||||||
Sbjct 648 AGCCACAGGGTCTCTACATCAGTTTGAAAGAAAAGGGCAAGATTCTTGAAGTGTTGAAGA 707
Query 518 ATTGGCCACAGAGAGGGATTCAAGTTATTGTTGTTACCGATGGTGAGCGGATTCTCGGTC 577
| ||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 708 ACTGGCCCCAGAGAGGGATCCAAGTTATCGTTGTTACAGATGGTGAGCGGATTCTCGGTC 767
Query 578 TTGGAGATCTTGGTTGCCAGGGAATGGGAATCCCTGTTGGGAAGCTTTCTCTTTACACAG 637
| ||||||||||||||||||||||||||||| || || ||||| |||||||||||||| |
Sbjct 768 TGGGAGATCTTGGTTGCCAGGGAATGGGAATTCCAGTGGGGAAACTTTCTCTTTACACCG 827
Query 638 CTTTGGGAGGAATCCGTCCATCGGCTTGCCTTCCAATAACCATTGATGTGGGTACAAACA 697
|||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||
Sbjct 828 CTTTGGGAGGAATCCGTCCATCAGCTTGTCTTCCAATCACCATTGATGTGGGTACAAACA 887
Query 698 ATGAGAAGCTGTTGAATAATGAGTTTTACATTGGCCTTAAACA--GAAGAGGGCAAATGG 755
|||||||| || | ||| |||| || ||||||||||||||||| ||||| |||| |||
Sbjct 888 ATGAGAAGTTGCTAAATGATGAATTCTACATTGGCCTTAAACAGCGAAGA--GCAACTGG 945
Query 756 CGAGGAATATGCAGAGTTTTTGCAGGAGTTTATGTGTGCTGTTAAACAAAACTATGGAGA 815
| |||||||||| ||||| | || ||||| |||||||||||||| || |||||||||||
Sbjct 946 CCAGGAATATGCTGAGTTCCTCCACGAGTTCATGTGTGCTGTTAAGCAGAACTATGGAGA 1005
Query 816 GAAAGTGTTGGTGCAGTTTGAAGATTTTGCAAACCACCATGCGTTTGAGCT-TCTCTCTA 874
|||||||||||| |||||||||||||||||||||||| |||| ||||| || | | ||||
Sbjct 1006 GAAAGTGTTGGTACAGTTTGAAGATTTTGCAAACCACAATGCCTTTGACCTAT-TGTCTA 1064
Query 875 AGTACTGCTCA-AGTCATCTCGTTTTCAATGATGATATCCAAGGAACTGCATCTGTGGTG 933
||||| || | || ||||| ||||||||||| |||||||| || |||||||| ||||||
Sbjct 1065 AGTACAGC-GATAGCCATCTTGTTTTCAATGACGATATCCAGGGTACTGCATCCGTGGTG 1123
Query 934 CTTGCCGGGCTTATTGCGGCTCAGAAAGTACTTGGT-AAAAGCCTAGCTGACCATACCTT 992
||||| ||||||||||| |||||||| || |||||| ||||| || ||||||||||||||
Sbjct 1124 CTTGCTGGGCTTATTGCCGCTCAGAAGGTGCTTGGTAAAAAG-CTGGCTGACCATACCTT 1182
Query 993 TTTGTTCTTGGGTGCTGGAGAGGCTGGAACCGGAATCGCTGAGCTAATTGCTCTTAAAAT 1052
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1183 CCTGTTCTTGGGTGCCGGAGAGGCTGGAACCGGTATCGCTGAGCTAATTGCTCTTAAGAT 1242
Query 1053 TTCGAAAGAGACTGGAAAACCAATCGATGAGACCCGGAAGAAGATTTGGCTTGTGGACTC 1112
|||||||||||||||| || |||| |||||||||||||||||||||||||||||||||
Sbjct 1243 TTCGAAAGAGACTGGAGCTCCCATCGCTGAGACCCGGAAGAAGATTTGGCTTGTGGACTC 1302
Query 1113 CAAGGGACTGATTGTTAGCGAACGCAAAGAATCGCTTCAACATTTCAAGCAGCCATGGGC 1172
|||||||||||| |||||| ||||||||||| ||||| || |||||||||||||||||
Sbjct 1303 CAAGGGACTGATCGTTAGCTCGCGCAAAGAATCTCTTCAGCACTTCAAGCAGCCATGGGC 1362
Query 1173 GCATGACCAC-AAGCCTGTCAAGGAGCTC-TTGGCAGCTGTTAATGCAATCAAGCCAACT 1230
|||||| || || ||||| ||||| ||| |||| |||||||||||||||||||||||
Sbjct 1363 GCATGAGCATGAA-CCTGTGAAGGACCTCATTGGT-GCTGTTAATGCAATCAAGCCAACC 1420
Query 1231 GTTCTTATTGGAACCTCTGGTGTGGGTAAGACTTTCACAAAGGAAGTAGTGGAGGCCATG 1290
|||||||||||||| || ||||||||| ||||||||||||| ||||| || |||||||||
Sbjct 1421 GTTCTTATTGGAACATCCGGTGTGGGTCAGACTTTCACAAAAGAAGTTGTCGAGGCCATG 1480
Query 1291 GCTACCTTGAACGAGAAACCATTGATTCTTGCACTCTCAAACCCAACTTCTCAAGCCGAG 1350
|||||| ||||||||||| ||||||||||| ||||||||||| ||||||||||| |||
Sbjct 1481 GCTACCAACAACGAGAAACCGTTGATTCTTGCTCTCTCAAACCCTACTTCTCAAGCTGAG 1540
Query 1351 TGCACGGCGGAAGAAG-CTTACACATGGACCAAGGGTCGTGCAATCTTTGCAAGTGGAAG 1409
|| || || || | || ||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1541 TGTACCGCAGA-GCAGGCTTACACATGGACCAAGGGTCGTGCGATCTTTGGAAGTGGAAG 1599
Query 1410 CCCGTTTGACCCTGTTCAGTATGATGGCAAAAAATTCACGCCTGGCCAGGCAAACAACTG 1469
||||||||| |||||| |||| |||||||||| | | |||||||||||||||||||||
Sbjct 1600 CCCGTTTGATCCTGTTGAGTACGATGGCAAAACCTACTTGCCTGGCCAGGCAAACAACTG 1659
Query 1470 TTACATTTTCCCTGGTCTCGGTCTTGGTTTGATCATGTCCGGTGCCATTCGTGTCCGTGA 1529
|||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1660 TTACATTTTCCCGGGTCTGGGTCTTGGTTTGATCATGTCCGGTGCAATTCGTGTCCGTGA 1719
Query 1530 TGACATGCTTCTAGCAGCTTCGGAAGCGCTGGCCTCCCAAGTGACGGAAGAGAATTTTGC 1589
||||||||| || |||||||| ||||| ||||| | ||||| || |||||| |||| ||
Sbjct 1720 TGACATGCTCCTCGCAGCTTCTGAAGCATTGGCCGCACAAGTCACAGAAGAGCATTTCGC 1779
Query 1590 GAACGGACTGATCTATCCGCCTTT-TGCAAACATCAGAAAGATCTCTGCTAACATTGCAG 1648
|| || |||||||| ||||| || | |||| |||||| |||||||||||||||||||||
Sbjct 1780 CAATGGTCTGATCTACCCGCCATTCT-CAAATATCAGAGAGATCTCTGCTAACATTGCAG 1838
Query 1649 CCAGTGTGGGAGCCAAAACCTACGAACTCGGACTGGCATCGAATCTGCCTCGTCCTAAGG 1708
|| |||| | ||||||||||| || |||||| |||| ||||| ||||| ||| | ||||
Sbjct 1839 CCTGTGTCGCCGCCAAAACCTATGACCTCGGATTGGCGTCGAACCTGCCACGTGCAAAGG 1898
Query 1709 ACCTCGTAAAGATGGCAGAGAGCTGCATGTACAGTCCTGTCTACAGAAACTTCCGTTAAA 1768
| || || ||| | ||||||||| |||||||||| ||||| |||||||||| ||||||||
Sbjct 1899 ATCTTGTGAAGTTTGCAGAGAGCAGCATGTACAGCCCTGTGTACAGAAACTACCGTTAAA 1958
Query 1769 A 1769
|
Sbjct 1959 A 1959
> Ahg489440 jgi|Araly1|489440|fgenesh2_kg.6__2574__AT5G25880.1
Length=1327
Score = 1533 bits (830), Expect = 0.0
Identities = 973/1039 (94%), Gaps = 22/1039 (2%)
Strand=Plus/Plus
Query 827 TGCAGTTTGAAGATTTTGCAAACCACCATGCGTTTGAGCTTCTCTCTAAGTACTGCTCAA 886
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 278 TGCAGTTTGAAGATTTTGCAAACCACCATGCGTTTGAGCTTCTCTCTAAGTACTGCTCCA 337
Query 887 GTCATCTCGTTTTCAATGATGATATCCAAGGAACTGCATCTGTGGTGCTTGCCGGGCTTA 946
|||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||
Sbjct 338 GTCATCTCGTTTTCAATGATGATATCCAAGTAACTGCATCAGTGGTTCTTGCCGGGCTTA 397
Query 947 TTGCGGCTCAGAAAGTACTTGGTAAAAGCCTAGCTGACCATACCTTTTTGTTCTTGGGTG 1006
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 398 TTGCGGCTCAGAAAGTACTTGGTAAAAGCCTAGCTGACCATACTTTTTTGTTCTTGGGGG 457
Query 1007 CTGGAGAGGCTGGAACCGGAATCGCTGAGCTAATTGCTCTTAAAATTTCGAAAGAGACTG 1066
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 CTGGAGAGGCTGGAACCGGAATCGCTGAGCTAATTGCTCTTAAAATTTCGAAAGAGACTG 517
Query 1067 GAAAACCAATCGATGAGACCCGGAAGAAGATTTGGCTTGTGGACTCCAAGGGACTGATTG 1126
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 518 GAAAACCAATCGCTGAGACCCGGAAGAAGATTTGGCTTGTGGACTCCAAGGGACTGATCG 577
Query 1127 TTAGCGAACGCAAAGAATCGCTTCAACATTTCAAGCAGCCATGGGCGCATGACCACAAGC 1186
||||| ||||||||||| ||||| |||||||||||||||||||||||||| |||||||
Sbjct 578 TTAGCTCGCGCAAAGAATCTCTTCAGCATTTCAAGCAGCCATGGGCGCATGAGCACAAGC 637
Query 1187 CTGTCAAGGAGCTCTTGGCAGCTGTTAATGCAATCAAGCCAACTGTTCTTATTGGAACCT 1246
| |||||||| ||||||| |||||||||||||||||||||||| |||||||||||||| |
Sbjct 638 CCGTCAAGGACCTCTTGGGAGCTGTTAATGCAATCAAGCCAACCGTTCTTATTGGAACAT 697
Query 1247 CTGGTGTGGGTAAGACTTTCACAAAGGAAGTAGTGGAGGCCATGGCTACCTTGAACGAGA 1306
| |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 698 CCGGTGTGGGTAAGACATTCACTAAGGAAGTAGTGGAGGCCATGGCCACCTTGAACGAGA 757
Query 1307 AACCATTGATTCTTGCACTCTCAAACCCAACTTCTCAAGCCGAGTGCACGGCGGAAGAAG 1366
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 758 AACCATTGATTCTTGCTCTCTCAAACCCAACTTCTCAAGCCGAGTGCACAGCGGAAGAAG 817
Query 1367 CTTACACATGGACCAAGGGTCGTGCAATCTTTGCAAGTGGAAGCCCGTTTGACCCTGTTC 1426
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 CTTACACATGGACCAAGGGTCGTGCAATCTTTGCAAGTGGAAGCCCGTTTGACCCTGTTG 877
Query 1427 AGTATGATGGCAAAAAATTCACGCCTGGCCAGGCAAACAACTGTTACATTTTCCCTGGTC 1486
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||
Sbjct 878 AGTATGATGGCAAAAAATTCATGCCTGGCCAGGCAAACAACTGCTACATTTTCCCGGGTC 937
Query 1487 TCGGTCTTGGTTTGATCATGTCCGGTGCCATTCGTGTCCGTGATGACATGCTTCTAGCAG 1546
||||||||||||||||||||||||||||||| ||||| || |||||||||||||| ||||
Sbjct 938 TCGGTCTTGGTTTGATCATGTCCGGTGCCATACGTGTTCGCGATGACATGCTTCTCGCAG 997
Query 1547 C-T-T-CGGAAGCGCTGGCCTCCCAAGTGACGGAAGAGAATTTTGCGAACGGACTGATCT 1603
| | | |||||||||||||||||||||||| ||||||||||| || |||||| ||||||
Sbjct 998 CTTGTAAGGAAGCGCTGGCCTCCCAAGTGACAGAAGAGAATTTCGCTAACGGATTGATCT 1057
Query 1604 ATCCGCCTTTTGCAAACATCAGAAAGATCTCTGCTAACATTGCAGCCAGTGTGGGAGCCA 1663
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1058 ATCCGCCTTTTGCAAACATCAGAAAGATCTCAGCTAACATTGCAGCCAGTGTGGGAGCCA 1117
Query 1664 AAACCTACGAACTCGGACTGGCATCGAATCTGCCTCGTCCTAAGGACCTCGTAAAGATGG 1723
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1118 AAACCTACGAACTAGGACTGGCATCGAATCTGCCTCGTCCTAAGGACCTCGTAAAGATGG 1177
Query 1724 CAGAGAGCTGCATGTACAGTCCTGTCTACAGAAACTTCCGTTAAAACATTctttttaaca 1783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 CAGAGAGCTGCATGTACAGTCCTGTCTACAGAAACTTCCGTTAAAACATTCTTTTT---- 1233
Query 1784 tttttggctcagctttttactttttgcttttcagttttggtgctttCTATATACGACAAC 1843
||| | |||||| |||||||||||||||||||||||||||| || |||
Sbjct 1234 TTT-------A-CTTTTT-------GCTTTTCAGTTTTGGTGCTTTCTATATAGGATAAC 1278
Query 1844 TTCTAAACTATTTATACTT 1862
||||| ||||||| |||||
Sbjct 1279 TTCTACACTATTTTTACTT 1297
Score = 431 bits (233), Expect = 1e-119
Identities = 267/283 (94%), Gaps = 4/283 (1%)
Strand=Plus/Plus
Query 1 ATGGGCACCAATCAGACTCAGATCTCCGATGAATATGT-TACCGGTAAC-AGTTCCGGTG 58
||||||||| |||| |||||||||||||| |||||||| | |||||||| || |||||||
Sbjct 1 ATGGGCACCGATCAAACTCAGATCTCCGACGAATATGTCT-CCGGTAACAAG-TCCGGTG 58
Query 59 TAGGTGGGGGAATCTCTGATGTATACGGTGAAGATAGTGCCACGTTGGATCAACTTGTCA 118
| ||||| |||||||| ||||| |||||||||||||||||||| |||||||||| ||||
Sbjct 59 TCGGTGGTGGAATCTCCGATGTTTACGGTGAAGATAGTGCCACACTGGATCAACTCGTCA 118
Query 119 CTCCTTGGGTTACCTCTGTCGCAAGTGGGTATACATTGATGCGTGATCCACGTTACAATA 178
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 119 CTCCTTGGGTTACCTCTGTCGCAAGTGGGTATACATTGATGCGTGATCCTCGTTACAATA 178
Query 179 AAGGACTTGCTTTTACTGATAAAGAGAGAGATGCTCATTACATAACTGGTCTTCTTCCTC 238
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AAGGACTTGCATTTACTGATAAAGAGAGAGATGCTCATTACATAACTGGTCTTCTTCCTC 238
Query 239 CTGTAGTTTTATCTCAAGATGTTCAGGAGAGGAAAGTGATGCA 281
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CTGTAGTTTTATCTCAAGATGTTCAGGAGAGGAAAGTGATGCA 281
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70771675210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5