BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G25890.1

Length=873
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg894515 jgi|Araly1|894515|Al_scaffold_0006_2511                    623    7e-178


> Ahg894515 jgi|Araly1|894515|Al_scaffold_0006_2511
Length=444

 Score =  623 bits (337),  Expect = 7e-178
 Identities = 381/402 (95%), Gaps = 4/402 (1%)
 Strand=Plus/Plus

Query  194  GGTTGAGGTAGCTCCAGTGGTGGGATGGCCGCCGGTGAGATCATCCCGGAGAAACCTAAC  253
            ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct  45   GGTTGAGGTAGCTCCAGTGGTGGGATGGCCGCCGGTGAGATCATCCCGGCGGAACCTAAC  104

Query  254  GGCACAACTAAAGGAGGAGATGAAGAAGAAG-GAGAGTGATGAAGAGAAGGAATTGTACG  312
            ||| || ||||||||||||||||||||| || ||||||||||||||||| || |||||||
Sbjct  105  GGCGCAGCTAAAGGAGGAGATGAAGAAG-AGAGAGAGTGATGAAGAGAAAGAGTTGTACG  163

Query  313  TTAAGATCAACATGGAAGGAGTTC-CAATAGGAAGAAAAGTCAACCTTTCAGCTTATAAC  371
            |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct  164  TTAAGATCAACATGGAAGGAGTTCTC-ATAGGAAGAAAAGTCAACCTTTCAGCTTATAAC  222

Query  372  AACTACCAACAGCTTTCACATGCCGTTGACCAACTCTTCTCTAAGAAAGATTCGTGGGAT  431
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  223  AACTACCAACAGCTTTCACATGCCGTTGACCAACTCTTTTCTAAGAAAGATTCGTGGGAT  282

Query  432  CTAAACAGACAATACACTTTGGTCTACGAAGACACTGAAGGAGATAAAGTTCTGGTCGGG  491
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  283  CTAAACAGACAATACACTTTGGTCTACGAAGACACTGAAGGAGATAAAGTTCTGGTCGGA  342

Query  492  GATGTTCCTTGGGAGATGTTTGTATCTACTGTAAAGAGGTTGCATGTTTTAAAGACCTCC  551
            |||||||||||||||||||||||||| || || |||||||| || |||||||| ||||||
Sbjct  343  GATGTTCCTTGGGAGATGTTTGTATCGACCGTGAAGAGGTTACACGTTTTAAAAACCTCC  402

Query  552  CACGCCTTCTCACTCTCACCTAGAAAACATGGCAAGGAATAG  593
             |||||||||| |||||||||| |||||||||||||||||||
Sbjct  403  AACGCCTTCTCGCTCTCACCTAAAAAACATGGCAAGGAATAG  444



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32328233616


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5