BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25900.1
Length=1713
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942169 jgi|Araly1|942169|scaffold_602713.1 2206 0.0
Ahg942172 jgi|Araly1|942172|scaffold_602716.1 392 4e-108
Ahg894517 jgi|Araly1|894517|Al_scaffold_0006_2513 226 4e-58
> Ahg942169 jgi|Araly1|942169|scaffold_602713.1
Length=1466
Score = 2206 bits (1194), Expect = 0.0
Identities = 1380/1471 (94%), Gaps = 7/1471 (0%)
Strand=Plus/Plus
Query 137 CTCTCCTTCTCCAGAAAGAACATGTCTGAAGTCTCCACTCTCCCCTCTGTTCCAGTGGTA 196
||||||||| ||| |||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1 CTCTCCTTCACCAAAAAGAACATGTCTGAAGTTTCTTCTCTCCCCTCTGTTCCAGTGGTA 60
Query 197 CCAGGGTTTCCTGTTATTGGGAACTTGCTGCAACTAAAAGAGAAGAAACCTCACAAGACT 256
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 CCAGGGTTTCCGGTTATTGGGAATTTGCTGCAACTAAAAGAGAAGAAACCTCACAAGACT 120
Query 257 TTCACTAGATGGTCAGAGATTTATGGTCCTATTTACTCTATAAAGATGGGTTCTTCTTCT 316
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 121 TTCACTAGATGGTCAGAGATTTATGGTCCTATTTACTCTATAAAGATGGGTTCTTCCTCT 180
Query 317 CTTATTGTCCTCAATTCTACTGAGACTGCCAAAGAGGCCATGGTGACGCGGTTTTCGTCT 376
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 181 CTTATTGTCCTCAATTCAACTGAAACCGCCAAAGAGGCCATGGTGACGCGGTTTTCGTCT 240
Query 377 ATCTCAACGAGGAAGTTGTCAAATGCGTTGACAGTCCTTACTTGTGACAAATCTATGGTT 436
||||| ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 241 ATCTCGACGAGAAAGTTGTCGAATGCGTTGACAGTCCTTACTTGCAACAAATCTATGGTT 300
Query 437 GCTACTAGTGATTATGATGATTTCCACAAGTTGGTGAAACGGTGTCTCTTGAACGGTCTT 496
||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||
Sbjct 301 GCTACTAGTGATTATGATGATTTCCACAAGTTGGTGAAACGGTGTATCTTGAATGGCCTT 360
Query 497 TTGGGTGCTAATGCACAGAAACGAAAAAGACATTACAGAGATGCACTCATTGAAAATGTG 556
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 361 TTGGGTGCTAATGCACAGAAACGAAAAAGACATTACAGAGATGCCCTCATTGAGAATGTG 420
Query 557 TCTTCCAAGTTGCATGCCCATGCTAGGGACCATCCACAAGAACCTGTAAACTTCAGAGCT 616
|||||||||||||||||||| || ||||| ||||| |||||||||||||||||||| |||
Sbjct 421 TCTTCCAAGTTGCATGCCCACGCGAGGGATCATCCGCAAGAACCTGTAAACTTCAGGGCT 480
Query 617 ATATTTGAGCATGAGCTTTTCGGTGTAGCATTGAAGCAAGCTTTTGGGAAAGATGTGGAA 676
||||| |||||||||||||| || || |||||||||||||| |||||||||||||| ||
Sbjct 481 ATATTCGAGCATGAGCTTTTTGGAGTTGCATTGAAGCAAGCGTTTGGGAAAGATGTAGAG 540
Query 677 TCCATTTATGTTAAAGAACTCGGTGTGACTTTGTCGAAAGACGAGATCTTCAAGGTTTTA 736
|||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 541 TCCATTTATGTTAAGGAACTCGGTGTTACTTTGTCGAAAGATGAGATCTTCAAGGTTTTA 600
Query 737 GTACATGACATGATGGAAGGTGCAATTGATGTTGATTGGAGAGACTTCTTCCCATACTTG 796
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 GTACATGACATGATGGAGGGTGCAATTGATGTTGATTGGAGAGACTTCTTCCCATACTTG 660
Query 797 AAATGGATTCCAAATAAAAGTTTTGAAGCAAGAATCCAGCAAAAGCATAAACGTAGACTC 856
||||||||||| ||||||||||||||| |||| |||||| |||||||||||||||| ||
Sbjct 661 AAATGGATTCCGAATAAAAGTTTTGAATCAAGGATCCAGGAAAAGCATAAACGTAGGCTT 720
Query 857 GCAGTGATGAATGCTCTGATTCAAGATCGACTGAAGCAGAATGGTTCAGAATCGGATGAT 916
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 721 GCGGTGATGAATGCTCTGATTCAAGATCGACTGAAGCAGAATGATTCAGAATCGGATGAT 780
Query 917 GATTGCTATCTCAACTTCTTGATGTCGGAAGCGAAAACACTAACCAA-GGAGCAAATTGC 975
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 781 GATTGCTATCTCAACTTCTTGATGTCGGAAGCGAAAACACTAAC-AATGGAGCAAATTGC 839
Query 976 TATCTTGGTTTGGGAGACGATTATCGAGACAGCTGACACTACTTTGGTTACAACTGAATG 1035
|| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 840 AATATTGGTTTGGGAGACGATTATCGAGACAGCTGACACTACTTTGGTCACAACTGAATG 899
Query 1036 GGCCATCTATGAGCTCGCTAAGCATCCAAGTGTCCAAGATCGTCTGTGCAAAGAAATCCA 1095
|||||| ||||| ||||| |||||||||||||| |||||||||||||| |||||||||||
Sbjct 900 GGCCATGTATGAACTCGCAAAGCATCCAAGTGTTCAAGATCGTCTGTGTAAAGAAATCCA 959
Query 1096 AAATGTCTGCGGAGGAGAAAAGT-TCAAAGAAGAGCAATTGTCTCAAGTTCCTTATCTCA 1154
|||| ||||||| ||||||| | ||||||||||||||||| ||||||||||||||||||
Sbjct 960 AAATATCTGCGGTGGAGAAAC-TATCAAAGAAGAGCAATTGCCTCAAGTTCCTTATCTCA 1018
Query 1155 ATGGAGTCTTTCATGAAACGCTTAGGAAATACAGTCCTGCTCCTCTAGTTCCCATTCGCT 1214
|||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1019 ATGGAGTCTTCCACGAAACGCTTAGAAAATACAGTCCTGCTCCTCTAGTTCCCATTCGCT 1078
Query 1215 ACGCCCACGAGGATACGCAAATCGGAGGCTATCATGTCCCTGCAGGAAGTGAGATTGCAA 1274
| |||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 1079 ATGCCCACGAGGATACACAAATCGGAGGCTATCTTGTCCCTGCAGGAAGTGAGATAGCAA 1138
Query 1275 TAAACATATATGGATGCAACATGGATAAGAAGCGTTGGGAGAGACCAGAGGACTGGTGGC 1334
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1139 TAAACATCTATGGATGCAACATGGATAAGAAGCGTTGGGAGAGACCAGAGGAGTGGTGGC 1198
Query 1335 CGGAGCGGTTTCTTGATGATGGCAAATATGAAACGTCAGATCTTCACAAGACAATGGCGT 1394
|||| ||||| || ||||| ||||| ||| |||| ||||||||||||||||||||||
Sbjct 1199 CGGAACGGTTCCTGGATGAA---AAATACGAATCGTCGGATCTTCACAAGACAATGGCGT 1255
Query 1395 TTGGAGCGGGAAAGAGGGTTTGTGCTGGTGCTCTTCAAGCATCTCTCATGGCAGGCATTG 1454
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1256 TTGGAGCGGGAAAGAGGGTTTGTGCTGGTGCACTTCAAGCATCTCTCATGGCAGGCATTG 1315
Query 1455 CTATTGGAAGATTAGTGCAAGAATTCGAGTGGAAGCTTAGAGATGGCGAAGAAGAGAATG 1514
| ||||| |||||||| |||||||| || |||||||||||||| ||||||||||||||||
Sbjct 1316 CCATTGGGAGATTAGTTCAAGAATTTGAATGGAAGCTTAGAGACGGCGAAGAAGAGAATG 1375
Query 1515 TGGATACATATGGCTTGACCTCTCAGAAGCTTTATCCTCTTATGGCTATTATCAATCCAA 1574
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1376 TGGATACATATGGCTTGACCTCTCAAAAGCTTTATCCTCTCATGGCTATTATCAATCCAA 1435
Query 1575 GGCGTTCTTAAGACAGAAATCTCTTCTTTCT 1605
|||||||||||||| |||||||||||||||
Sbjct 1436 GGCGTTCTTAAGACCCAAATCTCTTCTTTCT 1466
> Ahg942172 jgi|Araly1|942172|scaffold_602716.1
Length=374
Score = 392 bits (212), Expect = 4e-108
Identities = 247/264 (94%), Gaps = 1/264 (0%)
Strand=Plus/Plus
Query 1263 GTGAGATTGCAATAAACATATATGGATGCAACATGGATAAGAAGCGTTGGGAGAGACCAG 1322
||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 62 GTG-GATAGCAATAAACATCTATGGATGCAACATGGATAAGAAGCGTTGGGAGAGACCAG 120
Query 1323 AGGACTGGTGGCCGGAGCGGTTTCTTGATGATGGCAAATATGAAACGTCAGATCTTCACA 1382
||||||||||||| ||||||||||||||| || ||||||| ||| |||||||||||||||
Sbjct 121 AGGACTGGTGGCCAGAGCGGTTTCTTGATAATAGCAAATACGAATCGTCAGATCTTCACA 180
Query 1383 AGACAATGGCGTTTGGAGCGGGAAAGAGGGTTTGTGCTGGTGCTCTTCAAGCATCTCTCA 1442
|||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 181 AGACAATGGCCTTCGGAGCGGGAAAGAGGGTTTGTGCTGGTGCACTTCAAGCATCTCTCA 240
Query 1443 TGGCAGGCATTGCTATTGGAAGATTAGTGCAAGAATTCGAGTGGAAGCTTAGAGATGGCG 1502
||||||||||||| |||||||| ||||| |||||||| || |||||||||||||| ||||
Sbjct 241 TGGCAGGCATTGCCATTGGAAGGTTAGTTCAAGAATTTGAATGGAAGCTTAGAGACGGCG 300
Query 1503 AAGAAGAGAATGTGGATACATATG 1526
||||||||||||||||||||||||
Sbjct 301 AAGAAGAGAATGTGGATACATATG 324
> Ahg894517 jgi|Araly1|894517|Al_scaffold_0006_2513
Length=180
Score = 226 bits (122), Expect = 4e-58
Identities = 145/156 (93%), Gaps = 1/156 (1%)
Strand=Plus/Plus
Query 1271 GCAATAAACATATATGGATGCAACATGGATAAGAAGCGTTGGGAGAGACCAGAGGACTGG 1330
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 4 GCAATAAACATCTATGGATGCAACATGGATAAGAAGCGTTGGGAGAGACCAGAGGAGTGG 63
Query 1331 TGGCCGGAGCGGTTTCTTGATGATGGCAAATATGAAACGTCAGATCTTCACAAGACAATG 1390
||||| ||||||||||||||| || ||||||| ||| |||| ||||||||||||||||||
Sbjct 64 TGGCCAGAGCGGTTTCTTGATAATAGCAAATACGAATCGTCGGATCTTCACAAGACAATG 123
Query 1391 GCGTTTGGAGCGGGAAAGAGGGTTTGTGCTGGTGCT 1426
||||| ||||||||||| |||||| |||||||||||
Sbjct 124 GCGTTCGGAGCGGGAAAAAGGGTT-GTGCTGGTGCT 158
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64258243315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5