BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G25920.1

Length=1793
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg894848 jgi|Araly1|894848|Al_scaffold_0006_2844                    147    4e-34


> Ahg894848 jgi|Araly1|894848|Al_scaffold_0006_2844
Length=519

 Score =  147 bits (79),  Expect = 4e-34
 Identities = 135/162 (83%), Gaps = 4/162 (2%)
 Strand=Plus/Plus

Query  549  TGGGATCCTGGAGAAATCTTATGTGAACAACTTCAACTAGGCTGGATAGATCATTACTTT  608
            |||||||||||||||||||||||||||| | ||||| | || ||| ||||||||||||||
Sbjct  85   TGGGATCCTGGAGAAATCTTATGTGAACTAGTTCAATTGGGGTGGTTAGATCATTACTTT  144

Query  609  GGTGAGAATAAGGAACCGAAACTACTGCCAAG-AATGT-TGGAAATCGAAACTCTGGAAA  666
            |||||||||||| ||| ||| ||  ||||||| ||| | || |||| | || | |||| |
Sbjct  145  GGTGAGAATAAGAAACAGAAGCTGTTGCCAAGGAAT-TATG-AAATAGTAATTTTGGAGA  202

Query  667  TCACTATCAAAGGTAAGGTAGTTGGGGTTATCTCTCTGGAGC  708
            ||||||||| || ||||||| |||| ||| | || |||||||
Sbjct  203  TCACTATCATAGCTAAGGTAATTGGAGTTTTATCCCTGGAGC  244



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 67305462915


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5