BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G25920.1 Length=1793 Score E Sequences producing significant alignments: (Bits) Value Ahg894848 jgi|Araly1|894848|Al_scaffold_0006_2844 147 4e-34 > Ahg894848 jgi|Araly1|894848|Al_scaffold_0006_2844 Length=519 Score = 147 bits (79), Expect = 4e-34 Identities = 135/162 (83%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 549 TGGGATCCTGGAGAAATCTTATGTGAACAACTTCAACTAGGCTGGATAGATCATTACTTT 608 |||||||||||||||||||||||||||| | ||||| | || ||| |||||||||||||| Sbjct 85 TGGGATCCTGGAGAAATCTTATGTGAACTAGTTCAATTGGGGTGGTTAGATCATTACTTT 144 Query 609 GGTGAGAATAAGGAACCGAAACTACTGCCAAG-AATGT-TGGAAATCGAAACTCTGGAAA 666 |||||||||||| ||| ||| || ||||||| ||| | || |||| | || | |||| | Sbjct 145 GGTGAGAATAAGAAACAGAAGCTGTTGCCAAGGAAT-TATG-AAATAGTAATTTTGGAGA 202 Query 667 TCACTATCAAAGGTAAGGTAGTTGGGGTTATCTCTCTGGAGC 708 ||||||||| || ||||||| |||| ||| | || ||||||| Sbjct 203 TCACTATCATAGCTAAGGTAATTGGAGTTTTATCCCTGGAGC 244 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67305462915 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5