BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25930.1
Length=3269
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489442 jgi|Araly1|489442|fgenesh2_kg.6__2576__AT5G25930.1 4795 0.0
Ahg894518 jgi|Araly1|894518|Al_scaffold_0006_2514 1173 0.0
> Ahg489442 jgi|Araly1|489442|fgenesh2_kg.6__2576__AT5G25930.1
Length=3228
Score = 4795 bits (2596), Expect = 0.0
Identities = 2999/3196 (94%), Gaps = 17/3196 (1%)
Strand=Plus/Plus
Query 5 TTTGTATCCATTTCACATTCACAGTCAAACTCGGTTGCCGAAGAAATTTCCCGGCAAAAC 64
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTGTATCCGTTTCACATTCACAGTCAAACTCGGTTGCCGAAGAAATTTCCCGGCAAAAC 60
Query 65 CTCAACAAACAAAAATTAGAGAATGACTCGTT-TACCCTTACCTTTCCTTTTCTTCTTCC 123
|||||||||||||| ||| |||||||| | || |||||||||||||||| ||||||||||
Sbjct 61 CTCAACAAACAAAACTTAAAGAATGAC-CCTTCTACCCTTACCTTTCCTCTTCTTCTTCC 119
Query 124 TCACGTCAATACCCTTATCTGTCTTTTCGCAGTTCAACGACCAGTCAACGCTTCTGAACC 183
|||| |||||||||||||| |||||||| |||| |||||||||||||||||||||||||
Sbjct 120 TCACATCAATACCCTTATCCGTCTTTTCCCAGTCCAACGACCAGTCAACGCTTCTGAACG 179
Query 184 TGAAACGCGATCTCGGAGATCCACCGTCTCTCCGGCTGTGGAACAACACATCTTCACCGT 243
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 180 TGAAACGCGATCTCGGAGATCCACCGTCTCTCCAACTATGGAACAACACATCTTCACCGT 239
Query 244 GCAACTGGTCGGAGATCACTTGCACCGCCGGAAATGTCACCGGGATCAATTTCAAGAACC 303
|||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 240 GCAATTGGTCGGAGATCACTTGCACCGCCGGGAATGTCACTGGGATCAATTTCAAGAACC 299
Query 304 AGAACTTCACTGGGACAGTTCCAACGACGATATGCGATTTGTCGAATCTCAATTTCCTTG 363
|||||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 300 AGAACTTCACCGGGACAGTTCCGACGACGATATGCGATTTGTCTAATCTCAATTTCCTCG 359
Query 364 ACTTATCGTTTAATTACTTCGCCGGCGAGTTTCCGACGGTTCTTTACAATTGCACGAAGC 423
| || |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 360 ATTTGTCGTTTAATTACTTCGCCGGTGAGTTTCCGACGGTTCTTTACAATTGCACGAAAC 419
Query 424 TTCAATATCTCGATCTCTCTCAGAACCTTCTCAACGGCTCACTTCCCGTCGACATCGACC 483
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 420 TTCAATATCTCGATCTCTCTCAGAACCTTTTCAACGGCTCACTTCCCGTCGACATCGACC 479
Query 484 GTCTCTCACCGGAACTCGACTATCTCGACTTAGCTGCTAACGGATTCTCCGGCGATATCC 543
|||||||||||||||||||||||||||||||||| ||||||| ||| |||| |||||||
Sbjct 480 GTCTCTCACCGGAACTCGACTATCTCGACTTAGCAGCTAACGCCTTCGCCGGAGATATCC 539
Query 544 CTAA-AAGTCTCGGACGGATCTCGAAGCTCAAGGTATTGAATCTGTACCAGAGCGAATAC 602
|||| || | |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 540 CTAAGAA-TATCGGACGGATCTCGAAGCTCAAGGTATTGAATCTCTACCAGAGCGAATAC 598
Query 603 GACGGTACGTTTCCATCGGAGATCGGAGACTT-ATCGGAGCTTGAAGAACTTCGACTAGC 661
|||||| ||||||| |||||||||||||||| || |||||||||||||||||| ||||
Sbjct 599 GACGGTTCGTTTCCGCCGGAGATCGGAGACTTGGTC-GAGCTTGAAGAACTTCGATTAGC 657
Query 662 GTTAAACGATAAGTTTACTCCGGCTAAGATTCCGATAGAGTTTGGGAAGTTGAAGAAACT 721
|||||||||||||||||| ||||| || ||||||| ||||||||||| |||||||||||
Sbjct 658 GTTAAACGATAAGTTTACGCCGGCGAAAATTCCGACGGAGTTTGGGAAATTGAAGAAACT 717
Query 722 CAAGTATATGTGGTTAGAGGAGATGAATTTGATCGGAGAAATCTCACCCGTTGTTTTCGA 781
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 718 GAAGTATATGTGGTTAGAGGAGATGAATTTGATCGGAGAAATCTCAGCCGTTGTTTTCGA 777
Query 782 AAACATGACGGATCTTGAGCACGTTGACTTATCGGTCAATAACTTAACGGGTCGGATCCC 841
|||||||||||||||| | |||||||||||||||||||| || |||||||||||||||||
Sbjct 778 AAACATGACGGATCTTAAACACGTTGACTTATCGGTCAACAATTTAACGGGTCGGATCCC 837
Query 842 AGATGTTTTATTCGGGTTGAAGAATCTCACCGAGTTTTATCTCTTCGCTAATGGCTTAAC 901
|||||||||||||||||||||||| ||||||||| ||||||||| |||||||| ||||||
Sbjct 838 AGATGTTTTATTCGGGTTGAAGAACCTCACCGAGCTTTATCTCTACGCTAATGACTTAAC 897
Query 902 CGGAGAAATCCCCAAATCAATTTCGGCGACGAACTTGGTATTTCTTGATCTCTCTGCTAA 961
||| |||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||
Sbjct 898 CGGTGAAATCCCCAAATCTATTTCGGCGACGAACATGGTATTTCTTGATCTCTCCGCTAA 957
Query 962 TAATTTAACCGGTTCGATTCCGGTATCAATCGGAAATCTAACGAAATTACAAGTGTTAAA 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 TAATTTAACCGGTTCGATTCCGGTATCAATCGGAAATCTAACGAAATTACAAGTGTTAAA 1017
Query 1022 CCTCTTCAACAACAAGTTAACCGGAGAAATTCCACCGGTTATCGGAAAACTACCGGGATT 1081
||| || |||||| |||||||||||||||| || ||||||||||||||| |||||| |||
Sbjct 1018 CCTGTTTAACAACGAGTTAACCGGAGAAATCCCGCCGGTTATCGGAAAATTACCGGAATT 1077
Query 1082 GAAGGAGTTTAAAATCTTCAACAACAAGTTAACCGGAGAAATACCTGCAGAGATTGGAGT 1141
||||||||| || ||||||| |||||||||||||||||||||||| || ||| |||||||
Sbjct 1078 GAAGGAGTTGAAGATCTTCACCAACAAGTTAACCGGAGAAATACCGGCGGAGTTTGGAGT 1137
Query 1142 TCATTCAAAGCTGGAGAGATTCGAAGTTTCGGAGAATCAGTTAACCGGAAAGTTACCGGA 1201
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1138 TTATTCAAAGCTGGAGAGATTCGAAGTTTCGGAGAATCAGTTAACCGGAAAGTTACCGGA 1197
Query 1202 AAATTTGTGCAAAGGTGGTAAACTTCAAGGAGTGGTTGTGTACTCAAACAATCTTACCGG 1261
|| ||| |||||| | |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1198 AAGTTTATGCAAAAGAGGTAAACTTCAAGGCGTGGTTGTGTACTCAAACAATCTCACCGG 1257
Query 1262 AGAAATCCCTGAGTCGCTCGGAGATTGTGGAACGCTCTTGACTGTTCAGTTACAGAACAA 1321
||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1258 AGAAATCCCGGAGTCTCTCGGAGATTGTGGAACGCTCTTGACGGTTCAGTTACAGAACAA 1317
Query 1322 TGACTTCTCCGGCAAGTTTCCTTCTCGGATCTGGAATGCTTCAAGTATGTATAGTCTACA 1381
|| ||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||
Sbjct 1318 TGGCTTCTCCGGCAAGTTTCCTTCTCGGATTTGGACTGCTTCAAGTATGTATAGTTTACA 1377
Query 1382 GGTGAGTAACAACTCATTCACCGGAGAGTTACCGGAGAATGTTGCTTGGAATATGTCGAG 1441
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1378 GGTGAGTAACAACTCATTCACCGGAGAATTACCGGAGAATGTCGCTTGGAATATGTCGAG 1437
Query 1442 GATCGAGATTGATAACAATCGATTTTCCGGTGAGATTCCGAAGAAAATCGGTACTTGGTC 1501
|||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||
Sbjct 1438 GATCGAGATTGATAACAATCGATTTTACGGTGTGATTCCTCGGAAAATCGGTACTTGGTC 1497
Query 1502 TTCCTTAGTTGAGTTTAAGGCGGGAAACAATCAGTTTTCTGGTGAGTTTCCGAAGGAATT 1561
||| |||||||||||||||||||||||||||| |||||| |||||| |||||||||||||
Sbjct 1498 TTCTTTAGTTGAGTTTAAGGCGGGAAACAATCGGTTTTCCGGTGAGATTCCGAAGGAATT 1557
Query 1562 GACTTCTCTTTCGAATCTCATATCGATCTTTCTCGATGAGAATGATCTCACCGGTGAATT 1621
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1558 GACTTCTCTTTCGAATCTTTTATCGATCTTTCTCGATGAGAATGATCTCACCGGTGAATT 1617
Query 1622 ACCGGATGAGATCATCTCATGGAAGTCGTTGATAACGTTAAGTTTATCCAAGAACAAGCT 1681
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1618 ACCGGATGATATCATCTCATGGAAGTCGTTGATAACGTTAAGTTTATCCAAGAATAAGCT 1677
Query 1682 TTCCGGGGAA-ATTCCGAGAGCTTTAGGATTGTTGCCACGTCTGCTCAATCTTGATCTAT 1740
|| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1678 TT-CGGGGAAGATTCCGAGAGCTTTAGGATTGTTGCCACGTTTGCTCAATCTTGATCTAT 1736
Query 1741 CGGAGAATCAATTCTCCGGTGGAATCCCACCGGAGATTGGGAGCCTGAAGCTGACAACAT 1800
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1737 CGGAGAATCAATTCTCCGGTGGAATCCCACCGGAGATCGGGAGTTTGAAGCTGACAACAC 1796
Query 1801 TTAATGTGTCATCAAATAGACTCACTGGAGGAATACCAGAGCAACTTGATAATCTTGCTT 1860
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1797 TTAATGTGTCATCAAATAGACTCACCGGAGGAATCCCAGAGCAACTTGATAATCTTGCTT 1856
Query 1861 ACGAGAGAAGTTTCTTGAACAACTCTAATCTTTGTGCAGACAACCCGGTTCTCAGCTTAC 1920
||||||||||||||||||||||||| ||||||||||||||||| || ||||||| ||||
Sbjct 1857 ACGAGAGAAGTTTCTTGAACAACTCCAATCTTTGTGCAGACAAGCCAGTTCTCAATTTAC 1916
Query 1921 CGGATTGTCGGAAACAGCGCCGGGGATCAAGAGGGTTCCCCGGGAAAATCCTCGCGATGA 1980
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1917 CGGATTGTCGGAAACAGCGCCGGGGATCAAGAGGGTTGCCGGGGAAAATCCTCGCGATGA 1976
Query 1981 TTCTAGTCATCGCGGTTCTGCTTCTCACCATTACTCTGTTTGTTACGTTCTTTGTGGTTA 2040
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1977 TTCTAGTCATCGCTGTTCTGCTTCTCACTATTACTCTGTTTGTTACGTTCTTTGTGATTC 2036
Query 2041 GGGACTACACAAGGAAACAAAGAAGAAGAGGTCTAGAGACGTGGAAACTCACTTCATTTC 2100
| || |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 2037 GAGATTACACAAGGAAACAAAGAAGGAGAGGTCTAGAGACGTGGAAACTAACTTCATTTC 2096
Query 2101 ATAGAGTAGATTTTGCGGAATCCGACATCGTGTCGAATCTGATGGAACACTACGTGATCG 2160
||||||| |||||||||||||| || || ||||||||||||||||||||||| |||||||
Sbjct 2097 ATAGAGTTGATTTTGCGGAATCTGATATAGTGTCGAATCTGATGGAACACTATGTGATCG 2156
Query 2161 GTAGTGGCGGATCGGGCAAAGTTTACAAGATTTTCGTCGAAAGCTCGGGACAATGTGTGG 2220
| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 2157 GGAGTGGCGGATCGGGAAAAGTTTACAAGATATTCGTCGAAAGCTCGGGACAATGCGTGG 2216
Query 2221 CAGTGAAGAGGATATGGGACAGCAAGAAACTGGACCAGAAACTTGAGAAGGAGTTTATTG 2280
| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2217 CGGTGAAGAGAATCTGGGACAGCAAGAAACTGGACCAGAAACTTGAGAAGGAGTTTATTG 2276
Query 2281 CTGAAGTTGAGATTCTTGGAACGATCAGGCACTCGAATATAGTGAAACTATTGTGTTGTA 2340
|||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||
Sbjct 2277 CTGAAGTTGAGATTCTTGGAACGATCAGGCACTCGAATATCGTGAAACTACTGTGTTGTA 2336
Query 2341 TCTCAAGGGAAGATTCAAAGCTTCTAGTGTATGAGTATCTCGAGAAACGCAGTCTTGATC 2400
|||| ||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 2337 TCTCGAGGGAGGATTCAAAGCTTCTGGTGTACGAGTATCTCGAGAAACGCAGTCTTGATC 2396
Query 2401 AATGGTTACATGGAAAGAAGAAGGGAGGTACCGTAGAGGCTAATAACCTTACATGGTCAC 2460
||||| ||||||| ||||||||| ||||||| || || ||||||||||| |||||| |||
Sbjct 2397 AATGGCTACATGGCAAGAAGAAGAGAGGTACTGTTGATGCTAATAACCTGACATGGCCAC 2456
Query 2461 AGAGGTTGAATATCGCAGTTGGAGCAGCTCAAGGACTTTGCTATATGCATCATGATTGTA 2520
| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 2457 AAAGGTTGAATATCGCGGTTGGAGCAGCTCAAGGACTTTGCTATATGCATCACGATTGCA 2516
Query 2521 CTCCCGCAATCATACATAGAGATGTCAAGTCGAGTAACATCTTGCTTGATTCTGAATTCA 2580
||||||| |||||||| |||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 2517 CTCCCGCGATCATACACAGAGATGTTAAGTCAAGTAACATCTTGCTTGATTCTGAATTCA 2576
Query 2581 ACGCGAAGATTGCAGATTTCGGGTTGGCTAAACTGTTGATTAAGCAAAACCAAGAACCTC 2640
|||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 2577 ACGCGAAGATTGCAGATTTCGGGTTGGCCAAACTGTTGATTAAGCAAAACCAACAACCTC 2636
Query 2641 ATACCATGTCAGCTGTTGCTGGATCCTTTGGTTACATTGCTCCAGAATACGCATATACGT 2700
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 2637 ATACCATGTCAGCTGTTGCTGGATCCTTCGGTTACATTGCTCCAGAATACGCATATACAT 2696
Query 2701 CAAAGGTAGATGAGAAGATCGATGTGTACAGCTTCGGGGTAGTTTTGCTAGAGCTGGTGA 2760
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2697 CGAAGGTAGATGAGAAGATCGATGTGTACAGCTTCGGGGTAGTTTTGCTAGAGCTGGTGA 2756
Query 2761 CTGGAAGAGAAGGAAACAACGGAGATGAACACACAAACTTAGCAGATTGGTCATGGAAAC 2820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2757 CTGGAAGAGAAGGAAACAACGGAGATGAACACACAAACTTAGCAGATTGGTCATGGAGAC 2816
Query 2821 ATTACCAATCTGGAAAACCGACCGCAGAGGCGTTTGATGAGGACATCAAAGAAGCTTCCA 2880
|||||||||| || ||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 2817 ATTACCAATCCGGGAAACCAACCTCAGAGGCGTTTGATGAGGACATCAAAGAAGCTTCCA 2876
Query 2881 CGACTGAGGCGATGACAACAGTTTTCAAGCTAGGTCTCATGTGTACTAACACATTGCCTA 2940
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2877 CAACAGAGGCGATGACAACAGTTTTCAAGCTAGGTCTCATGTGTACTAACACATTGCCTA 2936
Query 2941 GTCATAGACCTTCCATGAAAGAGGTCTTGTATGTTCTGCGCCAACAAGGACTTGAGGCGA 3000
|||| |||||||| ||||||||| |||||||||||||| ||||||||||||||| |||||
Sbjct 2937 GTCACAGACCTTCAATGAAAGAGATCTTGTATGTTCTGAGCCAACAAGGACTTGGGGCGA 2996
Query 3001 CGAAGAAGACTGCAACAGAGGCATATGAGGCACCTCTACTAGTTAGTTTATCGGGTCGAA 3060
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2997 CGAAGAAGACTGCAACAGAGGCACATGAGGCACCTCTACTAGTTAGTTTATCGGGTCGAA 3056
Query 3061 GGACAAGTAAAAGGGTAGAAGATGAAGATTTAGGTTTTGTATAATCAAATAATCACAACA 3120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3057 GGACAAGCAAAAGGGTAGAAGATGAAGATTTAGGTTTTGTATAATCAAATAATCACAATT 3116
Query 3121 CTTGATGTT-Gtttttttt--G-TG-A-AATGTACAAATGTATTAGAAACCATTTA-G-T 3172
|||| ||| |||||||| | | | ||||||||||||||||||||||| |||| | |
Sbjct 3117 TTTGAGGTTTGTTTTTTTGAAGATCTAGAATGTACAAATGTATTAGAAACC-TTTATGGT 3175
Query 3173 TTTTGTGTAAGCAAAG 3188
||||||||||||||||
Sbjct 3176 TTTTGTGTAAGCAAAG 3191
> Ahg894518 jgi|Araly1|894518|Al_scaffold_0006_2514
Length=912
Score = 1173 bits (635), Expect = 0.0
Identities = 783/854 (92%), Gaps = 12/854 (1%)
Strand=Plus/Plus
Query 87 ATGACTCGTTTACCCTTACCTTTCCTTTTCTTCTTCCTC-ACGTCAATACCCTTATCTGT 145
||||||| |||||||||||| ||||| |||||||||||| || |||||||||||||| ||
Sbjct 1 ATGACTCTTTTACCCTTACCCTTCCTCTTCTTCTTCCTCAAC-TCAATACCCTTATCCGT 59
Query 146 CTTTTCGCAGTTCAACGACCAGTCAACGCTTCTGAACCTGAAACGCGATCTCGGAGATCC 205
|||||| |||| |||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 60 CTTTTCACAGTCCAACGACCAGTCAACGCTCCTGAACCTAAAACGCGATCTCGGAGATCC 119
Query 206 ACCGTCTCTCCGGCTGTGGAACAACACATCTTCACCGTGCAACTGGTCGGAGATCACTTG 265
||||||||||||||| |||||| |||| |||||||||||||| ||||||||||||| |||
Sbjct 120 ACCGTCTCTCCGGCTATGGAACGACACCTCTTCACCGTGCAATTGGTCGGAGATCATTTG 179
Query 266 CACCGCCGGAAATGTCACCGGGATCAATTTCAAGAACCAGAACTTCACTGGGACAGTTCC 325
||||||||||||| |||| |||||||||||||||||| |||||||||| |||||||||||
Sbjct 180 CACCGCCGGAAATATCACTGGGATCAATTTCAAGAACAAGAACTTCACCGGGACAGTTCC 239
Query 326 AACGACGATATGCGATTTGTCGAATCTCAATTTCCTTGACTTATCGTTTAATTACTTCGC 385
||||||||||||||||||||||||||||||||||| || |||||||||||| |||||||
Sbjct 240 GACGACGATATGCGATTTGTCGAATCTCAATTTCCTCGATTTATCGTTTAATAACTTCGC 299
Query 386 CGGCGAGTTTCCGACGGTTCTTTACAATTGCACGAAGCTTCAATATCTCGATCTCTCTCA 445
|||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 300 CGGCGAGTTTACGACGGTTCTTTACAAGTGCACGAAGCTTCAATATCTCGATCTCTCTCT 359
Query 446 GAACCTTCTCAACGGCTCACTTCCCGTCGACATCGACCGTCTCTCACCGGAACTCGACTA 505
|||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 GAACGTTTTCAACGGCTCACTTCCCGTCGACATCGACCGTCTCTCACCGGAACTTGACTA 419
Query 506 TCTCGACTTAGCTGCTAACGGA-TTCTCCGGCGATATCCCTAA-AAGTCTCGGACGGATC 563
|||||||||||| ||||||| | ||| |||| ||||||||||| || | |||||| |||
Sbjct 420 TCTCGACTTAGCAGCTAACG-ACTTCGCCGGAGATATCCCTAAGAA-TATCGGACATATC 477
Query 564 TCGAAGCTCAAGGTATTGAATCTGTACCAGAGCGAATACGACGGTACGTTTCCATCGGAG 623
||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 478 TCGAAACTCAAGGTATTGAATCTGTACCAGAGCGAATACGACGGAACGTTTCCGTCGGAG 537
Query 624 ATCGGAGACTTA-TCGGAGCTTGAAGAACTTCGACTAGCGTTAAACGATAAGTTTACTCC 682
||||||||||| ||| ||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 538 ATCGGAGACTTGGTCG-AGCTTGAAGAACTTCGATTAGCGTTAAACGATAAGTTTACGCC 596
Query 683 GGCTAAGATTCCGATAGAGTTTGGGAAGTTGAAGAAACTCAAGTATATGTGGTTAGA-GG 741
||| ||| | |||| |||||| |||| ||||||||||| ||||||||||||||| | ||
Sbjct 597 GGCGAAGCTCCCGACGGAGTTTCGGAAATTGAAGAAACTGAAGTATATGTGGTTA-ACGG 655
Query 742 AGATGAATTTGATCGGAGAAATCTCACCCGTTGTTTTCGAAAACATGACGGATCTTGAGC 801
|||||||||||||||||||||||||| ||||||||||||| |||||||||| |||| | |
Sbjct 656 AGATGAATTTGATCGGAGAAATCTCAGCCGTTGTTTTCGAGAACATGACGGGTCTTAAAC 715
Query 802 ACGTTGACTTATCGGTCAATAACTTAACGGGTCGGATCCCAGATGTTTTATTCGGGTTGA 861
||||||||||||||| ||| || |||||||||||||||||||||||||||||||||||||
Sbjct 716 ACGTTGACTTATCGGGCAACAATTTAACGGGTCGGATCCCAGATGTTTTATTCGGGTTGA 775
Query 862 AGAATCTCACCGAGT-TTTATCTCTTCGCTAATGGCTTAACCGGAGAAATCCCCAAATCA 920
|||||||||| | | ||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 776 AGAATCTCACTAA-TCTTTATCTCTACGCTAATGACTTAACCGGAGAAATCCCCAAATCA 834
Query 921 ATTTCGGCGACGAA 934
||||||||||||||
Sbjct 835 ATTTCGGCGACGAA 848
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 123382651666
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5