BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G25940.1

Length=578
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942174 jgi|Araly1|942174|scaffold_602718.1                        582    8e-166


> Ahg942174 jgi|Araly1|942174|scaffold_602718.1
Length=388

 Score =  582 bits (315),  Expect = 8e-166
 Identities = 363/387 (94%), Gaps = 0/387 (0%)
 Strand=Plus/Plus

Query  81   TCAAAAAAGCGACACTGAAAATGGAAAATCGGTCAGAAATGGGTAACCGGAGGCAGCAGA  140
            |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||
Sbjct  1    TCAAAAAAGCGACACTGAAAATGGAAAACCGGTCAGAAATGGTTAACCGGAGGCAGCAGA  60

Query  141  ATCTCTTCGTCATAGCTTCTCCCGACGAGATTGCTAAGATCCATCGAGCCGAAACTTCCA  200
            |||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct  61   ATCTCTTCCTCATAGCTTCTCCCGACGAGATTGATAAGATCCGTCGAGCCGAAACTTCCA  120

Query  201  AACAAGCCGGAGCTATTGCCGGAGCTAAGGCCGCCGCCGTTGCCGCCGTCGCCAGTGCGA  260
              ||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct  121  GTCAAGCCGGAGCTATTGCCGGAGCTAAGGCAGCCGCCGTAGCCGCCGTCGCCAGTGCGA  180

Query  261  TTCCCACAGTAGCTGCCGTTCGTATGTTCCCGTGGGCTAAGGCAAACCTCAACTACACTG  320
            |||||||||||||||| |||||  ||||||||||||| ||||||||||| ||||||||||
Sbjct  181  TTCCCACAGTAGCTGCGGTTCGCGTGTTCCCGTGGGCAAAGGCAAACCTTAACTACACTG  240

Query  321  CTCAAGCACTCATTATTTCTTCAGCTTCTATCGCTGCGTTCTTCATAACCGCGGATAAAA  380
            |||| ||||||||||| ||| |||| || |||||||||||||||||||||||||| ||||
Sbjct  241  CTCAGGCACTCATTATATCTGCAGCATCCATCGCTGCGTTCTTCATAACCGCGGACAAAA  300

Query  381  CGATTCTACAAGGCGCAAGAAGAAACACCGAGGCTCAGTTAAAGAAAGTTCAGCAAGACT  440
            | |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct  301  CCATTCTACAAGGCGCGAGAAGAAACACCGAGGCTCAGTTAAAGAAAGCTCAGCAAGACT  360

Query  441  CTAAATAATTTCTCTTCTTATTGTAAC  467
            |||||||| ||||||||||||||||||
Sbjct  361  CTAAATAAATTCTCTTCTTATTGTAAC  387



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21138196306


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5