BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25950.1
Length=1538
Score E
Sequences producing significant alignments: (Bits) Value
Ahg351608 jgi|Araly1|351608|fgenesh1_pg.C_scaffold_6002201 1770 0.0
Ahg351609 jgi|Araly1|351609|fgenesh1_pg.C_scaffold_6002202 1369 0.0
> Ahg351608 jgi|Araly1|351608|fgenesh1_pg.C_scaffold_6002201
Length=1245
Score = 1770 bits (958), Expect = 0.0
Identities = 1156/1251 (92%), Gaps = 15/1251 (1%)
Strand=Plus/Plus
Query 161 ATGAGATTTTTCTTAAT-CTTTGTGATTTTGTGTGGTTTTTACAATGAAGCATATGGGAA 219
|||||||| |||||||| | |||||||||||||||| |||||||||||||| ||||||||
Sbjct 1 ATGAGATTGTTCTTAATAC-TTGTGATTTTGTGTGGATTTTACAATGAAGCCTATGGGAA 59
Query 220 AGGTTCTTTAGATATTGATCTGAAATTGAAGGCTCTTAATAAACCTGCGTTGAAGACCAT 279
||||||||||||||||||| | |||||||||||||||||||| || ||||||||||||||
Sbjct 60 AGGTTCTTTAGATATTGATATAAAATTGAAGGCTCTTAATAAGCCAGCGTTGAAGACCAT 119
Query 280 CAAGAGCGA-AGATGGAGATATAATAGATTGTATAGATATCTATAAACAACATGCCTTTG 338
|||||| | |||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 120 CAAGAG-TACAGATGGAGATATAATAGATTGTATCGATATCTACAAACAACATGCCTTTG 178
Query 339 ATCATCCCGCTTTAAAAAACCACAAAATTCAGATGAAACCGAGTGTGAAATTTGGTACAA 398
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 179 ATCATCCCGCTTTAAGAAACCACAAAATTCAGATGAAACCGAGTGTGGAATTTGGTACAA 238
Query 399 AGAAG---ACTACTATACCAAACAACGGTTCTTCTGAACACATAAAATCTCAGATTTGGT 455
||||| |||||||||||||||||||||||||||||||| || | |||||| ||||||
Sbjct 239 AGAAGACTACTACTATACCAAACAACGGTTCTTCTGAACAAATTACGTCTCAGGTTTGGT 298
Query 456 CTAAATCCGGAAAATGTCCAATGGGGACCATACCGGTTCGTAGAGTTAGTAGAGAAGACA 515
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 299 CTAAATCCGGAAACTGTCCAATGGGGACAATACCGGTTCGTAGAGTTAGTAGAGAAGACA 358
Query 516 TAAGCAGAGCCTCTTCACCGTCTCATTTTGGGAGGAAAACTCCTCACAAATAC-AGCTTT 574
||||||||||||||||||||||| | |||||||||||||||||||||| |||| || |||
Sbjct 359 TAAGCAGAGCCTCTTCACCGTCTGAATTTGGGAGGAAAACTCCTCACAGATACAAG-TTT 417
Query 575 CTAGACAACGCACTTCAACATAAGGGTAATTTCAATATAACACCTGCAAAAATAAA-CGA 633
|| ||||||||||||||||| ||||||||||||||||||||| | | ||||||||| | |
Sbjct 418 CTCGACAACGCACTTCAACACAAGGGTAATTTCAATATAACAGCAGAAAAAATAAATC-A 476
Query 634 AGCCCAACCAAGGTTAAGATCGGAGGCATTTATTGTGGCCCTAGGGTTCAATTTTGTCGG 693
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 477 AGCCCAACCAAGGTTACGATCGGAGGCATTTATTGTGGCCCTAGGGTACAATTTTGTCGG 536
Query 694 AGCTCAATCTGATATAAATATTTGGAACCCTCCGAGGGTTGAAGCTACCGACTACAGTAC 753
|||||| |||||||||||||||||||||||| |||||||||| |||| ||||||||| ||
Sbjct 537 AGCTCAGTCTGATATAAATATTTGGAACCCTTCGAGGGTTGAGGCTAGCGACTACAGCAC 596
Query 754 TGCCCAGATCTGGCTGGTTGGTGGTCTCTCAGAGAATTTTGAGAGCGTTGAAGGTGGTTG 813
|||||| |||||||||||||||||||||||||| | |||||||||| | |||| ||||||
Sbjct 597 TGCCCAAATCTGGCTGGTTGGTGGTCTCTCAGATACTTTTGAGAGCCTAGAAGCTGGTTG 656
Query 814 GATGGTGAATCCAGCTGTTTTCGGAGACTCACGTACCCGTCTCTTCATCTCCTGGACTAC 873
|||||||||||| || |||||||||||||||||||| |||||||||||||| |||||||
Sbjct 657 GATGGTGAATCCGGCCGTTTTCGGAGACTCACGTACACGTCTCTTCATCTCATGGACTAG 716
Query 874 AGATGGATACACTAAAACAGGGTGCATCAATCTCTTATGCGCGGGTTTTGTGCAAACAAG 933
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 717 AGATGCATACACTAAAACAGGGTGCATTAATCTCTTATGCGCGGGTTTTGTGCAAACAAG 776
Query 934 TAAAAAATTTGCCCTTGGTGCAACCGTTGAACCTGTTTCGAGTTCCTCTAGTACGCAATA 993
| ||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||
Sbjct 777 TCAAAAATTTGCCCTTGGTGCAACCATTGAACCTGTTTCGAGTGCCTCGAGTACGCAATA 836
Query 994 TCACATCACCGTTAGCATATTCCTTGATCCAAACAGTGGGAACTGGTGGTTGACTTGCGA 1053
| |||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||
Sbjct 837 TGACATCACCGTTAGCGTGTTCCTGGATCCAAACAGTGGGAACTGGTGGTTGACTTGCGC 896
Query 1054 AAACAACGTGTTGGGTTATTGGCC-GGGTACACTATTCAACTACCTAAAACACAGCGCCA 1112
|||||||||| ||||||||||||| ||| ||||| ||||||||||| ||||| ||||| |
Sbjct 897 AAACAACGTGATGGGTTATTGGCCAGGG-ACACTCTTCAACTACCTTAAACATAGCGCAA 955
Query 1113 CAGCTGTGCAGTGGGGTGGAGAAGTACATAGCCCTAACGTAGTATTGAAGAAGCCACACA 1172
| ||||||||||||||||||||||||||||||||||||||| || | |||||||||||||
Sbjct 956 CCGCTGTGCAGTGGGGTGGAGAAGTACATAGCCCTAACGTAATACTAAAGAAGCCACACA 1015
Query 1173 CGACAACCGCAATGGGGAGTGGACAATGGGCATCTTACATCTGGGCCGAAGCTTGTTTCC 1232
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1016 CGACAACCTCAATGGGGAGTGGACAATGGGCATCTTACATTTGGGCCGAAGCTTGTTACC 1075
Query 1233 ACACAAACCTTAGGATCAAGGACTATTCCATGCAGCTCAAATACCCCCAGTTTCTATCCG 1292
|||| ||| |||||||||||||||||||||||||| ||||||||||| ||| ||| || |
Sbjct 1076 ACACTAACATTAGGATCAAGGACTATTCCATGCAGATCAAATACCCCAAGTATCTCTCAG 1135
Query 1293 AGTATGCTGATGAGTA-CAACTGTTATTCTACACTGCTCCACCGGAAAACATATATGTCA 1351
|||| ||||||||||| || |||||||||||| |||||||||||||||||||||||||
Sbjct 1136 AGTACGCTGATGAGTATGAA-TGTTATTCTACAAAGCTCCACCGGAAAACATATATGTCA 1194
Query 1352 GAGCCCCACTTTTACTTCGGAGGACCTGGCCGGAACTCTCGTTGTCCTTAA 1402
||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1195 GAGCCCCACTTTTACTTCGGAGGACCTGGCCGGAATTCTCGTTGTCCTTAA 1245
> Ahg351609 jgi|Araly1|351609|fgenesh1_pg.C_scaffold_6002202
Length=1242
Score = 1369 bits (741), Expect = 0.0
Identities = 1091/1258 (87%), Gaps = 32/1258 (3%)
Strand=Plus/Plus
Query 161 ATGAGATTTTTCTTAATCTTTGTGATTTTGTGTGG--T-TTTTACAATGAAGCATATGGG 217
|||||||| |||||| | |||| |||| |||| || | ||||| |||| ||| ||||||
Sbjct 1 ATGAGATTGTTCTTAGTGTTTGCGATTCTGTGGGGCTTATTTTATAATGTAGCCTATGGG 60
Query 218 AAAGGTTCTTTAGATATTGATCTGAAATTGAAGGCTCTTAATAAACCTGCGTTGAAGACC 277
||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||||
Sbjct 61 AAAGGTTCTTTAGATATTGATATGAAACTGAAGGCTCTTAATAAGCCTGCGTTGAAGACC 120
Query 278 ATCAAGAGCGAAGATGGAGATATAATAGATTGTATAGATATCTATAAACAACATGCCTTT 337
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 121 ATCAAGAGCGAAGATGGAGATATAATAGATTGTATAGACATCTATAAACAACATGCCTTT 180
Query 338 GATCATCCCGCTTTAAAAAACCACAAAATTCAGATGAAACCGAGTGTGA-AATTTGGTAC 396
|||||||| ||||||| ||||||||||||||||||||||| ||| | | ||||||||||
Sbjct 181 GATCATCCGGCTTTAAGGAACCACAAAATTCAGATGAAACCAAGTAT-AGAATTTGGTAC 239
Query 397 AAAGAAGACTACTATACCAAACAACGGTTCTTCTGAAC-ACATAAAATCTCAGATTTGGT 455
|||||||||||||||||||||||||||||||||||||| | || | |||||||||||||
Sbjct 240 AAAGAAGACTACTATACCAAACAACGGTTCTTCTGAACTA-ATTACGTCTCAGATTTGGT 298
Query 456 CTAAATCCGGAAAATGT-CCAATGGGGACCATACCGGTTCGTAGAGTTAGTAGAGAAGAC 514
| ||||||||||| ||| |||| ||||| ||||||||||||||||||||||||||||||
Sbjct 299 CCAAATCCGGAAACTGTCCCAA-AGGGACAATACCGGTTCGTAGAGTTAGTAGAGAAGAC 357
Query 515 ATAAGCAGAGCCTCTTCACCGTCTCATTTTGGGAGGAAAACTCCTCACAAATACAGCTTT 574
||||||||||||||||||||||||||||||||||| |||||||| |||| ||| ||||||
Sbjct 358 ATAAGCAGAGCCTCTTCACCGTCTCATTTTGGGAGAAAAACTCCACACAGATATAGCTTT 417
Query 575 CTAGACAACGCACTTCAACATAAGGGTAATTTCAATATAACACCTGCAAAAATAAACGAA 634
|| ||||| ||||||||||| ||||||||||||||||||||| ||| |||||||| | |
Sbjct 418 CTCGACAAGGCACTTCAACACAAGGGTAATTTCAATATAACAGCTGAAAAAATAA-CTCA 476
Query 635 -GCCCAACCAAGG-TTAAGATCGGAGGCATTTATTGTGGCCCTAGGGTTCAATTTTGTCG 692
|||| |||| | || ||||||||||| | || | ||| ||||||| |||||| | |
Sbjct 477 TGCCCGCCCAAAGCTTC-GATCGGAGGCAGTCCTTATCGCCTTAGGGTTTAATTTTATTG 535
Query 693 GAGCTCAATCTGATATAAATATTTGGAACCCTCCGAGGGTTGAAGCTACCGACTACAG-T 751
|||||||||| ||||||||| | |||||||||||||||||| | |||| ||| ||||| |
Sbjct 536 GAGCTCAATCCGATATAAATGTATGGAACCCTCCGAGGGTTCAGGCTAGCGATTACAGCT 595
Query 752 ACTGCCCAGATCTGGCTGGTTGGTGGTCTCTCAGAGAATTTTGAGAGCGTTGAAGGTGGT 811
|||| ||||| ||||| ||||||| |||||||| | |||||| ||| | |||| ||||
Sbjct 596 -CTGCTCAGATATGGCTTCTTGGTGGCCTCTCAGATACTTTTGAAAGCATAGAAGCTGGT 654
Query 812 TGGATGGTGAATCCA-GCTGTTTTCGGAGACTCACGTACCCGTCTCTTCATCTCCT-GGA 869
||| |||||||||| || |||||||||||||| || || |||||||||| || | |||
Sbjct 655 TGGGCGGTGAATCCACGC-GTTTTCGGAGACTCCCGCACACGTCTCTTCA-CTTATTGGA 712
Query 870 CTACAGATGGATACACTAAAACAGGGTGCATCAATCTCTTATGCGCGGGTTTTGTGCAAA 929
||| ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 713 CTAAAGATGGATACACTAAAACAGGGTGCGTCAACCTCTTATGCGCGGGTTTTGTGCAAA 772
Query 930 CAAGTAAAAAATTTGCCCTTGG-TGCAACCGTTGAACCTGTTTCGAGTTCCTCT-AGTAC 987
||| || || || ||| |||| |||| | | ||||||||||||| | |||| | |
Sbjct 773 CAACTACTAAGTTAGCC-TTGGGTGCAGCAATAGAACCTGTTTCGACTACCTCGCAAAAA 831
Query 988 GCAATATCACATCACCGTTAGCATATTCCTTG-ATCCAAACAGTGGGAACTGGTGGTTGA 1046
||| || |||||||||| ||||| ||| ||| |||||||||| ||||| ||||||||||
Sbjct 832 -CAACATTACATCACCGTCAGCATGTTC-TTGGATCCAAACAGCGGGAATTGGTGGTTGA 889
Query 1047 CTTGCG-AAAACAACGTGTTGGGTTATTGGCCGGGTACACTATTCAACTACCTAAAACAC 1105
|||| | |||| ||||| | |||||||||||||| ||||| |||| |||||| |||||
Sbjct 890 CTTGTGCAAAA-AACGTAATAGGTTATTGGCCGGGGACACTCTTCACCTACCTTAAACAT 948
Query 1106 AGCGCCACAGCTGTGCAGTGGGGTGGAGAAGTACATAGCCCTAACGTAGTATTGAAGAAG 1165
||||| || ||||||||||||||||||||||| |||||||||||||| | |||||||
Sbjct 949 AGCGCAACCGCTGTGCAGTGGGGTGGAGAAGTGCATAGCCCTAACGTGGG---GAAGAAG 1005
Query 1166 CCACACACGACAACCGCAATGGGGAGTGGACAATGGGCATCTTACATCTGGGCCGAAGCT 1225
||||| |||| ||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1006 CCACATACGAGAACTTCAATGGGGAGTGGACAATGGGCATCTTACCTCTGGGCCCAAGCT 1065
Query 1226 TGTTTCCACACAAACCTTAGGATCAAGGACTATTCCATGCAGCTCAAATACCCC-CAGTT 1284
|||| |||||| ||| |||||||||||||||||||||||||| ||||||| ||| || |
Sbjct 1066 TGTTACCACACCAACATTAGGATCAAGGACTATTCCATGCAGATCAAATATCCCACA-TA 1124
Query 1285 TCTATCCGAGTATGCTGATGAGTACAACTGTTATTCTACACTGCTCCACCGGAAAACATA 1344
||| |||||||| |||||||||||| |||||||||| ||| ||||||||||||||||||
Sbjct 1125 TCTCTCCGAGTACGCTGATGAGTACGACTGTTATTCGACAAAGCTCCACCGGAAAACATA 1184
Query 1345 TATGTCAGAGCCCCACTTTTACTTCGGAGGACCTGGCCGGAACTCTCGTTGTCCTTAA 1402
||||||||||||||| |||||||| ||||||||||||| || |||||||||||||||
Sbjct 1185 TATGTCAGAGCCCCATTTTTACTTTGGAGGACCTGGCCAAAATTCTCGTTGTCCTTAA 1242
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57592450440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5