BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G25970.1
Length=1417
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942179 jgi|Araly1|942179|scaffold_602723.1 1748 0.0
Ahg351610 jgi|Araly1|351610|fgenesh1_pg.C_scaffold_6002203 1729 0.0
> Ahg942179 jgi|Araly1|942179|scaffold_602723.1
Length=1201
Score = 1748 bits (946), Expect = 0.0
Identities = 1105/1182 (93%), Gaps = 9/1182 (1%)
Strand=Plus/Plus
Query 239 ATATCTAGTGTAAGGATGCAGTGTAGTAGGGTTCTTCAGTTGGAAGAAGGTAAAGAGATT 298
|||||||||||||||||||| | ||||||||| |||||||||||||||||||||| |||
Sbjct 6 ATATCTAGTGTAAGGATGCA--G-AGTAGGGTTATTCAGTTGGAAGAAGGTAAAGATATT 62
Query 299 GTAGTTACAAGCAGCCGGACCGGGCTTACTAAGGCGTTTCCTTACAAGTTGCTTCTCTTG 358
|||||||| || ||||| ||||||| | |||||||||||||| |||||| |||||||||
Sbjct 63 GTAGTTACGGGCGGCCGGGCCGGGCTAAATAAGGCGTTTCCTTTCAAGTTACTTCTCTTG 122
Query 359 CTAGGtttttttCTAGCTTTTACTGTTGTTTTATTCTTCATTAGTGTATCCACCA-TCAA 417
||||| |||||||||||||||||||||||||| ||||||||||||||||||| || ||||
Sbjct 123 CTAGGATTTTTTCTAGCTTTTACTGTTGTTTTGTTCTTCATTAGTGTATCCA-CATTCAA 181
Query 418 GTATTATGGAATCAATAGTGTAGTGACTTCAGTCACTTCTAGTTTTGTGCCTTGCCACGA 477
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 182 GTATTATGGAATCAATAGTGTAGTGACTTCAGTCACGTCTAGTTTTGTGCCTTGCCACGA 241
Query 478 GAAAATAAATGATCTTGATAAATGGATCAAACCTCTTGTGGTTCTCATGCATAATATGAG 537
||||| ||| |||||| |||||||||| ||||||| | ||||||||||||||||||||||
Sbjct 242 GAAAAGAAACGATCTTCATAAATGGATTAAACCTCCTATGGTTCTCATGCATAATATGAG 301
Query 538 CGATGAAGAGCTTCTTTGGGGTGCATCTTTCATGCCTCGGAGGAAAGAGTACCCGTTTAA 597
||||||||| ||||||||| |||| |||||||||||| |||||||||||| ||||||||
Sbjct 302 CGATGAAGAACTTCTTTGGCGTGCGTCTTTCATGCCTAAGAGGAAAGAGTATCCGTTTAA 361
Query 598 TCGGGTCCCTAAAATCGCGTTTATGTTCTTGACAATGGGTCCTTTGCCTCTTGCACCGCT 657
| |||| || |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 362 TAGGGTGCCGAAAATCGCGTTTATGTTCTTGACAATGGGTCCTTTGCCGCTTGCACCGCT 421
Query 658 TTGGGAGAGGTTATTAAAGGGTCATGAGAAGCTTTACTCAGTTTATATCCATTCACCTGT 717
|||||| ||||||||||||||||||||||||| ||| |||||||| ||||||||| | ||
Sbjct 422 TTGGGAAAGGTTATTAAAGGGTCATGAGAAGCATTATTCAGTTTACATCCATTCAACAGT 481
Query 718 ATCTTCTTCAGCTAAGTTTCCAGCTTCCTCTGTTTTCTACCGTAGGCATATACCAAGTCA 777
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 482 ATCGTCTTCAGCCAAGTTTCCAGCTTCCTCTGTTTTCTACCGTAGGCATATACCAAGTCA 541
Query 778 GGTTGCAGAATGGGGAAGAATGACAATGTGCGATGCAGAGAGGCGGCTTCTTGCAAATGC 837
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 542 GGTTGCAGAATGGGGAAGAATGACAATGTGCGATGCAGAGAGGCGGCTTCTTGCCAATGC 601
Query 838 GCTACTCGATATCTCAAACGAATGGTTTGTTCTCCTCTCCGAGTCATGCATTCCCCTATT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 602 GCTACTCGATATCTCAAACGAATGGTTTGTTCTCCTCTCCGAGTCATGCATTCCCCTCTT 661
Query 898 CAACTTCACAACTATCTACACGTACATGACCAAATCAGAGCATAGCTTTATGGGTTCATT 957
||||||||||||||||||||| ||||| ||||||||| |||| |||||||||||||||||
Sbjct 662 CAACTTCACAACTATCTACACTTACATAACCAAATCAAAGCACAGCTTTATGGGTTCATT 721
Query 958 TGATGATCCTGGTGCATATGGCAGAGGCCGCTACCACGGCAACATGGCCCCTGAAGTTTT 1017
|||||||||| || | |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 722 TGATGATCCTAGTCCCTATGGCCGAGGCCGCTACCACGGCAACATGGCCCCTGAAGTTTC 781
Query 1018 CATAGACCAATGGAGAAAAGGGTCTCAATGGTTTGAGATTAACCGGGAGCTTGCGGTTTC 1077
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 782 CATAAACCAATGGAGAAAAGGGTCTCAATGGTTTGAGGTTAACCGGGAGCTTGCGGTTTC 841
Query 1078 CATTGTCAAAGATACATTATATTACCCTAAATTCAAAGAGTTTTGTCAACCTGCTTGTTA 1137
||||||||||||||| || |||||||||||||||||| |||||||| |||||||||||||
Sbjct 842 CATTGTCAAAGATACCTTGTATTACCCTAAATTCAAACAGTTTTGTAAACCTGCTTGTTA 901
Query 1138 TGTGGACGAGCATTATTTCCCAACAATGTTGACAATTGAGAAACCGGCCGCCTTGGCTAA 1197
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 902 CGTGGACGAGCATTATTTCCCAACAATGTTGACAATTGAGAAACCGGCGGCCTTGGCCAA 961
Query 1198 CCGAAGTGTGACTTGGGTCGACTGGTCGAGAGGTGGTGCCCACCCAGCTACATTTGGAGC 1257
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 TCGAAGTGTGACTTGGGTCGACTGGTCGAGAGGTGGTGCCCACCCAGCTACATTTGGAGC 1021
Query 1258 ACAAGACATCAATGAGGAGTTCTTTGCCA-GAATTCTCAAAGGTGACAACTGCACTTACA 1316
||||||||||| ||||||||||||||| | | ||||||||||||| |||||||||||||
Sbjct 1022 ACAAGACATCAGTGAGGAGTTCTTTGC-ATGGGTTCTCAAAGGTGATAACTGCACTTACA 1080
Query 1317 ATGGTGGCTACACATCCATGTGTTATCTCTTTGCTAGAAAGTTTTCTCCTAGTGCTTTGG 1376
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1081 ATGGTGGCTACACATCCATGTGTTATCTCTTTGCTAGAAAGTTTTCTCCGAGTGCTTTAG 1140
Query 1377 AGCCTTTGGTTCAAATTGCACCCAA-ACTTTTGAGTTCTTGA 1417
|||||||| |||||||||| ||||| | || |||||| ||||
Sbjct 1141 AGCCTTTGATTCAAATTGCTCCCAAGA-TTCTGAGTTTTTGA 1181
> Ahg351610 jgi|Araly1|351610|fgenesh1_pg.C_scaffold_6002203
Length=1161
Score = 1729 bits (936), Expect = 0.0
Identities = 1085/1158 (94%), Gaps = 6/1158 (1%)
Strand=Plus/Plus
Query 263 AGTAGGGTTCTTCAGTTGGAAGAAGGTAAAGAGATTGTAGTTACAAGCAGCCGGACCGGG 322
||||||||| |||||||||||||||||||||| ||||||||||| || |||||||||||
Sbjct 7 AGTAGGGTTGTTCAGTTGGAAGAAGGTAAAGATATTGTAGTTACGGGCGGCCGGACCGGG 66
Query 323 CTTACTAAGGCGTTTCCTTACAAGTTGCTTCTCTTGCTAGGtttttttCTAGCTTTTACT 382
|| | |||||||||||||| |||||| |||||||||||||| ||||||||||||||||||
Sbjct 67 CTAAATAAGGCGTTTCCTTTCAAGTTACTTCTCTTGCTAGGATTTTTTCTAGCTTTTACT 126
Query 383 GTTGTTTTATTCTTCATTAGTGTATCCACCA-TCAAGTATTATGGAATCAATAGTGTAGT 441
|||||||||||||||||||||||||||| || |||||| |||||||||||||||||||||
Sbjct 127 GTTGTTTTATTCTTCATTAGTGTATCCA-CATTCAAGTTTTATGGAATCAATAGTGTAGT 185
Query 442 GACTTCAGTCACTTCTAGTTTTGTGCCTTGCCACGAGAAAATAAATGATCTTGATAAATG 501
|||||||||||| |||||||||||||||||||||||||||| ||| |||||| |||||||
Sbjct 186 GACTTCAGTCACGTCTAGTTTTGTGCCTTGCCACGAGAAAAGAAACGATCTTCATAAATG 245
Query 502 GATCAAACCTCTTGTGGTTCTCATGCATAATATGAGCGATGAAGAGCTTCTTTGGGGTGC 561
||| |||||| | ||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 246 GATTGAACCTCCTATGGTTCTCATGCATAATATGAGCGATGAAGAACTTCTTTGGCGTGC 305
Query 562 ATCTTTCATGCCTCGGAGGAAAGAGTACCCGTTTAATCGGGTCCCTAAAATCGCGTTTAT 621
|||||||||||| || |||||||| ||||||||| |||| || ||||||||||||||
Sbjct 306 GTCTTTCATGCCTAAGACGAAAGAGTTTCCGTTTAATAGGGTGCCGAAAATCGCGTTTAT 365
Query 622 GTTCTTGACAATGGGTCCTTTGCCTCTTGCACCGCTTTGGGAGAGGTTATTAAAGGGTCA 681
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 366 GTTCTTGACAATGGGTCCTTTGCCGCTTGCACCGCTTTGGGAAAGGTTATTAAAGGGTCA 425
Query 682 TGAGAAGCTTTACTCAGTTTATATCCATTCACCTGTATCTTCTTCAGCTAAGTTTCCAGC 741
|||||||| ||| |||||||| ||||||||||| |||||||||||||| ||||||| |||
Sbjct 426 TGAGAAGCATTATTCAGTTTACATCCATTCACCAGTATCTTCTTCAGCCAAGTTTCAAGC 485
Query 742 TTCCTCTGTTTTCTACCGTAGGCATATACCAAGTCAGGTTGCAGAATGGGGAAGAATGAC 801
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 TTCCTCTGTTTTCTACCGTAGGCATATACCAAGTCAGGTTGCAGAATGGGGAAGAATGAC 545
Query 802 AATGTGCGATGCAGAGAGGCGGCTTCTTGCAAATGCGCTACTCGATATCTCAAACGAATG 861
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 546 AATGTGCGATGCAGAGAGGCGGCTTCTTGCCAATGCGCTACTCGATATCTCAAACGAATG 605
Query 862 GTTTGTTCTCCTCTCCGAGTCATGCATTCCCCTATTCAACTTCACAACTATCTACACGTA 921
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 606 GTTTGTTCTCCTCTCCGAGTCATGCATTCCCCTCTTCAACTTCACAACTATCTACACTTA 665
Query 922 CATGACCAAATCAGAGCATAGCTTTATGGGTTCATTTGATGATCCTGGTGCATATGGCAG 981
||| ||||||||| |||| ||||||||||||||||||||||||||| || |||||||| |
Sbjct 666 CATAACCAAATCAAAGCACAGCTTTATGGGTTCATTTGATGATCCTAGTCCATATGGCCG 725
Query 982 AGGCCGCTACCACGGCAACATGGCCCCTGAAGTTTTCATAGACCAATGGAGAAAAGGGTC 1041
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 726 AGGCCGCTACCACGGCAACATGGCCCCTGAAGTTTCCATAGACCAATGGAGAAAAGGGTC 785
Query 1042 TCAATGGTTTGAGATTAACCGGGAGCTTGCGGTTTCCATTGTCAAAGATACATTATATTA 1101
||||||||||||| |||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 786 TCAATGGTTTGAGGTTAACCGGGAGCTTGCAGTTTCCATTGTCAAAGATACCTTGTATTA 845
Query 1102 CCCTAAATTCAAAGAGTTTTGTCAACCTGCTTGTTATGTGGACGAGCATTATTTCCCAAC 1161
||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 846 CCCTAAATTCAAACAGTTTTGTAAACCTGCTTGTTACGTGGACGAGCATTATTTCCCAAC 905
Query 1162 AATGTTGACAATTGAGAAACCGGCCGCCTTGGCTAACCGAAGTGTGACTTGGGTCGACTG 1221
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 906 AATGTTGACAATTGAGAAACCGGCGGCCTTGGCCAACCGAAGTGTGACTTGGGTCGACTG 965
Query 1222 GTCGAGAGGTGGTGCCCACCCAGCTACATTTGGAGCACAAGACATCAATGAGGAGTTCTT 1281
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 966 GTCGAGAGGTGGTGCCCACCCAGCTACATTTGGAGCACAAGACATCAGTGAGGAGTTCTT 1025
Query 1282 TGCCA-GAATTCTCAAAGGTGACAACTGCACTTACAATGGTGGCTACACATCCATGTGTT 1340
||| | | ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1026 TGC-ATGGGTTCTCAAAGGTGATAACTGCACTTACAATGGTGGCTACACATCCATGTGTT 1084
Query 1341 ATCTCTTTGCTAGAAAGTTTTCTCCTAGTGCTTTGGAGCCTTTGGTTCAAATTGCACCCA 1400
||||||||||||||||||||||||| |||||||| ||||||||| |||||||||| ||||
Sbjct 1085 ATCTCTTTGCTAGAAAGTTTTCTCCGAGTGCTTTAGAGCCTTTGATTCAAATTGCTCCCA 1144
Query 1401 A-ACTTTTGAGTTCTTGA 1417
| | || |||||| ||||
Sbjct 1145 AGA-TTCTGAGTTTTTGA 1161
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52983530795
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5