BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26010.1
Length=1115
Score E
Sequences producing significant alignments: (Bits) Value
Ahg326855 jgi|Araly1|326855|fgenesh1_pm.C_scaffold_6002075 1410 0.0
> Ahg326855 jgi|Araly1|326855|fgenesh1_pm.C_scaffold_6002075
Length=1032
Score = 1410 bits (763), Expect = 0.0
Identities = 950/1036 (92%), Gaps = 29/1036 (3%)
Strand=Plus/Plus
Query 1 ATGGGTCATTGCTTTTCGTTACCGTCTTC-TCAATCGGAGATTCATGAGGATAATGAGCA 59
|||||||||||||||||||| |||||||| || |||||||||||| ||||||||||||||
Sbjct 1 ATGGGTCATTGCTTTTCGTTGCCGTCTTCTTC-ATCGGAGATTCACGAGGATAATGAGCA 59
Query 60 CGGTGATGGAAATGTGGT-GTG-TT-ATGGAGAAGAGTTCGGTTTAGATCAAGACCTTCC 116
|||||||||||||| ||| ||| || ||||| |||||||||||||||||| ||||||||
Sbjct 60 CGGTGATGGAAATGCGGTAGTGTTTAATGGATTAGAGTTCGGTTTAGATCATGACCTTCC 119
Query 117 GGTTCATCGACTCGGTTCGGTCTGCTCCATACAAGGAACCAAAGTGCTTAACCAAGATCA 176
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 120 GGTTCATCGACTCGGTTCGGTCTGCTCTATACAAGGAACCAAAGTGCTTAACCAAGATCA 179
Query 177 TGCTGTTCTTTACCAGGGATATGGAACAAGAGATACAGAGCTATGTGGAGTGTTTGATGG 236
|||||||||||||| || |||||||||||| || ||||||||||||||||||||||||||
Sbjct 180 TGCTGTTCTTTACCTGGAATATGGAACAAGGGAAACAGAGCTATGTGGAGTGTTTGATGG 239
Query 237 ACACGGCAAAAATGGGCACATGGTGAGCAAAATGGTGAGGAATAGATTGCCATCGGTTTT 296
||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||| |
Sbjct 240 GCACGGTAAAAATGGGCACATGGTGAGCAAAATGGTGAGAAATAGACTGCCATCGGTTCT 299
Query 297 GTTAGCACTAAAGGAAGAGCTAAACCAAGAATCTAATGTTTGTGAAGAAGAAGCTTCA-A 355
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | | |
Sbjct 300 GTTAGCACTAAAGGAAGAGCAAAACCAAGAATCTAATGTTTGTGAAGAAGAAGC-TAACA 358
Query 356 AATGGGAAAAGGCTTGTTTTACTGCCTTTAGACTCATTGATAGAGAGCTTAATCTTCAAG 415
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 359 AATGGGAAAATGCTTGTTTTACTGCCTTTAGACTCATTGACAGAGAGCTTAATCTCCAAG 418
Query 416 TCTTTAATTGCTCTTTCAGTGGCTCCACTGGTGTGGTTGCCATAACTCAGGGAGATGATC 475
||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 419 TCTTTGACTGCTCTTTCAGTGGCTCCACTGGTGTTGTTGCCATAACTCAGGGAGATGATC 478
Query 476 TTGTGATAGCGAACCTTGGTGATTCAAGGGCAGTATTGGGGACAATGACTGAAGATGGTG 535
| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 479 TCGTGATAGCAAACCTCGGTGATTCAAGGGCAGTGTTGGGGACAATGACTGAAGATGGTG 538
Query 536 AGATCAAGGCAGTACAGTTAACATCAGACCTAACACCTGATGT---T-C-----CTA--G 584
|||||||||||||||||||||||||||||||||||||| |||| | | ||| |
Sbjct 539 AGATCAAGGCAGTACAGTTAACATCAGACCTAACACCTAATGTCCCTACGAGTTCTATCG 598
Query 585 T-G-A----A-GCAGAGAGGATCAGGATGTGCAAAGGTCGTGTTTTCGCAATGAAAACAG 637
| | | | ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 599 TTGCAGGTGAAGCAGAGAGGATCAGGATGTGCAAAGGTCGTGTTTTCGCAATGAAAGCAG 658
Query 638 AACCAAGCAGCCAAAGGGTGTGGTTACCAAACCAAAACATACCAGGATTAGCCATGTCAA 697
|||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 659 AACCGTGCAGCCAAAGGGTGTGGTTACCCAACCAAAACATACCAGGATTAGCCATGTCAA 718
Query 698 GAGCTTTTGGAGATTTCAGGCTCAAAGACCATGGTGTTATTGCGGTTCCTGAAATCTCTC 757
|||||||||||||||| |||||||||||||| || |||||||||||||| || |||||||
Sbjct 719 GAGCTTTTGGAGATTTTAGGCTCAAAGACCACGGCGTTATTGCGGTTCCAGAGATCTCTC 778
Query 758 AACACCGAATTACTTCTAAA-GACCAGTTCCTTGTACTCGCTACTGACGGGGTTTGGGAT 816
|||||||||| ||||| ||| |||| ||||||||||||||||||||| ||||||||||||
Sbjct 779 AACACCGAATAACTTC-AAACGACCGGTTCCTTGTACTCGCTACTGATGGGGTTTGGGAT 837
Query 817 ATGCTTAGCAATGATGAAGTTGTATCGCTTATATGGAGTTCCGGGAAAAA-GCAAGCTTC 875
||||| ||||||||||||||||||||||| ||||||||||| |||||||| |||||||
Sbjct 838 ATGCTAAGCAATGATGAAGTTGTATCGCTGATATGGAGTTC-GGGAAAAAAGCAAGCTGA 896
Query 876 GGCCGCTAAAATGGTGGCGGAGGCGGCTGAAGCTGCATGGAAGAAAAGGCTTAAGTATAC 935
|||||||||| ||||||||||||| |||||||||||||||||||||| |||||| | |||
Sbjct 897 GGCCGCTAAATTGGTGGCGGAGGCAGCTGAAGCTGCATGGAAGAAAAAGCTTAAATCTAC 956
Query 936 GAAGGTAGATGATATTACAGTAATATGTCTTTTCTTACAGAACAAGGAACAACCAAGTTG 995
||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 GAAAATTGACGATATTACAGTAATATGTCTTTTCTTACAGAACAAGGAACAACCAAGTTG 1016
Query 996 AACTATGGACATTTGA 1011
|||||| ||| ||||
Sbjct 1017 TACTATGCACACTTGA 1032
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41553979530
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5