BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26030.1
Length=2042
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489449 jgi|Araly1|489449|fgenesh2_kg.6__2583__AT5G26030.1 2630 0.0
> Ahg489449 jgi|Araly1|489449|fgenesh2_kg.6__2583__AT5G26030.1
Length=1957
Score = 2630 bits (1424), Expect = 0.0
Identities = 1700/1824 (93%), Gaps = 55/1824 (3%)
Strand=Plus/Plus
Query 1 ACACGCCTAACCTGCTTCAATGGAAAAG----TCATACATTTACCTAACCAGACCTTCTT 56
|||| ||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 1 ACACACCTAACCTGCTTCAATGGAAAAGTCTCTCATATATTTACCTAACCAGACCTTCTT 60
Query 57 CGCATCTTCGTCTTCTTCCTTCGTGATCTCTCAAATTCTCTCCCTTTTAAAGTCCTAAAT 116
|||||||||| ||||||||| |||||||||||||||||| || ||||||||||| |||
Sbjct 61 CGCATCTTCG---TCTTCCTTCATGATCTCTCAAATTCTCTTCC-TTTAAAGTCCTTAAT 116
Query 117 CAAAACCCTAAACCCATAAATCCAATCCCTCCATTCGAATTCTTCATtctctctctctct 176
||||||||||||||||||||||||| |||||| |||| | | |||| || |||||
Sbjct 117 CAAAACCCTAAACCCATAAATCCAACCCCTCCTTTCG-A----T--TTCT-TCAATCTCT 168
Query 177 ctctctcACAATTACTGATCGGTTCTGAAATTTGTAGCTATGCAGGCAACGGCTTTATCA 236
|||||||| |||| | | | | || | || | | | ||||| || ||||||
Sbjct 169 CTCTCTCA-AATT-C-G-T-AG--CT---A--TG--G--A---A-GCAACAGCGTTATCA 208
Query 237 TCTGGGTTCAATCCTCTAACGAAACGTAAAGATCACAGATTTCCCAGGTCATGCT-CTCA 295
|||||||| |||||||||| ||| |||||||||||||||||||||||||||| | ||||
Sbjct 209 TCTGGGTTTAATCCTCTAATGAAGCGTAAAGATCACAGATTTCCCAGGTCAT-ATGCTCA 267
Query 296 GAGAAATTCTCTGTCTTTGATTCAATGCGATATAAAAGAGAGATCTTTCGGA---GA-GT 351
|||||| |||||||||||||||| ||||||| |||||||||||||||| ||| |
Sbjct 268 GAGAAAGTCTCTGTCTTTGATTCGATGCGATTTAAAAGAGAGATCTTTTGGACTCAACAA 327
Query 352 C--TA-TGACGATCACGAATCGTGGA-TTGAGTTTTAAGACGAATGTGTTTGAGCAAGCT 407
| || || |||||||| ||||| || ||||| |||||||||||||||||||||||||||
Sbjct 328 CAATATTG-CGATCACGCATCGT-GATTTGAGATTTAAGACGAATGTGTTTGAGCAAGCT 385
Query 408 CGTTCTGTGACTGGAGACTGTTCTTATGATGAAACTTCAGCTAAAGCACGTTCTCATGTT 467
| |||||||||||||||||||||||||||||| || ||||||| ||||||||| ||
Sbjct 386 CATTCTGTGACTGGAGACTGTTCTTATGATGAGGCTAGAGCTAAAACACGTTCTC---TT 442
Query 468 GTTGCAGAAGATAAGATTGGTGTCTTGCTTTTGAATTTAGGTGGTCCTGAAACTCTTAAC 527
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 443 GTTGCAGAAGATAAGATTGGTGTCTTGCTTTTGAATTTAGGTGGTCCTGAAACTCTTAAT 502
Query 528 GATGTTCAACCTTTCTTGTATAATCTCTTTGCTGATCCGGATATTATAAGGCTTCCTAGA 587
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 503 GATGTTCAACCTTTCTTGTATAATCTCTTTGCTGATCCGGATATTATACGGCTTCCTAGA 562
Query 588 CCATTTCAGTTTCTTCAAGGGACTATAGCTAAGTTTATATCTGTTGTTCGTGCTCCGAAA 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 563 CCATTTCAGTTTCTTCAAGGGACTATAGCTAAGTTTATATCTGTTGTTCGTGCTCCGAAA 622
Query 648 TCTAAAGAAGGGTATGCTGCTATTGGTGGTGGCTCTCCTTTGCGTAAAATAACTGATGAG 707
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 623 TCGAAAGAAGGGTATGCTGCTATTGGTGGTGGCTCTCCTTTGCGTAAAATAACTGATGAG 682
Query 708 CAAGCGGATGCTATTAAGATGTCTTTGCAAGCGAAGAACATTGCTGCTAATGTCTATGTT 767
||||| ||||||||| |||| ||||||||||||||||| |||||||||||||||||||
Sbjct 683 CAAGCAGATGCTATTCGGATGGCTTTGCAAGCGAAGAACGTTGCTGCTAATGTCTATGTC 742
Query 768 GGTATGCGGTATTGGTATCCGTTCACTGAGGAGGCTGTTCAGCAGATAAAGAAGGACAAA 827
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 743 GGTATGCGGTATTGGTATCCGTTCACTGAGGAGGCTGTTCAGCAGATAAAGAAGGACAAA 802
Query 828 ATTACTAGACTTGTTGTACTGCCATTGTATCCTCAGTATTCTATCTCTACAACGGGTTCA 887
||||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 803 ATTACAAGACTTGTTGTACTGCCATTGTACCCTCAGTATTCTATCTCCACGACGGGTTCA 862
Query 888 AGCATACGCGTTCTCCAAGATTTATTCAGGAAAGATCCGTACCTAGCTGGAGTGCCGGTA 947
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 863 AGCATCCGCGTTCTCCAAGACTTATTCAGGAAAGATCCGTACCTAGCTGGAGTGCCGGTA 922
Query 948 GCTATTATAAAGTCCTGGTACCAAAGGCGAGGCTATGTCAATTCTATGGCTGACCTCATT 1007
||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 923 GCTATTATACAGTCCTGGTACCAAAGGCGAGGCTATGTCAATTCCATGGCCGACCTCATT 982
Query 1008 GAGAAGGAGCTTCAAACTTTCTCTGATCCTAAGGAGGTTATGATATTCTTCAGTGCCCAT 1067
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 983 GAGAAGGAGCTTCAAACTTTCTCTGATCCTAACGAGGTTATGATATTCTTCAGTGCCCAT 1042
Query 1068 GGTGTTCCGGTCAGCTACGTAGAGAATGCTGGAGATCCGTACCAGAAGCAGATGGAAGAG 1127
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1043 GGTGTTCCAGTCAGCTATGTAGAGAATGCTGGAGATCCGTACCAGAAGCAGATGGAAGAG 1102
Query 1128 TGTATTGACTTGATAATGGAAGAGCTAAAAGCCAGAGGGGTTCTTAACGACCATAAATTG 1187
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 TGTATTGACTTGATAATGGAAGAGCTAAAAGCCAGAGGGGTTCTTAACGACCATAAATTG 1162
Query 1188 GCATACCAGAGTCGTGTTGGCCCTGTTCAATGGCTGAAGCCATACACCGATGAGGTTCTT 1247
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1163 GCATACCAGAGTCGTGTTGGGCCTGTTCAATGGCTGAAGCCATACACCGATGAGGTTCTT 1222
Query 1248 GTCGACCTTGGTAAGAGTGGTGTTAAGAGTCTACTAGCCGTTCCAGTCAGTTTCGTGAGT 1307
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1223 GTCGACCTTGGTAAGAGTGGTGTTAAGAGTCTACTAGCCGTTCCAGTCAGTTTCGTGAGT 1282
Query 1308 GAGCACATTGAGACACTTGAGGAGATAGACATGGAGTATAGGGAATTAGCTCTTGAGTCA 1367
|||||||||||||||||||| |||||||||||||||||||||||| ||||||| || |||
Sbjct 1283 GAGCACATTGAGACACTTGAAGAGATAGACATGGAGTATAGGGAACTAGCTCTGGAATCA 1342
Query 1368 GGGGTAGAGAACTGGGGACGGGTACCCGCGCTAGGTCTCACACCATCCTTCATCACCGAC 1427
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1343 GGGGTAGAGAACTGGGGACGGGTACCAGCACTAGGTCTCACACCATCCTTCATCACCGAC 1402
Query 1428 TTAGCTGATGCAGTGATAGAATCACTTCCTTCAGCAGAAGCAATGTCAAACCCAAATGCA 1487
||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1403 TTAGCTGATGCAGTGATAGAATCGCTTCCTTCAGCAGAAGCAATGTCGAACCCAAATGCA 1462
Query 1488 GTGGTTGACTCAGAAGATAGCGAGTCGTCAGATGCTTTCAGTTACATTGTCAAGATGTTC 1547
|| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1463 GTACT---CTCAGAAGATAGCGAGTCGTCAGATGCTTTCAGTTACATTGTCAAGATGTTC 1519
Query 1548 TTCGGTTCGATTCTGGCTTTCGTCCTACTTCTCTCCCCAAAGATGTTCCATGCGTTCCGG 1607
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1520 TTCGGTTCAATTCTGGCTTTCGTCCTACTTCTCTCCCCAAAGATGTTCCATGCTTTCCGG 1579
Query 1608 AACCTATAGAATCTCGTTGGTTTTGTGTTAAGTCTTTTCTTGGAGAAATGTCTTGGTTAA 1667
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 1580 AACCTATAGAATCTCGTTGGTTTTGTGTTA-GTCTTTTCTTGGAGAAATGTCTTGGTCAA 1638
Query 1668 ATTCAATATATATAGTCCAATCTATTGAAGTACTAGTACACCAGCTCTAATAAGCTGATG 1727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1639 ATTCAATATATATAGTCCAATCTATTGAAGTACTAGTACACCAGCTCTAATAAGCTGATG 1698
Query 1728 TGGGTAAGTAGTTCAATAGATTGGACTATGTATATTAAATTTGACTAAGAGATAAACTAG 1787
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1699 TAGGTAAGTAGTTCAATAGATTGGACTATATATATTAAATTTGACTAAGAGATAAACTAG 1758
Query 1788 AGAATGGGAATAAAGAATGAGAAA 1811
|||||| |||||||||||||||||
Sbjct 1759 AGAATGAGAATAAAGAATGAGAAA 1782
Score = 248 bits (134), Expect = 1e-64
Identities = 150/157 (96%), Gaps = 4/157 (3%)
Strand=Plus/Plus
Query 1858 AAGATGCATTTAGCTATAAACATAGTGGCTACGTTCCTCTTAGAGATGAGGAGAGAATTA 1917
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1795 AAGATGCATTTAGCTATAAACATAGT-GCTACGTTCCTCTTAGAGATGAGGAGAGAATTA 1853
Query 1918 TATTCTATTATTATTTGGTTTCTTTTCTTCGTTTTTGTATGGTTTCAATACTT---AATT 1974
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||
Sbjct 1854 TATTCTATTATTATTTGGTTTCTTTTTTTCGTTTTTGTTTGGTTTCAGTACTTCTTAATT 1913
Query 1975 GTCAAAAGTATCCTATAATTTTGTTGTTCATAGTGTT 2011
|||||||||||||||||||||||||||||||||||||
Sbjct 1914 GTCAAAAGTATCCTATAATTTTGTTGTTCATAGTGTT 1950
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76789933920
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5