BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26040.2
Length=1366
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489451 jgi|Araly1|489451|fgenesh2_kg.6__2585__AT5G26040.2 1927 0.0
> Ahg489451 jgi|Araly1|489451|fgenesh2_kg.6__2585__AT5G26040.2
Length=1277
Score = 1927 bits (1043), Expect = 0.0
Identities = 1149/1201 (96%), Gaps = 4/1201 (0%)
Strand=Plus/Plus
Query 5 aaaaaaaTATCTCACCGCTTCAGACCAAAAACT-A-ATGACACATACCCGAGTCATCTCG 62
|||||||||||||||||||||||||||||| || | |||||| |||||||||||||||||
Sbjct 2 AAAAAAATATCTCACCGCTTCAGACCAAAACCTCATATGACAGATACCCGAGTCATCTCG 61
Query 63 ACCTGGACCGAGTTAACTCGCGACTTAGCTATTTACTTGCTCTTCACGTTTTTCGCAATC 122
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 62 ACCTGGACCGAGTTAACTCGCGACTCAGCTATTTACTTGCTCTTCACGTTTTTCGCCATC 121
Query 123 AAAGTCTTCAAATTTCTCTTCTCCTGTAATCGAACCTCTGAAATATCATCGTTTTCGATG 182
||||||| || ||||||||||| |||||||||||| |||||| | |||||||||||||||
Sbjct 122 AAAGTCTACATATTTCTCTTCTGCTGTAATCGAACATCTGAATTGTCATCGTTTTCGATG 181
Query 183 GCGACTCATCCCGAAGCTCTCCGACGAGAGCGAATTCTCAACAGTAAACTCTACTTCGAC 242
||||||||||||||||||||||| ||||| |||||| ||||||| |||||||||||||||
Sbjct 182 GCGACTCATCCCGAAGCTCTCCGGCGAGAACGAATTATCAACAGCAAACTCTACTTCGAC 241
Query 243 GTTCCTCTTTCAAAGGTTTCGATTATCTATTCATCGTCTTATGATATCTCGTTCATGGGT 302
|||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||
Sbjct 242 GTTCCTCTTTCAAAGGTTTCGATTATCTATTCATCGGCGTATGATATTTCGTTCATGGGT 301
Query 303 ATTGAGAAATTGCACCCATTTGATTCTTCCAAGTGGGGTAGAGTTTGCAAGTTCCTTGTT 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 ATTGAGAAATTGCACCCATTTGATTCTTCCAAGTGGGGTAGAGTTTGCAAGTTCCTTGTT 361
Query 363 TCAGATGGGTTTCTGGAGGAGAAAGCAATTGTTGAGCCTCTTGAAGCTTCAAAGATTGAT 422
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 362 TCAGATGGGTTTTTGGAGGAGAAAGCAATTATTGAGCCTCTTGAAGCTTCAAAGAATGAT 421
Query 423 CTTTTAGTGGTACATTCTGAGAACTACTTAAACAGCTTGAAAAGCAGTGCCACTGTCGCT 482
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 422 CTTTTAGTGGTACATTCTGAGAACTACTTAAACAGCTTGAAAAGTAGTGCCACTGTTGCT 481
Query 483 AGGATCACCGAGGTTGCACCAGTTGCGTTTTTTCCGAATTTTCTTGTGCAGCAGAAAGTT 542
||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 482 AGGATAACCGAGGTTCCACCAGTTGCCTTTTTTCCGAATTTTCTTGTGCAGCAGAAAGTT 541
Query 543 CTTTACCCATTCCGAAAGCAGGTTGGTGGGACGATTCTGGCAGCTAAACTTGCAACAGAA 602
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 542 CTTTACCCATTCCGAAAGCAGGTTGGTGGGACGATTCTGGCAGCTAAACTCGCAACAGAA 601
Query 603 CGTGGATGGGCGATAAACATTGGAGGAGGTTTTCATCATTGTACTGCTGAAAGAGGAGGC 662
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 602 CGTGGATGGGCAATAAACATTGGAGGAGGTTTTCATCATTGTACTGCGGAAAGAGGAGGC 661
Query 663 GGGTTTTGTGCTTTCGCTGATATTTCTCTCTGTATTCACTTTGCGTTTCTTCGTCTGAGA 722
|| ||||||||||| |||||||||||||| |||||||||||||| |||||||||||| ||
Sbjct 662 GGATTTTGTGCTTTTGCTGATATTTCTCTTTGTATTCACTTTGCATTTCTTCGTCTGCGA 721
Query 723 ATCTCGAGGGTTATGATAATAGATCTTGATGCTCATCAAGGGAATGGCCATGAAACAGAT 782
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 722 ATCTCCAGGGTTATGATAATAGATCTTGATGCTCATCAAGGGAATGGCCATGAAACAGAT 781
Query 783 CTCGGCGATGACAACCGTGTTTACATTTTGGATATGTACAATCCCGAGATATACCCTTTC 842
||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||
Sbjct 782 CTCGGCGATGACAACCGCGTTTACATTCTGGATATGTACAATCCCGAGATATACCCTTTC 841
Query 843 GATTATAGAGCTAGGAGATTTATCGATCAGAA-AGTTGAGGTCATGAGCGGGACGACCAC 901
|||||||||||||||||||||||||| ||||| | |||||||| |||||||||| |||||
Sbjct 842 GATTATAGAGCTAGGAGATTTATCGACCAGAACA-TTGAGGTCGTGAGCGGGACCACCAC 900
Query 902 CGATGAGTATTTGAGGAAACTAGATGAAGCCCTTGAGGTTGCTTCGCGAAACTTCCAACC 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CGATGAGTATTTGAGGAAACTAGATGAAGCCCTTGAGGTTGCTTCGCGAAACTTCCAACC 960
Query 962 GGAGTTGGTAATTTACAATGCTGGCACAGACATATTAGATGGTGACCCTCTGGGACTTCT 1021
|||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 961 GGAGTTGGTAATTTACAATGCTGGGACAGATATATTAGACGGTGACCCTCTGGGACTTCT 1020
Query 1022 AAAGATAAGCCCCGATGGCATAACAAGTAGAGACGAGAAAGTCTTCAGATTTGCAAGGGA 1081
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1021 AAAGATAAGCCCCGATGGCATAACGAGTAGAGACGAGAAAGTCTTCAGATTTGCAAGGGA 1080
Query 1082 GAAAAATATTCCTCTTGTGATGCTAACCTCAGGCGGGTACATGAAGTCAAGCGCTAGAGT 1141
||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct 1081 GAAAAATATTCCTCTTGTGATGCTAACTTCAGGTGGGTACATGAAGTCAAGCGCCAGAGT 1140
Query 1142 TATTGCGGATTCCATTGAGAATCTCTCACGGCAAGGGTTGATCCAGACACGACCGGAATA 1201
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 1141 TATTGCGGATTCCATTGAGAATCTCTCACGTCAAGGGTTAATCCAGACACGACCGGAATA 1200
Query 1202 A 1202
|
Sbjct 1201 A 1201
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51122831697
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5