BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G26050.1

Length=922
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942188 jgi|Araly1|942188|scaffold_602732.1                        760    0.0  


> Ahg942188 jgi|Araly1|942188|scaffold_602732.1
Length=523

 Score =  760 bits (411),  Expect = 0.0
 Identities = 482/515 (94%), Gaps = 9/515 (2%)
 Strand=Plus/Plus

Query  207  GCGATCATTTGATCGAAATGGGAAGAGACCTCGGCTGGTGCTTCTTCGTGGCGACGGTT-  265
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| 
Sbjct  4    GCGATCATTTGATCGAAATGGGGAGAGACCTCGGCTGGTGCTTCTTCGTGGCGACGGTTG  63

Query  266  T--TGTTAGCAGCGGTGTTGTTACCCGCACCAACCATAGCGGGTCGACTAGAGCTAAAGA  323
            |  || |||||||  | ||||||||| ||| |||||| |||||||| |||||||||||||
Sbjct  64   TGGTGGTAGCAGC--T-TTGTTACCCACACTAACCATGGCGGGTCGTCTAGAGCTAAAGA  120

Query  324  ATGAAATCTCGGGGGTCGCTAGTGTCCGTAAAGCGAAGCTAGCCGTGCGGTGCTGGTCAA  383
            | |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  ACGAAATCTCAGGGGTCGCTAGTGTCCGTAAAGCGAAGCTAGCCGTGCGGTGCTGGTCAA  180

Query  384  ACGAGGATGACCTCGGGTGGAATATGCTAAAGCCGAAGCAATCGCGGA-TATGGAAGTTC  442
            ||||||||||||| |||||| ||||| ||||||| |||||||| | || |||||| ||||
Sbjct  181  ACGAGGATGACCTAGGGTGGGATATGATAAAGCCAAAGCAATCAC-GAGTATGGACGTTC  239

Query  443  ACGACAATGAACATGTGGCCCTTTCAGAAAACCGAGTTCCGTTGCCAGTTTCGTAGCGGG  502
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  240  ACGACAATGAACATGTGGCCCTTTCAGAAAACTGAGTTCCGTTGCCAGTTTCGTAGCGGG  299

Query  503  TTTGGAACCACGAACGAAGACGTGGTGACAGTGTTTTCTGTCAAGGACGGGTTTCGAAAG  562
            ||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||||
Sbjct  300  TTTGGAACCACGAACGAAGACGTTGTGACGGTGTTTTCTGTCAAGGGCGGGTTTCGAAAG  359

Query  563  CAATGCGGGGTGGGAGGGGACGAGTGCTTTTGGGTAGCGAAGAGAGATGGGTTCTATCTA  622
             |||| ||||||||||||||||||||||||||||||| |||||||||||| || ||||||
Sbjct  360  GAATGTGGGGTGGGAGGGGACGAGTGCTTTTGGGTAGGGAAGAGAGATGGATTATATCTA  419

Query  623  AGAAGGATTGTAAAAGATGGAGGAGGGGATAGTCGCAAGAAATATGTTGATGTTCTCAAA  682
            |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  420  AGAAGGATCGTAAAAGATGGAGGAGGGGATAGTCGCAAGAAATATGTTGATGTTCTCAAA  479

Query  683  AGCAAATGGGTTTGGAAATGGTGAAATCTTCaatt  717
            ||||||||||||||||||||||||| |||||||||
Sbjct  480  AGCAAATGGGTTTGGAAATGGTGAA-TCTTCAATT  513



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 34196256549


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5