BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G26060.1 Length=678 Score E Sequences producing significant alignments: (Bits) Value Ahg942189 jgi|Araly1|942189|scaffold_602733.1 710 0.0 > Ahg942189 jgi|Araly1|942189|scaffold_602733.1 Length=505 Score = 710 bits (384), Expect = 0.0 Identities = 460/497 (93%), Gaps = 4/497 (1%) Strand=Plus/Plus Query 28 ACAAAATCAGAATTACACAAATGGGAACTAATAAGATTCCCAAAACCCTCAACGGGAACC 87 ||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| Sbjct 1 ACATAATCAGAATTACACATATGGGAACTAACAAGATTCCCAAAACCCTCAACGGGAACT 60 Query 88 TTGTTCTTATACTTATCATCACCATAATGATGGTGACTCACTCCCATGGATTTCAACTGG 147 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 61 TTGTTCTTATACTTATCATCACCATAATGATGGTGACTCACTCCCATGGATTTCGACTGG 120 Query 148 AGATCAGGAACGAGCTATCAGGAAGGTACAGGAAGCTTGTGTACAAATGCTGGTCCCGCG 207 |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 121 AGATCAAGAACGAGCTATCGGGAAGGTACAGGAAGCTTGTGTACAAATGCTGGTCCCGCG 180 Query 208 ATAACGATTTCGGGTGGCGACAGAACTGGCCAGGCCAGTACAAGGACTGGTCCTTCGCCA 267 |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 181 ATAATGATTTCGGGTGGCGACAGAACTGGCCAGGTCAGTACAAGGACTGGTCCTTCGCCA 240 Query 268 TTTCACTATTCCACACCTACTTCTACTGCCACTTCCGTACAGCGTATGGACGCGTGGATA 327 |||| ||||||||||||| |||| |||||||||||||||||| ||||||||||||||||| Sbjct 241 TTTCGCTATTCCACACCTTCTTCCACTGCCACTTCCGTACAGGGTATGGACGCGTGGATA 300 Query 328 AGCAGCTAGTAGCGTCATGGGAGTTAAAACAA-GAGTGTGGGGACAGGAGAAAATGCACT 386 || ||||||| | ||| ||||| ||||| | | |||||||||||||| ||||||||| Sbjct 301 AGAAGCTAGTTGTGTCGTGGGACCTAAAAGACCG-GTGTGGGGACAGGACCAAATGCACT 359 Query 387 TGGGTCGTTAAGAAGGACGGACTCTACTTGAGACA-ATGGAAGACCAAATTTTTTAGTAA 445 ||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||||| Sbjct 360 TGGGTCGTTAAGAAGGACGGACTCTACTTGAGA-AGATGGAAGACCATATTTTTTAGTAA 418 Query 446 CAAGTATGGTAACGAAAGGTGGAATGTGTATATTGAACATGATGTCCTCAAGAAAAGTTG 505 |||||||||||| ||||||||||||| |||||| ||||||||||||| |||| |||| Sbjct 419 CAAGTATGGTAATGAAAGGTGGAATGACTATATTCCACATGATGTCCTCGAGAACCGTTG 478 Query 506 GAGCTAATTAACAATTT 522 ||||||||||| ||||| Sbjct 479 GAGCTAATTAATAATTT 495 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24894264801 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5