BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G26060.1

Length=678
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg942189 jgi|Araly1|942189|scaffold_602733.1                        710    0.0  


> Ahg942189 jgi|Araly1|942189|scaffold_602733.1
Length=505

 Score =  710 bits (384),  Expect = 0.0
 Identities = 460/497 (93%), Gaps = 4/497 (1%)
 Strand=Plus/Plus

Query  28   ACAAAATCAGAATTACACAAATGGGAACTAATAAGATTCCCAAAACCCTCAACGGGAACC  87
            ||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| 
Sbjct  1    ACATAATCAGAATTACACATATGGGAACTAACAAGATTCCCAAAACCCTCAACGGGAACT  60

Query  88   TTGTTCTTATACTTATCATCACCATAATGATGGTGACTCACTCCCATGGATTTCAACTGG  147
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct  61   TTGTTCTTATACTTATCATCACCATAATGATGGTGACTCACTCCCATGGATTTCGACTGG  120

Query  148  AGATCAGGAACGAGCTATCAGGAAGGTACAGGAAGCTTGTGTACAAATGCTGGTCCCGCG  207
            |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  121  AGATCAAGAACGAGCTATCGGGAAGGTACAGGAAGCTTGTGTACAAATGCTGGTCCCGCG  180

Query  208  ATAACGATTTCGGGTGGCGACAGAACTGGCCAGGCCAGTACAAGGACTGGTCCTTCGCCA  267
            |||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  181  ATAATGATTTCGGGTGGCGACAGAACTGGCCAGGTCAGTACAAGGACTGGTCCTTCGCCA  240

Query  268  TTTCACTATTCCACACCTACTTCTACTGCCACTTCCGTACAGCGTATGGACGCGTGGATA  327
            |||| ||||||||||||| |||| |||||||||||||||||| |||||||||||||||||
Sbjct  241  TTTCGCTATTCCACACCTTCTTCCACTGCCACTTCCGTACAGGGTATGGACGCGTGGATA  300

Query  328  AGCAGCTAGTAGCGTCATGGGAGTTAAAACAA-GAGTGTGGGGACAGGAGAAAATGCACT  386
            || ||||||| | ||| |||||  ||||| |  | ||||||||||||||  |||||||||
Sbjct  301  AGAAGCTAGTTGTGTCGTGGGACCTAAAAGACCG-GTGTGGGGACAGGACCAAATGCACT  359

Query  387  TGGGTCGTTAAGAAGGACGGACTCTACTTGAGACA-ATGGAAGACCAAATTTTTTAGTAA  445
            ||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct  360  TGGGTCGTTAAGAAGGACGGACTCTACTTGAGA-AGATGGAAGACCATATTTTTTAGTAA  418

Query  446  CAAGTATGGTAACGAAAGGTGGAATGTGTATATTGAACATGATGTCCTCAAGAAAAGTTG  505
            |||||||||||| |||||||||||||  ||||||  ||||||||||||| ||||  ||||
Sbjct  419  CAAGTATGGTAATGAAAGGTGGAATGACTATATTCCACATGATGTCCTCGAGAACCGTTG  478

Query  506  GAGCTAATTAACAATTT  522
            ||||||||||| |||||
Sbjct  479  GAGCTAATTAATAATTT  495



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24894264801


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5