BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G26070.1

Length=309
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg489453 jgi|Araly1|489453|fgenesh2_kg.6__2587__AT5G26070.1         494    2e-139
  Ahg326861 jgi|Araly1|326861|fgenesh1_pm.C_scaffold_6002081           207    3e-53 


> Ahg489453 jgi|Araly1|489453|fgenesh2_kg.6__2587__AT5G26070.1
Length=309

 Score =  494 bits (267),  Expect = 2e-139
 Identities = 296/310 (95%), Gaps = 2/310 (1%)
 Strand=Plus/Plus

Query  1    ATGGTGTCTCTAGGACTTTCCTTCACTCTAGTTTTTCTCTTGGCAATCTTATTCACAGTT  60
            ||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||||
Sbjct  1    ATGGTGTCTCTAGGACTTTCCATCACCCTAGTTTTTCTCTTGGCAATCATATTCACAGTT  60

Query  61   GCTGAAGCTAACAACAACAGAAAACTCTTGA-AAACTCCCACTAACTACCAACCACTATA  119
            ||||||||||| ||||||||||||||| | |  || ||||||||||||||||||||||||
Sbjct  61   GCTGAAGCTAAAAACAACAGAAAACTCCT-ACCAAGTCCCACTAACTACCAACCACTATA  119

Query  120  TTCTCCTTCTCCATCGCCTTATCGGTCTCCAGTTACTCTTCCTCCTCCTCCTCCACATCC  179
            || |||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||
Sbjct  120  TTATCCTTCTCCATCGCCTTATCGGCCTCCAGTTACTCTTTCTCCTCCTCCTCCACCTCC  179

Query  180  GGCTTATTCTCGTCCGGTTGCTCTTCCTCCCACACTTCCGATTCCTCATCCTTCTCCTCA  239
            ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  180  GGCTTATTCTCGTCCGGTTGCTCTTCCTCCCACACTTCCAATTCCTCATCCTTCTCCTCA  239

Query  240  TGCTGAAAGATTCTACTACAGGCAATCTCCTCCACCTCCCTCCGGAAAACCTTGGTGGTG  299
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  TGCTGAAAGATTCTACTACAGGCAATCTCCTCCACCTCCCTCCGGAAAACCTTGGTGGTG  299

Query  300  GTTGTTGTAG  309
            ||||||||||
Sbjct  300  GTTGTTGTAG  309


> Ahg326861 jgi|Araly1|326861|fgenesh1_pm.C_scaffold_6002081
Length=444

 Score =  207 bits (112),  Expect = 3e-53
 Identities = 159/180 (88%), Gaps = 9/180 (5%)
 Strand=Plus/Plus

Query  1    ATGGTGTCTCTAGGACTTTCCTTCACTCTAGTTTTTCTCTTGGCAATCTTATTCACAGTT  60
            |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct  1    ATGGTGTCTCTAGGACTTTCCTACACCCTAGTTTTTCTCTTGGCAATCTTATTCACAGTT  60

Query  61   GCTGAAGCTAACAACAACAGAAAACTCTTGAAAACTCCCACTAACTACCAACCACTATAT  120
            | ||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||
Sbjct  61   GGTGAAGCTAACAACAACAGAAAACTCCTGCAAACTCCCACTAACTACCAACCGCTATAT  120

Query  121  TCTCCTTCTCCATCGCC---TT-AT-CGGTC-TCCAGTTACTCTTCCTCCTCCTCCTCCA  174
            |||||| |||| || ||   || || |  || ||| ||| ||||| ||||||| ||||||
Sbjct  121  TCTCCTCCTCC-TCCCCCGGTTTATTC--TCGTCCGGTTGCTCTTTCTCCTCCACCTCCA  177


 Score =  108 bits (58),  Expect = 3e-23
 Identities = 77/86 (90%), Gaps = 2/86 (2%)
 Strand=Plus/Plus

Query  224  CTCATCCTTCTCCTCATGCTGAAAG-ATTCTACTACAGGCAATCTCCTCCACCTCCCTCC  282
            |||| ||||||||| | |||  |||  |||||||||||||||||||||||||||||||||
Sbjct  359  CTCAACCTTCTCCTAAAGCT-CAAGCTTTCTACTACAGGCAATCTCCTCCACCTCCCTCC  417

Query  283  GGAAAACCTTGGTGGTGGTTGTTGTA  308
            || ||||| |||||||||||||||||
Sbjct  418  GGGAAACCGTGGTGGTGGTTGTTGTA  443



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10874342865


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5