BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G26080.1

Length=426
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg326861 jgi|Araly1|326861|fgenesh1_pm.C_scaffold_6002081           359    1e-98


> Ahg326861 jgi|Araly1|326861|fgenesh1_pm.C_scaffold_6002081
Length=444

 Score =  359 bits (194),  Expect = 1e-98
 Identities = 370/450 (82%), Gaps = 32/450 (7%)
 Strand=Plus/Plus

Query  1    ATGGTGTCTCTAGGAGTTTTCTACACCCTAGTTTTTCTCTTGGCAATCTTATTCACAGTT  60
            ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGGTGTCTCTAGGACTTTCCTACACCCTAGTTTTTCTCTTGGCAATCTTATTCACAGTT  60

Query  61   TCTGAAGCTAACAGCAACAGAAAACTCCTCCAAACTACCACTAATTACCAACCGATATAT  120
              ||||||||||| ||||||||||||||| |||||| ||||||| ||||||||| |||||
Sbjct  61   GGTGAAGCTAACAACAACAGAAAACTCCTGCAAACTCCCACTAACTACCAACCGCTATAT  120

Query  121  TCTCCTCCTCCACCGCC--TT-AT-CGATC-TCCAGTTACTATTCCTCCTCCTCCCCCGG  175
            ||||||||||| || ||  || || |  || ||| ||| || || ||||||| || ||  
Sbjct  121  TCTCCTCCTCCTCCCCCGGTTTATTC--TCGTCCGGTTGCTCTTTCTCCTCCACCTCCAA  178

Query  176  TTTATTCTCGTCCGGTTGCTTTtcc--tcc-tccacctccaatatattctcctcctcctc  232
            | ||||||| |||  |  ||  |||  ||  |||||||||| ||||||||||||||||| 
Sbjct  179  TATATTCTCCTCC--TC-CTACTCCGATCTATCCACCTCCAGTATATTCTCCTCCTCCTA  235

Query  233  ctccgatctatccacctccaatatattctcctcctcctcctccaatctatccacctccaa  292
            |||||||||||||||||||| ||||||||||||||||| |||| |||||| |||||||| 
Sbjct  236  CTCCGATCTATCCACCTCCAGTATATTCTCCTCCTCCTACTCCGATCTATTCACCTCCAG  295

Query  293  tatattctcctcc-tcctactccaatttctccacctccaaAAGTTCATCATCCTGCGCCT  351
            ||||||||||||| || |||||| || | |||||||||    |  ||||||||| | |||
Sbjct  296  TATATTCTCCTCCCTC-TACTCCGATCTATCCACCTCCGGTTGCCCATCATCCTTCTCCT  354

Query  352  CAAGCTCAA---------AAAGC-C----TT-CTACTATAGGCAATCTCCTCCACCCCCC  396
             ||||||||         ||||| |    || |||||| ||||||||||||||||| |||
Sbjct  355  AAAGCTCAACCTTCTCCTAAAGCTCAAGCTTTCTACTACAGGCAATCTCCTCCACCTCCC  414

Query  397  TCCGG-ACAACCTTGGTGGTGGTTGCTGTA  425
            ||||| | |||| |||||||||||| ||||
Sbjct  415  TCCGGGA-AACCGTGGTGGTGGTTGTTGTA  443


 Score =  257 bits (139),  Expect = 4e-68
 Identities = 162/173 (94%), Gaps = 2/173 (1%)
 Strand=Plus/Plus

Query  159  TCCTCCTCCTCCCCCGGTTTATTCTCGTCCGGTTGCT-TTtcctcctccacctccaatat  217
            ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct  123  TCCTCCTCCTCCCCCGGTTTATTCTCGTCCGGTTGCTCTTTC-TCCTCCACCTCCAATAT  181

Query  218  attctcctcctcctcctccgatctatccacctccaatatattctcctcctcctcctccaa  277
            |||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||| |
Sbjct  182  ATTCTCCTCCTCCTACTCCGATCTATCCACCTCCAGTATATTCTCCTCCTCCTACTCCGA  241

Query  278  tctatccacctccaatatattctcctcctcctactccaatttctccacctcca  330
            |||||||||||||| |||||||||||||||||||||| || | | ||||||||
Sbjct  242  TCTATCCACCTCCAGTATATTCTCCTCCTCCTACTCCGATCTATTCACCTCCA  294



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15338546778


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5