BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26090.1
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489454 jgi|Araly1|489454|fgenesh2_kg.6__2588__AT5G26090.1 1445 0.0
Ahg939283 jgi|Araly1|939283|scaffold_503474.1 246 2e-64
> Ahg489454 jgi|Araly1|489454|fgenesh2_kg.6__2588__AT5G26090.1
Length=981
Score = 1445 bits (782), Expect = 0.0
Identities = 894/949 (94%), Gaps = 4/949 (0%)
Strand=Plus/Plus
Query 199 CACGTCACCGTGGTCTCCTACGCCGGGAGGTCACATTTCGTCACAACGGAGCTGAAAATA 258
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1 CACGTCACCGTGGTCTCCTACGCCGGGAGGTCACATTTTGTCACAACGGAGCTGAAGATA 60
Query 259 CGAAATGGAATGCAAGGCTTGAAACGTCCAGAGATCGTTTACCACTGTCAAGCTATTAAT 318
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 61 CGAAATGGAATGCAAGGCTTGAAACGTCCAGAGATCGTTTACCACTGTCATGCTATAAAT 120
Query 319 AGTGGCCTCGATTATGGATGGCGACGAGCC-CTAAGGCCACCATTCGGCCATTCCTTCCA 377
|||||||| ||||||||||||||||||||| | |||||||||||| ||||||||||||||
Sbjct 121 AGTGGCCTTGATTATGGATGGCGACGAGCCAC-AAGGCCACCATTGGGCCATTCCTTCCA 179
Query 378 TGTACTCTTGGAAGGCGGCCAAAAACTGGAGGAGGAGATTCACCGCTGCCATTTCCGGTC 437
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 TGTACTCTTGGAAGGCGGCGAAAAACTAGAGGAGGAGATTCACCGCTGCCATTTCCGGTC 239
Query 438 AGTGCTTGGTACAGTAGATGTCGATATCCGTATGACCGCGATTGATGCTGAGATTTGTAA 497
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AGTGCTCGGTACAGCGGATGTCGATATCCGTATGACCGCGATTGATGCTGAGATTTGTAA 299
Query 498 TTTTAGAAAGGCATGTGCGGTTCATGAGGTTACACCGGAAGGGATAATGTTTGATGGTAA 557
||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 300 TTTTAAAAAGGCATGTGCGATTCATGAGGTTACACCGGAAGGGATAACATTTGATGGTAA 359
Query 558 AGAATGGAATTTTGAGGAGCGGTATCCAAGGCTGATACCAAAGAAATACCTCGAAGCTAA 617
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 AGAATGGAATTTTGAGGAGAGGTATCCAAGGCTGATACCAAAGAAATACCTCGAAGCGAA 419
Query 618 GTGGAAGCCTTGGCCACGACGCACCAGTCGTAGCAGTGGGGGCCAGGCCAGCGGACGTCG 677
|||||| ||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 420 GTGGAAACCTTGGCCACGACGCACCAACCGTAGCAGTGGGGGCCAGGGAAGCGGACGTCG 479
Query 678 ATCCTCAGGAGACGTGGGTTTCACGCTAATGATGAAGAACGAAATGTTTGGCTTGAAACG 737
| |||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 480 ACCCTCGGGAGACGTGGGTTTCAAGCTAATGATGAAGAACGAAATGTATGGCTTGAAACG 539
Query 738 TCCATCGGTTCTCTACCGGTGCAAGGCTTATGACAAATCCCTTCGGTGGCACGTATCGAT 797
||||||||||||||||||||||||| | | |||||||||||||||||||||| |||||||
Sbjct 540 TCCATCGGTTCTCTACCGGTGCAAGTCGTCTGACAAATCCCTTCGGTGGCACATATCGAT 599
Query 798 TCCC-ACGGCAGAATTTACATGGGATTTCGAAGTCCCACCATTTGGAACAGGCGTGGTCA 856
|||| | | | |||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 600 TCCCCATG-CGGAATTTACATGGGATTTCGAAGTCCCGCCATTTGGAACCGGCGTGGTCA 658
Query 857 TCCACCGTTGTGAATTCAAGTCAAGCCAAGGGACAGCGGACGTCGAAATTAAGACATTGT 916
|||||||||||||||||||||||||||||||||||||||| || || |||||||| ||||
Sbjct 659 TCCACCGTTGTGAATTCAAGTCAAGCCAAGGGACAGCGGAGGTTGAGATTAAGACGTTGT 718
Query 917 CGATGACATCTACGTTGTGCGGAGGGCATTTGTGTAAATATGTCATTAGGCCGAATGGTG 976
||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 719 CGATGACATCTACGTTGTGCGGAGGGCATTTGTGTAAATATATCATTAGGCCTAATGGTG 778
Query 977 TATACTTCGTTGGTTTTGAGACCTATTATCCGCACAATATTTTCTTAAGATTTCTTGAGT 1036
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 779 TATACTTCGTTGGTTTTGAGACCTATTATCCGCACAATATCTTGTTAAGATTTCTTGAGT 838
Query 1037 TCGTGAGGCCTGTTGACAAGCTTGTCGAGCCATGGAAGGCGTGGTCTCCACGACAGCTAA 1096
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 839 TCGTGAGACCTGTTGACAAGCTTGTCGAGCCATGGAAGGCGTGGTCTCCACGGCAGCTAA 898
Query 1097 AGGCTTTGCGGGAACGCACTAACAACCGCACCAGGTTACACGAAGACAA 1145
|||||||||||||||| || | |||| | ||||||| |||||| |||||
Sbjct 899 AGGCTTTGCGGGAACGTACCAGCAACAGAACCAGGTCACACGATGACAA 947
> Ahg939283 jgi|Araly1|939283|scaffold_503474.1
Length=574
Score = 246 bits (133), Expect = 2e-64
Identities = 171/190 (90%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 7 GCGAGATATAGGAAAGATTATAAATCAGAGTATAAAGTAAATCCAGACACCGTCACACAT 66
|||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 117 GCGAGATATAAAAAAGATTATAAATCAGAGTATACCGTAGATCCAGACACCGTCACACAT 176
Query 67 ATCGTTGTCTCCAATGAATTGTACGGTCTAAAGAAAGGAAACGCTGGCTTTGTATGCTCT 126
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||
Sbjct 177 ATCGTTGTCTCCAATGAATTGTATGGTCTAAAGAAAGGAAACGCTGGCTTCGTATGCACT 236
Query 127 CATGGTCCCAAGAAGTGGCGGCAGAGCAAGCCAGGAGACCGGTACATTTTGCTGAAGTTC 186
|||||||| ||| |||||| |||||||||||||| | ||||||| |||||| ||||
Sbjct 237 CATGGTCCAAAGGTTTGGCGGAAGAGCAAGCCAGGACAACGGTACAGTTTGCTTCGGTTC 296
Query 187 AAGCACAACG 196
||||||||||
Sbjct 297 AAGCACAACG 306
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45023164977
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5