BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26100.1
Length=528
Score E
Sequences producing significant alignments: (Bits) Value
Ahg939284 jgi|Araly1|939284|scaffold_503475.1 765 0.0
> Ahg939284 jgi|Araly1|939284|scaffold_503475.1
Length=570
Score = 765 bits (414), Expect = 0.0
Identities = 493/531 (93%), Gaps = 6/531 (1%)
Strand=Plus/Plus
Query 1 ATGGAAAACAAGTTGGT-TCTTGGAGC-CTTGTGTATATACCTTGTGTTACAAGGCACCT 58
|||||||||||||| || ||||||| | | | ||| ||| ||||||| ||||| ||||
Sbjct 22 ATGGAAAACAAGTT-GTCTCTTGGA-CTCCTATGTCTATGCCTTGTGATACAATTCACCA 79
Query 59 GCGGCGAGGAGAACAACCCTCTGATTAACCATTACGCTGATTACGAAACGATTCATCCTA 118
||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 80 GCGGCGAGGAGGACAACCCTCTGATAAACCATTATGCTGATTACGAAACGATTCATCCCA 139
Query 119 GCGAATACTACAGCTCCGATTTCGAACTCAAAGACGGAACCAATGTGATCTTCGAAGCCA 178
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 140 GCGAATACTACAGTTCCGATTTCGAACTCAAAGACGGAACCAATGTGATCTTCGAAGCCA 199
Query 179 TCAATGAATTGAAAGGGATCAAGAAACCAAAAGCAGGCTTT-ATGTGCAACTATGGCAAA 237
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||
Sbjct 200 TCAATGAATTGAAAGGGATCAAGAAACCAAAAGCAGG-TTTCATGTGCAACTATGGCCAA 258
Query 238 AAACAATGGACAAGGTCTCTTCCGGGAGACATTTTCTACGCCAAGTTCTTCTTTTACAGC 297
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 259 AAACAATGGACAAGGTCTCTTCCGGGAGACGTTTTCTACGCCAAGTTCTTCTTTTACCGG 318
Query 298 ATTAATCCAAACGCAAAGGTCGTTCAACATTGCCATTTCCGGTCAAATTTGGGTTATGTT 357
|||||||| | ||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 319 GTTAATCCACATGCAAAGGTCGTTCAACATTGCCATTTCCGATCGAATTTGGGCTATGTT 378
Query 358 GATGCCTATATCAAGATAACCCCAGCGCTCGGACGAACATGTCCCGGTTACAGATGCGTT 417
|| || |||||||||||||||||| ||||||||||| ||||||||||||| |||||| ||
Sbjct 379 GACGCATATATCAAGATAACCCCAACGCTCGGACGATCATGTCCCGGTTATAGATGCATT 438
Query 418 TTAGCGGTTAGACGTGAAGGTCTCTTGATGAAAGACACTAACGAACTCTTTCCTTGGACA 477
||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 439 TTAGCAATTAGACGTGAAGGCCTCTTGATGAAAGACACTAACGAACTCTTTCCTTGGACA 498
Query 478 CCTTGGCCTCGCCGCCACATTCAACCTAAGTTGCCTAAGATCACCAATTGA 528
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 499 CCTTGGCCTCGCCGCCACATTCAACCTAAGTTGCCTAAGATCACCAATTGA 549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 19230416856
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5