BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26110.1
Length=1261
Score E
Sequences producing significant alignments: (Bits) Value
Ahg315080 jgi|Araly1|315080|fgenesh1_pm.C_scaffold_2000113 1048 0.0
Ahg924634 jgi|Araly1|924634|scaffold_200195.1 961 0.0
> Ahg315080 jgi|Araly1|315080|fgenesh1_pm.C_scaffold_2000113
Length=681
Score = 1048 bits (567), Expect = 0.0
Identities = 644/682 (94%), Gaps = 2/682 (0%)
Strand=Plus/Plus
Query 249 ATGGATTGTGAGGAAAACGTTAGGG-ATGAATCACTCGTTTTGATTAAACAAGGAGCAGA 307
||||||||||||||||||||| ||| ||||||| |||||| |||| ||||||||||| ||
Sbjct 1 ATGGATTGTGAGGAAAACGTT-GGGAATGAATCGCTCGTTCTGATAAAACAAGGAGCGGA 59
Query 308 AGCTAGGGTGTTCGAGTCTACATTTGCTGGAAGAAGATCCATCGTGAAAGAACGTTTCTC 367
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 60 AGCTAGGGTGTTTGAGTCTACATTTGCTGGAAGAAGATCCATTGTGAAAGAACGATTCTC 119
Query 368 GAAGAAATATAGACATCCGATTTTGGATGCAAAACTCACACTTAAACGCTTGAATGCGGA 427
||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 120 GAAGAAATATAGACACCCGATTTTGGATGCGAAACTCACACTCAAACGCTTGAATGCGGA 179
Query 428 AGCTAGGTGTATGACAAAGGCAAGAAAGCTCGGGGTTTGTACTCCAGTCCTATATGCTGT 487
||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 180 GGCTAGGTGTATGACAAAGGCAAGAAAGCTCGGGGTTTGTACTCCAATCCTCTATGCTGT 239
Query 488 GGATACTCTGCTTCACTCTTTAACACTTGAGTACATTGAGGGGGTCTCTGTTAAGGATAT 547
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 240 GGATACTCTGCTTCACTCTTTAACACTTGAGTACATTGAGGGCGTCTCTGTTAAAGACAT 299
Query 548 TTTCCTTGAGTTTGGGACCAATGGGGTTGTTGAGGAACGTTTAGATGATGTTGCTGCTCA 607
||||||||| |||||| |||||||| || |||||||||| ||||||||||||||||||||
Sbjct 300 TTTCCTTGACTTTGGGGCCAATGGGATTATTGAGGAACGGTTAGATGATGTTGCTGCTCA 359
Query 608 GATTGGGGCTGCAATTGCTAAGCTCCATGATGGTGGCTTGGCTCATGGTGATTTGACCAC 667
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||
Sbjct 360 GATTGGGGCTGCAATTGCTAAGCTCCATGATGGTGGCCTGGCTCACGGTGATTTGACTAC 419
Query 668 ATCAAATATGTTAGTCAGAAGTGGAACAAATCAGCTGGTACTAATTGATTTTGGCTTGAG 727
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 420 ATCAAATATGTTAGTCAGAAGTGGAACAAATCAGCTGGTACTAATCGATTTTGGCTTGAG 479
Query 728 CGTCACATCGACCTTGCCTGAAGACAAAGCTGTTGATTTATATGTACTTGAAAGAGCCTT 787
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 480 TGTCACATCGACCTTGCCTGAAGACAAAGCTGTTGATTTATATGTGCTTGAAAGAGCCTT 539
Query 788 ACTCTCAATGCATTCGTCATGCGGGAATGTGATGGATCGTATACTGACGGCGTATAGGAA 847
||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 540 ACTCTCAATGCATTCTTCATGCGGGAATGTGATGGATCGTATATTGACAGCGTATAGGAA 599
Query 848 GTCCTCAAAGCAATGGTCAGCCACGTTTAACAAGCTCGCACAAGTGAGACAGCGAGGGAG 907
|||||| |||||||||||||||||||||||||||||||| |||||||| || ||||| ||
Sbjct 600 GTCCTCGAAGCAATGGTCAGCCACGTTTAACAAGCTCGCGCAAGTGAGGCAACGAGGTAG 659
Query 908 AAAGCGGACTATGATTGGATGA 929
||| ||||||||||||||||||
Sbjct 660 AAAACGGACTATGATTGGATGA 681
> Ahg924634 jgi|Araly1|924634|scaffold_200195.1
Length=710
Score = 961 bits (520), Expect = 0.0
Identities = 586/619 (95%), Gaps = 0/619 (0%)
Strand=Plus/Plus
Query 312 AGGGTGTTCGAGTCTACATTTGCTGGAAGAAGATCCATCGTGAAAGAACGTTTCTCGAAG 371
|||||||| |||||||||||| | |||||||||||||| ||||||||||| |||||||||
Sbjct 72 AGGGTGTTTGAGTCTACATTTACCGGAAGAAGATCCATTGTGAAAGAACGATTCTCGAAG 131
Query 372 AAATATAGACATCCGATTTTGGATGCAAAACTCACACTTAAACGCTTGAATGCGGAAGCT 431
||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 132 AAATATAGACACCCGATTTTGGATGCGAAACTCACACTCAAACGCTTGAATGCGGAGGCT 191
Query 432 AGGTGTATGACAAAGGCAAGAAAGCTCGGGGTTTGTACTCCAGTCCTATATGCTGTGGAT 491
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 192 AGGTGTATGACAAAGGCAAGAAAGCTCGGGGTTTGTACTCCAATCCTCTATGCTGTGGAT 251
Query 492 ACTCTGCTTCACTCTTTAACACTTGAGTACATTGAGGGGGTCTCTGTTAAGGATATTTTC 551
|||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||
Sbjct 252 ACTCTGCTTCACTCTTTAACACTTGAGTACATTGAGGGCGTCTCTGTTAAAGACATTTTC 311
Query 552 CTTGAGTTTGGGACCAATGGGGTTGTTGAGGAACGTTTAGATGATGTTGCTGCTCAGATT 611
||||| |||||| |||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct 312 CTTGACTTTGGGGCCAATGGGATTATTGAGGAACGGTTAGATGATGTTGCTGCTCAGATT 371
Query 612 GGGGCTGCAATTGCTAAGCTCCATGATGGTGGCTTGGCTCATGGTGATTTGACCACATCA 671
||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||
Sbjct 372 GGGGCTGCAATTGCTAAGCTCCATGATGGTGGCCTGGCTCACGGTGATTTGACTACATCA 431
Query 672 AATATGTTAGTCAGAAGTGGAACAAATCAGCTGGTACTAATTGATTTTGGCTTGAGCGTC 731
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 432 AATATGTTAGTCAGAAGTGGAACAAATCAGCTGGTACTAATCGATTTTGGCTTGAGTGTC 491
Query 732 ACATCGACCTTGCCTGAAGACAAAGCTGTTGATTTATATGTACTTGAAAGAGCCTTACTC 791
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 492 ACATCGACCTTGCCTGAAGACAAAGCTGTTGATTTATATGTGCTTGAAAGAGCCTTACTC 551
Query 792 TCAATGCATTCGTCATGCGGGAATGTGATGGATCGTATACTGACGGCGTATAGGAAGTCC 851
||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 552 TCAATGCATTCTTCATGCGGGAATGTGATGGATCGTATATTGACAGCGTATAGGAAGTCC 611
Query 852 TCAAAGCAATGGTCAGCCACGTTTAACAAGCTCGCACAAGTGAGACAGCGAGGGAGAAAG 911
|| |||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 612 TCGAAGCAATGGTCAGCCACGTTTAACAAGCTCGCGCAAGTGAGGCAACGAGGGAGAAAA 671
Query 912 CGGACTATGATTGGATGAG 930
|||||||||||||||||||
Sbjct 672 CGGACTATGATTGGATGAG 690
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119925412
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5