BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26114.1
Length=273
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489455 jgi|Araly1|489455|fgenesh2_kg.6__2589__AT5G26114.1 361 2e-99
> Ahg489455 jgi|Araly1|489455|fgenesh2_kg.6__2589__AT5G26114.1
Length=255
Score = 361 bits (195), Expect = 2e-99
Identities = 236/256 (92%), Gaps = 2/256 (1%)
Strand=Plus/Plus
Query 1 ATGGTCCTCAAACGTGACAAGGAGGAGGATAAATCTGTGAGGAAGAAGAAACTGAACGCA 60
|||||||| ||||||| | ||||||||||||||||||||||| ||||||||||| ||
Sbjct 1 ATGGTCCTTAAACGTGCCGTTGAGGAGGATAAATCTGTGAGGAATAAGAAACTGAAGGCG 60
Query 61 GATAATTCGATTCTGGTAC-TCCCAATTATACTTGGAGAGAGATGTAGGGTTCTTGATGC 119
|| |||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGAATTCGATTCTGATACGT-CCAATTATACTTGGAGAGAGATGTAGGGTTCTTGATGC 119
Query 120 GGAAGAAGGAGATGAAGATCAAAGCCAAAGAATGGCAGAGAACAGAATATATCGTCCTAG 179
|||||||||||||||||| || |||||||||||| || ||||| ||||||||||||||||
Sbjct 120 GGAAGAAGGAGATGAAGAACATAGCCAAAGAATGCCAAAGAACCGAATATATCGTCCTAG 179
Query 180 ATCCATGAGTTCGATCTCGATTTCGAGAACCAAGTCGAACATCGATATGAATGCTATTCC 239
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 180 ATCCATGAGTTCGATCTCGATTTCGAGAACTAACTCGAACATCGATATGAATGCAATTCC 239
Query 240 CGTAGAAGTAACATCA 255
||||||||||||||||
Sbjct 240 CGTAGAAGTAACATCA 255
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9500741661
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5