BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26120.1
Length=2208
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489456 jgi|Araly1|489456|fgenesh2_kg.6__2590__AT5G26120.1 1951 0.0
> Ahg489456 jgi|Araly1|489456|fgenesh2_kg.6__2590__AT5G26120.1
Length=2237
Score = 1951 bits (1056), Expect = 0.0
Identities = 1228/1312 (94%), Gaps = 8/1312 (1%)
Strand=Plus/Plus
Query 816 AAATGACCTTTTCCAAATGATGGTCGATCTAAAACCGCGGTTT-ATCCGATTCCCGGGTG 874
|||||| ||||||||||||||||| ||||||||||||| |||| ||||||||||||||||
Sbjct 931 AAATGATCTTTTCCAAATGATGGTTGATCTAAAACCGC-GTTTCATCCGATTCCCGGGTG 989
Query 875 GTTGTTTTGTGGAGGGTGATTGGTTAGGCAATGCATTCCGCTGGAAAGAAACCGTGAGAG 934
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 990 GTTGTTTTGTGGAGGGTGAATGGTTAGGCAATGCATTCCGCTGGAAAGAAACCGTGGGAG 1049
Query 935 CTTGGGAAGAGAGACCTGGCCATTATGGTGATGTTTGGAAGTACTGGACTGATGATGGCC 994
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1050 CTTGGGAAGAGAGACCTGGCCATTATGGCGATGTTTGGAAGTACTGGACTGATGATGGCC 1109
Query 995 TTGGCCACTTTGAATTCTTTCAACTTGCAGAAGACCTTGGTGCATCCCCAATATGGGTGT 1054
|||| |||||||||||||||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 1110 TTGGTCACTTTGAATTCTTTCAACTTGCAGAAGACATTGGTGCAGCCCCAGTATGGGTGT 1169
Query 1055 TTAACAATGGGATCAGTCACAATGATCAAGTTGAAACAAAAAATGTCATGCCTTTTGTTC 1114
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1170 TTAACAATGGGATCAGTCACAATGATCAAGTTGAAACAGAAAATGTCAAGCCTTTTGTTC 1229
Query 1115 AAGAAGCGATTGACGGTATAGAGTTTGCTCGTGGAGATTCTAATTCTACATGGGGATCGG 1174
||||||||||||||||||||||||||||||| |||||| || | ||||||||||||||||
Sbjct 1230 AAGAAGCGATTGACGGTATAGAGTTTGCTCGCGGAGATCCTCAGTCTACATGGGGATCGG 1289
Query 1175 TTCGAGCTGCAATGGGACATCCAGAGCCTTTTGAACTGAAATATGTTGCGGTTGGGAATG 1234
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1290 TTCGAGCTGCAATGGGACATCCAGAGCCTTTTGAACTGAAATATGTTGCGGTCGGGAATG 1349
Query 1235 AAGATTGTTTTAAGAGTTACTACAGAGGAAACTATCTTGAATTCTATAATGCTATCAAAA 1294
|||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||||
Sbjct 1350 AAGATTGTTTTAAGAGTTACTACAGAGGAAACTATCTTGAGTTTTATGATGCTATCAAAA 1409
Query 1295 AAGCTTATCCAGATATTAAAATCATCTCCAACTGCGATGCATCGGCTAAACCGCTCGATC 1354
||||||||||||| || ||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1410 AAGCTTATCCAGACATCAAAATCATCTCCAACTGCGATGCATCGTTTAAGCCGCTCGATC 1469
Query 1355 ACCCGGCCGATTACTTTGATTACCACATTTACACTCTTGC-AAGAGACTTGTTTTCCAAG 1413
|||| || || |||||||||||||||||||| |||||||| ||| || |||||||||| |
Sbjct 1470 ACCCTGCTGACTACTTTGATTACCACATTTATACTCTTGCAAAG-GATTTGTTTTCCAGG 1528
Query 1414 TCCCATGATTTTGACAATACACCGCGAAACGGTCCAAAGGCTTTTGTTAGCGAATACGCT 1473
|||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1529 TCCCATGACTTTGACAATACACCGCGCAACGGTCCAAAGGCTTTTGTTAGCGAGTACGCT 1588
Query 1474 GTAAACAAAGCAGATGCTAAAAATGGCAACCTTTTGGCCGCTCTTGGTGAAGCAGCTTTC 1533
||||||||| | |||||||| ||||| |||||||||||||||||||| |||||||| |||
Sbjct 1589 GTAAACAAAACGGATGCTAATAATGGAAACCTTTTGGCCGCTCTTGGGGAAGCAGCCTTC 1648
Query 1534 CTCCTTGGTTTGGAAAAGAACAGTGACATTGTAGAAATGGTTAGCTATGCACCTCTCTTT 1593
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1649 CTCCTTGGTTTGGAAAAGAACAGTGACATTGTAGGAATGGTTAGCTATGCACCTCTCTTT 1708
Query 1594 GTCAACACAAACGATAGAAGGTGGATCCCTGATGCAATAGTTTTTAACTCGTCTCATCTA 1653
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1709 GTCAACACAAATGATAAAAGGTGGATCCCTGATGCAATAGTTTTTAACTCGTCTCATCTA 1768
Query 1654 TATGGAACTCCTAGCTATTGGGTCCAACACTTCTTCACCGAGTCAAGCGGAGCAACTCTT 1713
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1769 TATGGAACTCCTAGCTATTGGGTCCAACAGTTCTTCACCGAGTCAAGCGGAGCAACTCTT 1828
Query 1714 CTCAATTCTACACTTAAGGGAAAGACTTCTTCTGTTGAAGCATCTGCCATCTCTTTCCAA 1773
||||||||||| ||||||||||| ||| |||| ||||||||||||| ||||| ||||||
Sbjct 1829 CTCAATTCTACTCTTAAGGGAAACTCTTTTTCTATTGAAGCATCTGCTATCTCCTTCCAA 1888
Query 1774 ACCAATGGCAAAGA-TTACATACAGATCAAGGCTGTAAACTTTGGAGAACAATCAGTAAA 1832
||||||||||| | ||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 1889 GCCAATGGCAAA-ACTTACATACAAATCAAGGCTGTAAACTTTGGAGAAGAATCAGTAAA 1947
Query 1833 TCTAAAGGTAGCAGTGACAGGATTGATGGCAAAATTTTATGGATCCAAAAAGAAAGTACT 1892
|||||||||| | ||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 1948 TCTAAAGGTAACGGTGACCGGATTGATCGCAAAATTTTATGGATCCAAGAAGAAAGTACT 2007
Query 1893 TACATCTGCCAGTGTGATGGATGAGAACTCTTTTTCAAACCCAAATATGATTGTGCCACA 1952
||||||||||| ||||||||||||||| ||||| |||| |||| | ||||||||||| ||
Sbjct 2008 TACATCTGCCAATGTGATGGATGAGAATTCTTTCTCAACCCCAGAGATGATTGTGCCGCA 2067
Query 1953 AGAAAGTTTGCTGGAGATGACTGAGCAGGAAGACCTTATGTTTGTTCTCCCGCCGCACTC 2012
|||||| ||||| |||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 2068 AGAAAGCTTGCTAGAGATGACTGAGGAGGAGGACCTTATGTTTGTTCTCCCGCCGCACTC 2127
Query 2013 GTTCTCTTCCTTCGATTTGTTGACAGAATCTGAAAATGTCATCAAGATGCCAATATCTGA 2072
|||||| |||||||||||||||| | ||||||||||| |||||||||||||||||| ||
Sbjct 2128 GTTCTCCTCCTTCGATTTGTTGAAACAATCTGAAAATATCATCAAGATGCCAATAT--GA 2185
Query 2073 TTCATACAAGAAAACTTCAACAATGTGAAGAGAAACATCATCTTGGAGACTT 2124
||| ||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2186 TTCCTACAACAAAACTTCAACAATGTGAAGAGAAACATCATGTTGGAGACTT 2237
Score = 1109 bits (600), Expect = 0.0
Identities = 751/821 (91%), Gaps = 21/821 (3%)
Strand=Plus/Plus
Query 1 ACTTTTAATCCTAGTTTCACTGCTCATTCGTGTCTTTCTTCTATCAAGG-----T--CTT 53
|||||||||||| |||||||||||||||||||||||||||||||||||| | |||
Sbjct 1 ACTTTTAATCCTCGTTTCACTGCTCATTCGTGTCTTTCTTCTATCAAGGTTAATTACCTT 60
Query 54 TCTCTGGTTAAATTTGGTGATTATGGACATGGAAACATCTTGGAGATTTCTCAGAAGTGT 113
|||||| ||| || |||||| ||||||||||| || |||||||||||||||| ||||||
Sbjct 61 TCTCTGATTAGATCTGGTGACGATGGACATGGAGACTTCTTGGAGATTTCTCAAAAGTGT 120
Query 114 TTGCTTACTTTCATTTATCCTTGG-GTCTTTTTCTGTCTACCAAACCCTTTGTCTTGTTG 172
|||| ||||||| ||| || |||| | ||| |||||||||||||| |||||||||||| |
Sbjct 121 TTGCATACTTTCCTTTCTCATTGGCG-CTTGTTCTGTCTACCAAAGCCTTTGTCTTGTCG 179
Query 173 ACGCTCAAGAAGACGCCATTGTAACACTGCAAGTAGATGCTTCTAACGTGACACGGCGAC 232
| ||||||| |||||||||||||||| |||||||||||||||||||| ||||| | ||||
Sbjct 180 ATGCTCAAGCAGACGCCATTGTAACATTGCAAGTAGATGCTTCTAACATGACAAGACGAC 239
Query 233 CGATTCCCGAAACTCTATTTGGGATCTTCTTTGAGGAAATAAATCATGCTGGAGCAGGTG 292
| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 240 CAATTCCTGAAACTCTATTCGGAATCTTCTTTGAGGAAATAAATCATGCTGGAGCAGGTG 299
Query 293 GACTATGGGCTGAACTTGTTAGCAATAGAGGATTTGAAGCTGGTGGACAAATCATTCCTT 352
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 300 GACTATGGGCTGAACTTGTTAGCAACAGAGGATTTGAAGCTGGTGGACAAACCATTCCTT 359
Query 353 CCAATATCTGGCCTTGGTCCATTATTGGAGATGAATCATCCATTTATGTTGTTACAGACC 412
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 360 CCAATATCTGGCCTTGGTCCATTATTGGAGATGAATCATCCATATATGTCGTTACAGACC 419
Query 413 GTTCTTCGTGTTTTGAGCGTAACAAGATTGCTCTTAGAATGGAAGTCCTTTGTGACAGCA 472
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 420 GTTCTTCGTGTTTTGAGCGTAACAAGATTGCTCTTAAAATGGAAGTGCTTTGTGACAGCA 479
Query 473 A---C--T--C--TTGT---CCGTTAGGAGGAGTCGGGGTTTATAACCCGGGTTACTGGG 520
| | | | |||| || | ||||||||| ||| |||||||||||||||| ||||
Sbjct 480 ATGGCAGTAGCAATTGTTGTCCATCAGGAGGAGTTGGGATTTATAACCCGGGTTATTGGG 539
Query 521 GCATGAACATTGAAGAAGGGAAGAAATATAAAGTGGTGTTATATGTGCGTTCGACTGGGG 580
|||||||||||||||||| ||||||||| ||||||||||| |||||||||||||| || |
Sbjct 540 GCATGAACATTGAAGAAGCGAAGAAATACAAAGTGGTGTTCTATGTGCGTTCGACCGGAG 599
Query 581 ACATCGATGTGTCTGTGTCGTTTACAAGTTCTAATGGATCAGTGACTCTTGCGTCAGAAA 640
||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||
Sbjct 600 ACATCGATGTGTCTGTGTCGTTTACAAGTTCGAATGGATCATTGACTCTTGCGTCAGAAA 659
Query 641 ATATTATAGCTTTGGCTTCTGATCTTTTAAATTGGACAAAAAAGGAAATGCTTTTAGAAG 700
||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||
Sbjct 660 ATATTATAGCTTTGGCTTCTGATGTTTCAAATTGGACTAAAAAGGAAATGCTTTTAGAAG 719
Query 701 CAAATGGAACAGATAATGGTGCAAGACTTCAGTTTACAACTACCAAAAAAGGTTCAATTT 760
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 720 CAAATGGAACAGATAATGGTGCAAGACTTCAGTTTACAACAACCAAAAAAGGTTCAATTT 779
Query 761 GGTTTGATCAAGTCTCAGCCATGCCTATGGATACTTACAAG 801
||||||| |||||||||||||||||||||||||||||||||
Sbjct 780 GGTTTGACCAAGTCTCAGCCATGCCTATGGATACTTACAAG 820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83112914590
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5