BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26140.1
Length=432
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894539 jgi|Araly1|894539|Al_scaffold_0006_2535 534 2e-151
Ahg488037 jgi|Araly1|488037|fgenesh2_kg.6__1171__AT5G11950.1 390 4e-108
> Ahg894539 jgi|Araly1|894539|Al_scaffold_0006_2535
Length=612
Score = 534 bits (289), Expect = 2e-151
Identities = 401/451 (89%), Gaps = 23/451 (5%)
Strand=Plus/Plus
Query 1 ATGCATATTGAGCACATATCTGGTGAGACTGTTGGAGAGGTAAGAATTGTTTCAGACATG 60
|||| ||||||| ||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 166 ATGCCTATTGAG---ATATCTGGTGAGACTGTTGGAGATGTAAGAATTGTTGCAGACATG 222
Query 61 CACGAGCGCAAAGCTACAATGGCTCAAGAAGCTGGGGCTTTCATTGCGCT-CCTAGGCGA 119
||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |||||
Sbjct 223 CACGAGCGCAAAGCTGCAATGGCTCAAGAAGCTGAGGCTTTCATTGCGCTCCCT-GGCGA 281
Query 120 G--AGGT-A-T--GAA-A--CT----A-----TGGAGGAACTACTGGAGATGATAACATG 161
| | | | || | || | | | |||||||||||||||||||||||
Sbjct 282 GTTTTCTAATTCCAAAGATTCTAGCAAGTTTTTAAAAGAACTACTGGAGATGATAACATG 341
Query 162 GGCACAGCTTGGTATCCATAAGAAGACGGTTGGTCTTTTGAATGTTGATGGTTACTATAA 221
||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||
Sbjct 342 GGCACAGCTTGGTATTCATAAGAAGACGGTTGGTCTTTTGAATGCTGATGGTTACTATAA 401
Query 222 CAATTTGCTTGCTTTCTTTGACACTGGAGTTGAAGAAGGTTTTATTAAACAAGGTGCTTG 281
|||||| |||||||| |||||||||||||||||||||||||||||||| | ||| ||| |
Sbjct 402 CAATTTACTTGCTTTGTTTGACACTGGAGTTGAAGAAGGTTTTATTAAGCCAGGCGCTCG 461
Query 282 TAATATCGTTGTTTCCGCGCCATCGGCTAGAGAACTTATGGAGAAGATGGAGCTATATAC 341
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 462 TAATATCGTTGTTTCTGCTCCATCGGCTAGAGAACTTATGGAGAAGATGGAGCTATATAC 521
Query 342 TCCTTCACACAAGTACATTGCTTCTCACCAAAGCTGGAAAGTTGAACCACTTGGAGATTA 401
||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 522 TCCTTCACACAAGCACATTGCTTCTCACCAAAGCTGGAAAGTTGAACAACTTGGAGATTA 581
Query 402 CCCACTACTAAATGAGAACAAGCCTCAATGA 432
||||||| ||||| |||||| ||||||||||
Sbjct 582 CCCACTAATAAATCAGAACAGGCCTCAATGA 612
> Ahg488037 jgi|Araly1|488037|fgenesh2_kg.6__1171__AT5G11950.1
Length=858
Score = 390 bits (211), Expect = 4e-108
Identities = 350/417 (84%), Gaps = 10/417 (2%)
Strand=Plus/Plus
Query 16 ATATCTGGTGAGACTGTTGGAGAGGTAAGAATTGTTTCAGACATGCACGAGCGCAAA-GC 74
||||||||||||||||| ||||| |||||| ||||| |||||||||| ||||| ||| ||
Sbjct 308 ATATCTGGTGAGACTGTGGGAGATGTAAGAGTTGTTGCAGACATGCATGAGCG-AAAGGC 366
Query 75 TACAATGGCTCAAGAAGCTGGGGCTTTCATTGCGCT-CCTAGGCGAGAGGTATGAAACTA 133
| ||||||| || ||||||| ||| |||||||| || ||| | ||| | |||| ||| |
Sbjct 367 TGCAATGGCACAGGAAGCTGAGGCCTTCATTGCACTCCCT--G-GAG-GTTATGGAACAA 422
Query 134 TGGAGGAACTACTGGAGATGATAACATGGGCACAGCTTGGTATCCATAAGAAGACGGTTG 193
||||||| || ||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 423 TGGAGGAGCTGTTGGAGATGATAACATGGTCACAACTTGGTATCCATAAGAAGACGGTTG 482
Query 194 GTCTTTTGAATGTTGATGGTTACTATAACAATTTGCTTGCTTTCTTTGACACTGGAGTTG 253
|||| ||||||||||||| ||||||||||||||||||||||| |||||||| || || |
Sbjct 483 GTCTACTGAATGTTGATGGATACTATAACAATTTGCTTGCTTTATTTGACACCGGTGTCG 542
Query 254 AAGAAGGTTTTATTAAACAAGGTGCTTGTAATATCGTTGTTTCCGCGCCATCGGCTAGAG 313
||||||||||||| || | |||||| |||| || || ||||| || ||| | || | ||
Sbjct 543 AAGAAGGTTTTATCAAGCCAGGTGCACGTAACATTGTGGTTTCTGCTCCAACAGCCAAAG 602
Query 314 AACTTATGGAGAAGATGGAGCTATATACTCCTTCACACAAGTACATTGCTTCTCACCAAA 373
| |||||||||||||||||| ||||||||||||||||||| | |||| || ||| |||
Sbjct 603 AGCTTATGGAGAAGATGGAGGAATATACTCCTTCACACAAGCAGGTTGCATCGCACGAAA 662
Query 374 GCTGGAAAGTTGAACCACTTGGAGATTACCCACTACTAAATGAGAACAAGCCTCAAT 430
|||||||||||||| ||| ||||||||||| |||| | | |||||||| ||||
Sbjct 663 GCTGGAAAGTTGAAGAACTCGGAGATTACCCGGGACTACA--A-AACAAGCCGCAAT 716
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 15567480312
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5