BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26160.1
Length=3364
Score E
Sequences producing significant alignments: (Bits) Value
Ahg489460 jgi|Araly1|489460|fgenesh2_kg.6__2594__AT5G26160.1 2852 0.0
> Ahg489460 jgi|Araly1|489460|fgenesh2_kg.6__2594__AT5G26160.1
Length=3263
Score = 2852 bits (1544), Expect = 0.0
Identities = 1842/1985 (93%), Gaps = 23/1985 (1%)
Strand=Plus/Plus
Query 1372 AAAACATTCAGTTGATGGAACACCCAAGTCAACTTTCAGTAGCCAGGTAATTTCTGAGTC 1431
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1286 AAAACATTCAGTTGATGGAGCACCCAAGTCAACTTTCAGTAGCCAGGTAATTTCTGAGTC 1345
Query 1432 ATCTGAGAGTAAATCTCCATCGGCAATGGATGATAGTACAG-AGAAAGAAAACTTTTTGG 1490
||||||||||||||||||||| || ||| ||||| ||| | ||||||||||||||||||
Sbjct 1346 ATCTGAGAGTAAATCTCCATCAGCCATGTATGATTCTAC-GAAGAAAGAAAACTTTTTGG 1404
Query 1491 AAGTTAAATCTAGTTATAAAGCCGCCAAAATATCAATGACGTCACTAAGCTTGGATGACA 1550
|||| ||||||| ||| ||||| ||||||||||||| || ||||||||||||||||||||
Sbjct 1405 AAGTGAAATCTACTTACAAAGCTGCCAAAATATCAACGAAGTCACTAAGCTTGGATGACA 1464
Query 1551 TTACTGAGTCTGTAGCTAATGATTTTCTAAACATGCTTGAACTTGAGGAGTGTTCTTATG 1610
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1465 TTACTGAGTCTGTAGCTAATGATTTTCTAAACATGCTTGAACTTGAGGAATGTTCTTATG 1524
Query 1611 TTTATACCTCAGATGGTGAACCTACATCTCCTCGTGAATCTCTGCTTCGAGAGTTTGAGA 1670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1525 TTTATACCTCAGATGGTGAACCTACATCTCCTCGTGAATCTCTGCTTCGAGAGTTTGAGA 1584
Query 1671 AGGAAGCTTTCGCTTCTGGAAACTTTCTCTTAGATTTAAATGGAGAAGCAGAATATGTTT 1730
| || |||||||||||| |||||||||||||||||||| |||||||||||| | ||||||
Sbjct 1585 ATGAGGCTTTCGCTTCTAGAAACTTTCTCTTAGATTTAGATGGAGAAGCAGCAGATGTTT 1644
Query 1731 CTGATATTGATGAGAAATCGAATGATTTCTCATTCTCTGCAAGTTCTTTGGATGTTGGGG 1790
|||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||| |
Sbjct 1645 CTGATACTGATGAGAAATCGAATGATTTCTCGTTCTCTGCAAGTTCTTTGGGTGTTGGAG 1704
Query 1791 AAAACAAGCGTGAGGGAAAATCTCAGCTGTTAATAGACAGGAG-AAAGGCCAAGGTACTT 1849
||| |||||||||||||||||||||||||||||||||||| || |||| |||||||| ||
Sbjct 1705 AAAGCAAGCGTGAGGGAAAATCTCAGCTGTTAATAGACAGAAGGAAAG-CCAAGGTATTT 1763
Query 1850 GAAGACTTGGAAACTGAAACTTTATTGCGAGAGTGTGATTTTGATGACAACA-GTTTTGA 1908
||||||||||||||||||| |||||| |||||||| || ||| |||| || | |||||||
Sbjct 1764 GAAGACTTGGAAACTGAAAATTTATTCCGAGAGTGGGAATTTAATGATAA-ATGTTTTGA 1822
Query 1909 TAACTCTTTATGTGTTTGCTCTGATGGGTTTGGAAGTCCAATAGAGCTTCCAGTTGACAA 1968
|||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1823 GAACTCTTTTTGTGCTTGCTCTGATGGGTTTGGAAGTCCAATAGAGCTTCCAGTTGACAA 1882
Query 1969 GGGATTAGATTTGCTTCCACTTGGAGATAATATTGGTCCTTCTGTTTGGACAAAAGGGGG 2028
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1883 GGGAGTAGATTTGCTTCCACTTGGAGATAATATTGGTCCTTCTGTTTGGACAAAAGGGGG 1942
Query 2029 AGGGTGTATTCGGTCCATGAATCATTTACTGTTCAGAGAGTCTAAGGAGGCATCACAACT 2088
||||||||| |||||||| |||| |||| |||||||||||| |||||| |||||||| ||
Sbjct 1943 AGGGTGTATCCGGTCCATAAATCCTTTATTGTTCAGAGAGTGTAAGGATGCATCACATCT 2002
Query 2089 GATCATGCAAGTTTCAGTCCCGGTGGTGCTAGTATCAGAATTAGGTTCTGATATCCTTGA 2148
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2003 AATCATGCAAGTTTCAGTCCCGGTGGTGCTAGTATCAGAATTAGGTTCTGATATCCTTGA 2062
Query 2149 AATACTACAAATTTTTGCAGCTTCTGGAATTGAAGGACTTTGCTCTGAAGTTAATGCATT 2208
|||||| |||| ||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2063 AATACTCCAAAGTTTGGCAGCTTCTGGAATTAAAGGACTTTGCTCTGAAGTTAATGCATT 2122
Query 2209 AATTCCTTTGGAAGATATTATGGGGAAGACAATACATGAAGTTGTCGATGTCACAAAATT 2268
||| |||||||||||||||||||||||||| ||||||||||||||||||| | |||||||
Sbjct 2123 AATGCCTTTGGAAGATATTATGGGGAAGACGATACATGAAGTTGTCGATGGCGCAAAATT 2182
Query 2269 TAAGAGAACTGGACAGGATTGTTCTGACAAGAGTAAAGGTGTCGTGGTTCAGAAACCACC 2328
||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||| |
Sbjct 2183 TAAGAGAACTGGACATGATTGCTCTGACAAGAGTAGAGGTGTCGTGGTTCAGAAACCATC 2242
Query 2329 AGGACAGCTGCATTTGTGTTC-TTCAAATGAAGAATTTGG---------ATCCAGTATGT 2378
|||||| ||| |||||| ||| |||||||||||||||||| ||||| |||||
Sbjct 2243 AGGACAACTGGATTTGT-TTCCTTCAAATGAAGAATTTGGGGGCTTTGGATCCAATATGT 2301
Query 2379 GTCCAAGTAATGTACCTCTTGAAGATGTCACTTCCTTAGCTATTGATGAGATATACATTC 2438
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 2302 GTCCAAGTTATGTACCTCTTGAAGATATCACTTCCTTAGCTATTGATGAGATATACCTTC 2361
Query 2439 TCTCGATAGAAGGATTAAAGATTCAATGCAGCATGTCAGATCAAGATCCACCATCAGGAA 2498
|||| |||||||||||||||||||||||||| |||||||| |||||||||| ||||||||
Sbjct 2362 TCTCAATAGAAGGATTAAAGATTCAATGCAGTATGTCAGACCAAGATCCACAATCAGGAA 2421
Query 2499 TTGCACCAAAACCCATGGATCAGTCTGACGCTCTAGAGTTGAT-ACGTTTTTCCTTAACC 2557
|||||||||||||||||||||||||||| |||||||||||||| | ||||||||| |||
Sbjct 2422 TTGCACCAAAACCCATGGATCAGTCTGATGCTCTAGAGTTGATGA-GTTTTTCCTCAACG 2480
Query 2558 TTGGATGAGTGGTTAAGGCTTGACCAGGGAATGCTAGAAAACAAAGATCAAGATTTAG-C 2616
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||| || |
Sbjct 2481 TTGGATGAGTGGTTAAGGCTTGACCATGGAATGCTAGACAACAAAGATCAAGATC-AGGC 2539
Query 2617 TTCTAATGGAAAGGGTCATACGTTAAGGAACAAATTGACACTTGCTCTTCAAGTGTTACT 2676
||||| ||||||||||||||| ||||||||||| |||||||||||||||||||| |||||
Sbjct 2540 TTCTAGTGGAAAGGGTCATACATTAAGGAACAAGTTGACACTTGCTCTTCAAGTATTACT 2599
Query 2677 TCGAGATCCATCCCTAAATAATGAACCTATTGGTGCATCTATGCTTGCTCTGATTCAAGT 2736
| ||||||||| | | |||||||||||| ||||||||||||||||||||||||| |||||
Sbjct 2600 TAGAGATCCATTCGTCAATAATGAACCTGTTGGTGCATCTATGCTTGCTCTGATCCAAGT 2659
Query 2737 TGAAAGGTCTTTGGATTCCCCAAATTCATCTTTATGTAGTTTGGCTCAAGAAGGAAGAAA 2796
||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||||||
Sbjct 2660 TGAAAGGTCTTTGGATTCCTCAAATTCATCTGTGTGTAGTTTGGCTCAAGAAGGAAGAAA 2719
Query 2797 TAAGGAATCCTTTGGATATGATACGCAGTTGTGGAGAATCACTGAAATTGGTCTAGCGGG 2856
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 2720 TAAGGACTCCTTTGGATATGATACGCAGTTGTGGAGAATCACTGAAATTGCTCTAACGGG 2779
Query 2857 TTTGAAAATTGAGCCTGGTGCAGACCATCCATGGTGTACGAAATCACAACAACAGTCTGG 2916
|||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||
Sbjct 2780 TTTGAAAATTGAGCCTGGTGTAGACCATCCATGGTGTACGAAATCACAGCAGCAGTCTGG 2839
Query 2917 -ATCCCGCTGGTTACTTGCCAATGGTACTGACAAAACCATAAAGTGTCAAGCTTCAGAGT 2975
| |||||||||||||||||| |||| |||| |||||||| |||||||||||||||||||
Sbjct 2840 CA-CCCGCTGGTTACTTGCCAGTGGTGCTGATAAAACCATCAAGTGTCAAGCTTCAGAGT 2898
Query 2976 CAAAGGTGATCATTGTATCAAACGTGCAAGCAACTAGAAAGAGGTTGGACACATTGTGGA 3035
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2899 CAAAGGCGATCATTGTATCAAACCCACAAGCAACTAGAAAGAGGTTGGACACATTGTGGA 2958
Query 3036 GTATAATATCTGATAGGCACCATCAAGAAGGTGATTTGAGTAACTCTGCTGCCTCTGTTC 3095
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2959 GTATAACATCTGATAGGCACCATCAAGAAGGTGATTTGAGTGGCTCTGCTGCCTCTGTTC 3018
Query 3096 CATTTACAAGAAATTTAGACGTGATCTTTTCAAATGAAGTAACAGAAAGATCGTGATAGT 3155
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3019 CATTTACAAGAAATTTAGACGTGATCTTTTCAAATGAAGTAACAGAAAGATCGTGATAGT 3078
Query 3156 AGCATTTCCATCGGCATATTATTATACTTCTTTATTTCCACTCTATGCTGAAGAACCAGT 3215
||||||||||| ||||||||||||||||||||| |||||||||| | ||||||||| |||
Sbjct 3079 AGCATTTCCATTGGCATATTATTATACTTCTTTCTTTCCACTCTCTACTGAAGAACTAGT 3138
Query 3216 CATTTTGATGTGAAAGCAGTCTTGTTCATGGTGGAAAATGCTTCGCTGGCTCCTCTTTAA 3275
|||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||
Sbjct 3139 CATTTTGATGTGAAAGCAGTCTTGTTCACGGTGGAAAATGCTTCGCTGACTCCCCTTTCT 3198
Query 3276 CTACTTGAAAAAAGTAGATGTATATGTCATCGGATTTATCAAGGTGTATGAGAAATAGAA 3335
||| |||||||||||||||| | |||||||| | |||||||| ||||| |||||||| ||
Sbjct 3199 CTAGTTGAAAAAAGTAGATGCAGATGTCATCAGTTTTATCAATGTGTACGAGAAATATAA 3258
Query 3336 TTTTT 3340
|||||
Sbjct 3259 TTTTT 3263
Score = 1733 bits (938), Expect = 0.0
Identities = 1199/1318 (91%), Gaps = 46/1318 (3%)
Strand=Plus/Plus
Query 48 AATCAAATGAAACCCTACCGGCGAAACCAAGTATTAAATTCACTCACGCTTTTCCCGTGA 107
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 1 AATCAAATGAAACCCTACCGGCGAAACCAAGTATTAACTTCACTCACGCTTTTCCCATGA 60
Query 108 AGTCATCTTCCAAAGAATCTTCAAAAGTTTTTCTATTTTTAGAATCCCCAGAAACTCTTT 167
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 AGTCATCTTCCAAAGATTCTTCAAAAG-TTTTCTATTTTTAGAATCCCCAGAAACTCTTT 119
Query 168 CAAAATCCTTTGAAACCGCATTGTTGATGACTTGATCAAAGAGAGTGTAAGCAATGTCTG 227
||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 120 CAAAATCCTCTGAAACCGCATTG-T-ATGACTTGATCAAAGAGAGTGTAAGCAATGTCTG 177
Query 228 TGAATGATAGAGAGGATTCATCAGCAGATTTATATAATGGACAGCTT-TTG-AGAGACAT 285
|||||||||||||||| |||| | |||||| ||| || ||| || |||||
Sbjct 178 TGAATGATAGAGAGGAGTCAT---C---------TAATGGGCAG-TTGTTGAAG-GACAT 223
Query 286 TAAGGAGGTAAGTAAAGCTCTTTACTTG-AC--CAATGGACCTCAAAGACCGGTGCTTTC 342
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 224 TAAGGAGGTAAGTAAAGCTCTTTACTTGAACAACAATGGACCTCAAAGACCGGTGCTTTC 283
Query 343 GTTGTCTCCTCCTGTTCGATCTCAATCTGTTTCGAGAACTACAGAGATTGGGTTAGTATT 402
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 284 GTTGTCTCCTTCTGTTCGATCTAAATCTGTTTCGAGAACTACAGAGATTGGGGTAGTATT 343
Query 403 GTCAAATAAGAAGAAGAAATCGTTGGTACCATGGAATTGGAAGAAGCCTTTGAATGCTAT 462
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||
Sbjct 344 GTCAAATAAGAAGAAGAAATTGTTGGTACCATGGGATTGGAAGAAGCCTTTGAAAGCTAT 403
Query 463 AGCTCATTTTGGGCAGCGTAGGTTTGATGTTTGTTTTCTACTCCATGTTCATTCCATTGA 522
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 404 AGCTCATTTTGGGCAGCGTAGGTTTGATGTTTGTTTTCTTCTCCATGTTCATTCCATTGA 463
Query 523 AGGGTTGCCTTTGAATTTGGATGGTACTAAGTTAGTTGTGCAGTGGAAGAGGAAAGATGA 582
||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 464 AGGGTTGCCTTTGAATTTGGATGGTACTAAGTTGGTTGTGCAGTGGAAGAGGAAGGATGA 523
Query 583 AGTGATGACTACTCAACCTTCCAAGGTTTTGCAAGGAACTGCTGAGTTTGAAGAGACCTT 642
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 524 AGAAATGACTACTCAACCTTCCAAGGTTTTACAAGGAACTGCTGAGTTTGAAGAGACCTT 583
Query 643 AACGCATAGATGTTCGGTATACGGTAGTAAACATGGGCCTCATCGTTCTGCAAAGTATCA 702
|||||||||||||||||||||||| || |||||||||||||||||||| ||||| |||||
Sbjct 584 AACGCATAGATGTTCGGTATACGGAAGCAAACATGGGCCTCATCGTTCGGCAAAATATCA 643
Query 703 AGTGAAGCtttttttGATCTATGTCTCTCCTGTTGATGCTCCATGGCTTGTAT-TAGGTA 761
|||||||||||||||| |||||||||||||||||||||||||||||||||| | |||| |
Sbjct 644 AGTGAAGCTTTTTTTGGTCTATGTCTCTCCTGTTGATGCTCCATGGCTTGT-TCTAGGGA 702
Query 762 AGCATTGGATTGATCTT-AC-AAGGATATTGCCGTTGTCTCTGGAGGAAATGGAAGGTAC 819
|||||||| ||||| || || ||| ||||| |||||||||||||||||| ||||||||||
Sbjct 703 AGCATTGGGTTGAT-TTCACCAAG-ATATTACCGTTGTCTCTGGAGGAACTGGAAGGTAC 760
Query 820 AAGAAGCACGAGAAAGTGGAACACGAGCTTCAAATTATCTGGCCTGGCGGAGTCTGCAGT 879
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 761 AAGAAGCACGAGAAAGTGGAACACGAGCTTCAAATTATCAGGCCTGGCGGAGTCTGCAGT 820
Query 880 GTTGAATCTTAGTTTTGATTACTCAGTTGTCACCAGTTCAGTCTGTGACTCTACAAGTAA 939
||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||| |
Sbjct 821 TTTGAATCTTAGTTTTGATTACTCGGTTGTCAGCAGTTCAGTCTGTGACTCAACAAGTGA 880
Query 940 -AAATGTGATGCTGAGGCGGGTTGGTAGTGTTCCAAGTATGGACCATAGATC-TCCACCG 997
||| |||||||||| |||||||||||||||||||||||||||||||||||| || | |
Sbjct 881 GAAA-GTGATGCTGAAGCGGGTTGGTAGTGTTCCAAGTATGGACCATAGATCGTC-ATCT 938
Query 998 CTTGATGATGGAAAGGTTGTCAATGAAGTCTCCCCGAGTCTGAGTTTGAATCTTTCCCAG 1057
||||||||||||||||| ||||| ||||||| ||||||||||||||| |||||||||||
Sbjct 939 CTTGATGATGGAAAGGTCATCAATCAAGTCTCGCCGAGTCTGAGTTTGGATCTTTCCCAG 998
Query 1058 TCAATAGATTTTCTCTATGAGAAACTTGGCGAACAAAACCCACAAAGATCAACAGGAACT 1117
||||||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||
Sbjct 999 TCAATAGATTTTCTCTATGAGAAACTTAGCGAACAAAACCCACAAAGATCAACCGAAACT 1058
Query 1118 GAGGTAG-AACTAGGT---T-TGGA-GACTGACAAACAAGCAGCTGATTCTGATGACAGT 1171
| | || || || | | |||| |||| | | | || |||||| || | | |
Sbjct 1059 G-G-TATCAAGTATGAACATCTGGATGACT--CTGGCGA-CA-CTGATTTTGCTTTTACT 1112
Query 1172 GGAAAAGGAGTAGAGACGTTTCAGCAAGAAAGATCCGGGCTGGAAGAAAGCAATGATCCA 1231
||| |||||||||||| ||| |||||||||||||| |||||||||||| || |||||
Sbjct 1113 GGACAAGGAGTAGAGATGTTACAGCAAGAAAGATCAAGGCTGGAAGAAACCACCAATCCA 1172
Query 1232 AATACAGAGTCCTCGAGAATTGAAATTATTGATGTCCATGAGATACTTAAAGATGAAGAT 1291
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1173 AATACGGAATCCTCGAGAATTGAAATTATTGATGTCCATGAGATACTTAAAGATGAAGAT 1232
Query 1292 GAATCCGTTTTCGAGGAAACC-TATTTTATTGATCAGTTATCAGTGGCCGCACTAAAA 1348
|||||| ||||||| || ||| | |||||||||||| |||||||||||||||||||||
Sbjct 1233 GAATCCTTTTTCGAAGACACCCT-TTTTATTGATCACTTATCAGTGGCCGCACTAAAA 1289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 126998121101
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5