BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G26170.1

Length=522
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg351629 jgi|Araly1|351629|fgenesh1_pg.C_scaffold_6002222           765    0.0  


> Ahg351629 jgi|Araly1|351629|fgenesh1_pg.C_scaffold_6002222
Length=522

 Score =  765 bits (414),  Expect = 0.0
 Identities = 488/524 (93%), Gaps = 4/524 (1%)
 Strand=Plus/Plus

Query  1    ATGAAT-GATGCAGACACAAACTTGGGGAGTAGTTTCAGCGATGATACTCACTCTGTG-T  58
            |||||| || ||||| |||||||||| ||| ||||||||||||||||||||||| | | |
Sbjct  1    ATGAATGGA-GCAGAGACAAACTTGGCGAGGAGTTTCAGCGATGATACTCACTCAG-GAT  58

Query  59   TCGAGTTTCCGGAGCTAGACTTGTCAGATGAATGGATGGATGATGATCTTGTGTCTGCGG  118
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  59   TGGAGTTTCCGGAGCTAGACTTGTCAGATGAATGGATGGATGATGATCTTGTGTCTGCGG  118

Query  119  TTTCCGGGATGAATCAGTCTTATGGTTATCAGACTAGTGATGTTGCTGGTGCTTTATTCT  178
            |||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  119  TTTCGGGGATGAATCAGTCTTATGGTTATCAGACTAGTGATGTTGCTGCTGCTTTATTCT  178

Query  179  CAGGTTCTTCTAGCTGTTTCAGTCATCCTGAATCTCCAAGTACCAAAACTTATGTTGCTG  238
            |||||||||||||| ||||| ||||||| ||||||| ||| |||||  ||| |||||| |
Sbjct  179  CAGGTTCTTCTAGCAGTTTCTGTCATCCCGAATCTCAAAGGACCAACGCTTCTGTTGCGG  238

Query  239  CTACAGCCACTGCTTCTGCCGACAACCaaaacaagaaagaaaagaaaaaaaTTAAAGGGA  298
            ||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||| ||
Sbjct  239  CTACAGCCACTGCCTCTGCCGACAACCAAAACAAGAAAGAAAAGAAGAAAGTTAAAGAGA  298

Query  299  GAGTTGCGTTCAAGACACGGTCCGAGGTGGAAGTGCTTGACGACGGGTTCAAGTGGAGAA  358
            ||| |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct  299  GAGCTGCGTTCAAGACACGGTCTGAGGTGGAAGTGCTTGATGACGGGTTCAAGTGGAGAA  358

Query  359  AGTATGGGAAGAAGATGGTGAAGAACAGCCCACATCCAAGAAACTACTACAAATGTTCAG  418
            ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct  359  AGTATGGGAAGAAGATGGTGAAGAACAGCCCACATCCCAGAAACTACTACAAATGTTCAG  418

Query  419  TTGATGGCTGTCCCGTGAAGAAAAGGGTTGAACGAGACAGAGATGATCCGAGCTTTGTGA  478
            ||||| ||||||| |||||||||||||||||| |||| ||||||||||||||||||||||
Sbjct  419  TTGATAGCTGTCCTGTGAAGAAAAGGGTTGAAAGAGATAGAGATGATCCGAGCTTTGTGA  478

Query  479  TAACAACTTACGAGGGTTCCCACAATCACTCAAGCATGAACTAA  522
            |||||||||||||||| ||||||||||||| ||||  |||||||
Sbjct  479  TAACAACTTACGAGGGCTCCCACAATCACTTAAGCGCGAACTAA  522



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19001483322


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5