BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G26180.1 Length=2113 Score E Sequences producing significant alignments: (Bits) Value Ahg894546 jgi|Araly1|894546|Al_scaffold_0006_2542 2196 0.0 > Ahg894546 jgi|Araly1|894546|Al_scaffold_0006_2542 Length=1545 Score = 2196 bits (1189), Expect = 0.0 Identities = 1398/1499 (93%), Gaps = 14/1499 (1%) Strand=Plus/Plus Query 201 CACAAACCAAAAACGCCGCCGGGAAAACAACGATTTTCCGGCGCCGAGAGTCGCAAACCA 260 |||||||| ||||||||||||| ||||||| ||||||||||||||||||||| ||||||| Sbjct 13 CACAAACCCAAAACGCCGCCGGCAAAACAAAGATTTTCCGGCGCCGAGAGTCACAAACCA 72 Query 261 AAAACACCACCAGCTACTAAGCAAAAG-TTTTCCAG-CTTAGAGAGATCAGCTCTCTACG 318 |||||||||||||||||||| | || | || ||| | | ||||||||||||||||||| Sbjct 73 AAAACACCACCAGCTACTAAAC-AACGCTTCTCC-GCCGCCGAGAGATCAGCTCTCTACG 130 Query 319 CCAGAAGAGAAGCAGCTAATATACTCC-GTACCGTTCTCCGTGGTGACGCCGAGCGACGA 377 ||||||||||||||||||| |||||| || || |||||||||||||||||||||| ||| Sbjct 131 CCAGAAGAGAAGCAGCTAACGTACTCCGGT-CCATTCTCCGTGGTGACGCCGAGCGCCGA 189 Query 378 GCCGTTGCTTCCATCAAATCACTCGTCTTAAGTCCTTCCGTTCGCAACAAACGCGGCACT 437 ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |||| Sbjct 190 GCCGTTGCTTCCATCAAATCACTCGTCTTTAGTCCCTCCGTTCGCAACAAACGCGCCACT 249 Query 438 TTCGCTCTTGTCTGCGAGACTCTCAAATATCTTACTGTGATTAAAGATGTTCTTGATATA 497 |||||||| |||||||| ||||||||| |||||||||||||||||||||||||||| ||| Sbjct 250 TTCGCTCTCGTCTGCGAAACTCTCAAACATCTTACTGTGATTAAAGATGTTCTTGAAATA 309 Query 498 GCTAATGTATTGAATAGTAAATGGAAGAGGCAAGAGCCATTGGTCTT-CATCGTTTGCTA 556 |||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| Sbjct 310 GCTAATGTATTGAATAGTAAATGGAAGAGGCAAGAGCCATTGGT-TTACATTATTTGCTA 368 Query 557 CGATATCCTCTTTGGCAAGGATACTCCATCAATTGGTGATGCAGAGAAGTTTCTTATGCG 616 ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 369 CGATATCCTCTTTGGCAAGGATACTCCATCAATAGGTGATGCTGAGAAGTTTCTTATGCG 428 Query 617 GCATAAAGAGGCGTTATTGTCAGGTTTAGCTACGCTTTTAGTGAGGAAGAAAGTCGATAG 676 ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 429 GCATAAAGATGCGTTATTGTCAGGTTTAGCTACGCTTTTAGTGAGAAAGAAAGTCGAAAG 488 Query 677 TGTTGATCAGTTGTTGGG---TTCTAAGCTTACTGGTCATTTGAAACCACGGTATGTTCG 733 |||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||| Sbjct 489 TGTTGATCAGTTGTTGGGTCTTTCTAAGCTTAATGGTCATTTGAAACCACGTTATGTTCG 548 Query 734 TGTTAATACGCTTAAGATGGATGTGGATTCTGCAGTGCAGGAGCTGGAGAAGCATTACAC 793 ||| ||||| |||||||||||||||||||| || ||||||||||||||||| ||||| || Sbjct 549 TGTAAATACACTTAAGATGGATGTGGATTCCGCGGTGCAGGAGCTGGAGAAACATTATAC 608 Query 794 GGTGCAGAAGGACGAGACAGTTCCTGACTTGTTGGTGTTGCCCCCTGGCAGCGATTTGCA 853 |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 609 GGTGCAGAGGGACGAGACAGTTCCTGACTTGTTGGTGTTGCCCCCTGGCAGTGATTTGCA 668 Query 854 TGCTCATCGTTTGGTTGCGAATGGACGTATATTTTTGCAGGGGAAAGCAAGTTCAATGGT 913 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 669 TGCTCATCGTTTGGTTGCGAATGGGCGTATATTTTTGCAGGGGAAAGCAAGTTCAATGGT 728 Query 914 AGCAGCAGCACTGCAGCCACAAGCAGGATGGGAGGTTCTTGATGCCTGTTCAGCTCCAGG 973 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 729 AGCAGCAGCACTGCAGCCAGAAGCAGGATGGGAGGTTCTTGATGCCTGTTCAGCTCCAGG 788 Query 974 AAACAAAACTATTCATCTTGCTGCTCTTATGGAAGGACAAGGAAAAATCATAGCATGTGA 1033 ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| || Sbjct 789 AAACAAAACTATTCATCTTGCTGCTCTTATGCAAGGACAAGGAAAAATTATAGCATGCGA 848 Query 1034 GCTAAATGAAGAACGAGTTAAGCGTTTGGAACATACTATAAAGCTCTCTGGTGCCTCCAA 1093 |||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| Sbjct 849 GCTAAATGAAGAACGAGTAAAGCGTTTGGAACATACTATAAAGCTGTCTGGTGCCTCCAA 908 Query 1094 TATCGAAGTCTGTCATGGTGATTTTTTGGGCCTAAATCCGAAAGATCCTTCTTTTGCGAA 1153 |||| |||| | ||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 909 TATCCAAGTTTTTCATGGTGATTTTTTGGGCTTAAATCCGAAAGATCCTTCTTTTGTGAA 968 Query 1154 GATTCGGGCTATATTGTTGGATCCTTCTTGCTCTGGCTCTGGCACGATTACAGATCGTTT 1213 | | |||||||||||||||||||| |||||||||||||| ||||| |||||||||||||| Sbjct 969 GGTCCGGGCTATATTGTTGGATCCGTCTTGCTCTGGCTCCGGCACCATTACAGATCGTTT 1028 Query 1214 GGACCATCTCCTTCCTTCTCATTCAGAAGATAATAACATGAACTATGACTCCATGAGACT 1273 |||||||||||| ||||||||||||| || ||||||||||||||||||||||||| | Sbjct 1029 GGACCATCTCCTCCCTTCTCATTCAGCAG---ATAACATGAACTATGACTCCATGAGGTT 1085 Query 1274 GCACAAGCTCGCTGTTTTCCAGAAAAAGGCTCTTGCCCATGCACTCTCCTTTCCAAAGGT 1333 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1086 ACACAAGCTCGCTGTTTTCCAGAAAAAGGCTCTTGCCCATGCACTCTCCTTTCCACAGGT 1145 Query 1334 TGAGAGAGTCGTATACAGCACATGCTCCATCTACCAAATAGAAAACGAAGATGTCGTCTC 1393 |||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||| Sbjct 1146 CGAGAGAGTAGTATACAGCACATGCTCCATCCACCAAATAGAAAACGAAGATGTGGTCTC 1205 Query 1394 CTCTGTTTTACCTCTGGCATCATCCTTGGGCTTCAAACTTGCTACCCCCTTTCCTCAGTG 1453 || |||||| ||||||| |||||||||||||||||||| |||||||| ||||||||||| Sbjct 1206 ATCCGTTTTAGCTCTGGCTTCATCCTTGGGCTTCAAACTCGCTACCCCTTTTCCTCAGTG 1265 Query 1454 GCAGCGTCGTGGTCTCCCTGTATTTGCAGGATCTGAACATCTACTTAGGATGGATCCGGT 1513 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 1266 GCAGCGTCGTGGTCTCCCTGTATTTGCAGGATCTGAACATCTACTCAGAATGGATCCGGT 1325 Query 1514 GGAGGACAAAGAAGGGTTCTTCATCGCTTTATTCGTCAGGGCAAACAAACTCGATAACCC 1573 |||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||| Sbjct 1326 GGAGGACAAAGAAGGGTTCTTCATTGCTTTATTCGTCAAGACAAACAAACTCGATAACCC 1385 Query 1574 AAAATCGTCTGAACTTCCCGATAGAGTGTGTAGACGAAGACCCAAAGAAAGAACCATGCA 1633 ||| |||||||||||||||| |||| | |||||||||||| |||||||||||||||||| Sbjct 1386 AAAGCCGTCTGAACTTCCCGAAAGAGAGAGTAGACGAAGACGCAAAGAAAGAACCATGCA 1445 Query 1634 GTTACATCCCTATCTTTGTCCCAAAATGTTCAGAGCTTGGAGTGGGACCTTGCACAGGC 1692 |||||||||| ||||||||| |||||||||||||||| |||| ||||||||||||||| Sbjct 1446 ATTACATCCCTTTCTTTGTCCAAAAATGTTCAGAGCTTTGAGTCGGACCTTGCACAGGC 1504 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 79494341315 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5