BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26180.1
Length=2113
Score E
Sequences producing significant alignments: (Bits) Value
Ahg894546 jgi|Araly1|894546|Al_scaffold_0006_2542 2196 0.0
> Ahg894546 jgi|Araly1|894546|Al_scaffold_0006_2542
Length=1545
Score = 2196 bits (1189), Expect = 0.0
Identities = 1398/1499 (93%), Gaps = 14/1499 (1%)
Strand=Plus/Plus
Query 201 CACAAACCAAAAACGCCGCCGGGAAAACAACGATTTTCCGGCGCCGAGAGTCGCAAACCA 260
|||||||| ||||||||||||| ||||||| ||||||||||||||||||||| |||||||
Sbjct 13 CACAAACCCAAAACGCCGCCGGCAAAACAAAGATTTTCCGGCGCCGAGAGTCACAAACCA 72
Query 261 AAAACACCACCAGCTACTAAGCAAAAG-TTTTCCAG-CTTAGAGAGATCAGCTCTCTACG 318
|||||||||||||||||||| | || | || ||| | | |||||||||||||||||||
Sbjct 73 AAAACACCACCAGCTACTAAAC-AACGCTTCTCC-GCCGCCGAGAGATCAGCTCTCTACG 130
Query 319 CCAGAAGAGAAGCAGCTAATATACTCC-GTACCGTTCTCCGTGGTGACGCCGAGCGACGA 377
||||||||||||||||||| |||||| || || |||||||||||||||||||||| |||
Sbjct 131 CCAGAAGAGAAGCAGCTAACGTACTCCGGT-CCATTCTCCGTGGTGACGCCGAGCGCCGA 189
Query 378 GCCGTTGCTTCCATCAAATCACTCGTCTTAAGTCCTTCCGTTCGCAACAAACGCGGCACT 437
||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| ||||
Sbjct 190 GCCGTTGCTTCCATCAAATCACTCGTCTTTAGTCCCTCCGTTCGCAACAAACGCGCCACT 249
Query 438 TTCGCTCTTGTCTGCGAGACTCTCAAATATCTTACTGTGATTAAAGATGTTCTTGATATA 497
|||||||| |||||||| ||||||||| |||||||||||||||||||||||||||| |||
Sbjct 250 TTCGCTCTCGTCTGCGAAACTCTCAAACATCTTACTGTGATTAAAGATGTTCTTGAAATA 309
Query 498 GCTAATGTATTGAATAGTAAATGGAAGAGGCAAGAGCCATTGGTCTT-CATCGTTTGCTA 556
|||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||
Sbjct 310 GCTAATGTATTGAATAGTAAATGGAAGAGGCAAGAGCCATTGGT-TTACATTATTTGCTA 368
Query 557 CGATATCCTCTTTGGCAAGGATACTCCATCAATTGGTGATGCAGAGAAGTTTCTTATGCG 616
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 369 CGATATCCTCTTTGGCAAGGATACTCCATCAATAGGTGATGCTGAGAAGTTTCTTATGCG 428
Query 617 GCATAAAGAGGCGTTATTGTCAGGTTTAGCTACGCTTTTAGTGAGGAAGAAAGTCGATAG 676
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 429 GCATAAAGATGCGTTATTGTCAGGTTTAGCTACGCTTTTAGTGAGAAAGAAAGTCGAAAG 488
Query 677 TGTTGATCAGTTGTTGGG---TTCTAAGCTTACTGGTCATTTGAAACCACGGTATGTTCG 733
|||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||
Sbjct 489 TGTTGATCAGTTGTTGGGTCTTTCTAAGCTTAATGGTCATTTGAAACCACGTTATGTTCG 548
Query 734 TGTTAATACGCTTAAGATGGATGTGGATTCTGCAGTGCAGGAGCTGGAGAAGCATTACAC 793
||| ||||| |||||||||||||||||||| || ||||||||||||||||| ||||| ||
Sbjct 549 TGTAAATACACTTAAGATGGATGTGGATTCCGCGGTGCAGGAGCTGGAGAAACATTATAC 608
Query 794 GGTGCAGAAGGACGAGACAGTTCCTGACTTGTTGGTGTTGCCCCCTGGCAGCGATTTGCA 853
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 609 GGTGCAGAGGGACGAGACAGTTCCTGACTTGTTGGTGTTGCCCCCTGGCAGTGATTTGCA 668
Query 854 TGCTCATCGTTTGGTTGCGAATGGACGTATATTTTTGCAGGGGAAAGCAAGTTCAATGGT 913
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 669 TGCTCATCGTTTGGTTGCGAATGGGCGTATATTTTTGCAGGGGAAAGCAAGTTCAATGGT 728
Query 914 AGCAGCAGCACTGCAGCCACAAGCAGGATGGGAGGTTCTTGATGCCTGTTCAGCTCCAGG 973
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 729 AGCAGCAGCACTGCAGCCAGAAGCAGGATGGGAGGTTCTTGATGCCTGTTCAGCTCCAGG 788
Query 974 AAACAAAACTATTCATCTTGCTGCTCTTATGGAAGGACAAGGAAAAATCATAGCATGTGA 1033
||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||
Sbjct 789 AAACAAAACTATTCATCTTGCTGCTCTTATGCAAGGACAAGGAAAAATTATAGCATGCGA 848
Query 1034 GCTAAATGAAGAACGAGTTAAGCGTTTGGAACATACTATAAAGCTCTCTGGTGCCTCCAA 1093
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 849 GCTAAATGAAGAACGAGTAAAGCGTTTGGAACATACTATAAAGCTGTCTGGTGCCTCCAA 908
Query 1094 TATCGAAGTCTGTCATGGTGATTTTTTGGGCCTAAATCCGAAAGATCCTTCTTTTGCGAA 1153
|||| |||| | ||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 909 TATCCAAGTTTTTCATGGTGATTTTTTGGGCTTAAATCCGAAAGATCCTTCTTTTGTGAA 968
Query 1154 GATTCGGGCTATATTGTTGGATCCTTCTTGCTCTGGCTCTGGCACGATTACAGATCGTTT 1213
| | |||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 969 GGTCCGGGCTATATTGTTGGATCCGTCTTGCTCTGGCTCCGGCACCATTACAGATCGTTT 1028
Query 1214 GGACCATCTCCTTCCTTCTCATTCAGAAGATAATAACATGAACTATGACTCCATGAGACT 1273
|||||||||||| ||||||||||||| || ||||||||||||||||||||||||| |
Sbjct 1029 GGACCATCTCCTCCCTTCTCATTCAGCAG---ATAACATGAACTATGACTCCATGAGGTT 1085
Query 1274 GCACAAGCTCGCTGTTTTCCAGAAAAAGGCTCTTGCCCATGCACTCTCCTTTCCAAAGGT 1333
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1086 ACACAAGCTCGCTGTTTTCCAGAAAAAGGCTCTTGCCCATGCACTCTCCTTTCCACAGGT 1145
Query 1334 TGAGAGAGTCGTATACAGCACATGCTCCATCTACCAAATAGAAAACGAAGATGTCGTCTC 1393
|||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 1146 CGAGAGAGTAGTATACAGCACATGCTCCATCCACCAAATAGAAAACGAAGATGTGGTCTC 1205
Query 1394 CTCTGTTTTACCTCTGGCATCATCCTTGGGCTTCAAACTTGCTACCCCCTTTCCTCAGTG 1453
|| |||||| ||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 1206 ATCCGTTTTAGCTCTGGCTTCATCCTTGGGCTTCAAACTCGCTACCCCTTTTCCTCAGTG 1265
Query 1454 GCAGCGTCGTGGTCTCCCTGTATTTGCAGGATCTGAACATCTACTTAGGATGGATCCGGT 1513
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1266 GCAGCGTCGTGGTCTCCCTGTATTTGCAGGATCTGAACATCTACTCAGAATGGATCCGGT 1325
Query 1514 GGAGGACAAAGAAGGGTTCTTCATCGCTTTATTCGTCAGGGCAAACAAACTCGATAACCC 1573
|||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||
Sbjct 1326 GGAGGACAAAGAAGGGTTCTTCATTGCTTTATTCGTCAAGACAAACAAACTCGATAACCC 1385
Query 1574 AAAATCGTCTGAACTTCCCGATAGAGTGTGTAGACGAAGACCCAAAGAAAGAACCATGCA 1633
||| |||||||||||||||| |||| | |||||||||||| ||||||||||||||||||
Sbjct 1386 AAAGCCGTCTGAACTTCCCGAAAGAGAGAGTAGACGAAGACGCAAAGAAAGAACCATGCA 1445
Query 1634 GTTACATCCCTATCTTTGTCCCAAAATGTTCAGAGCTTGGAGTGGGACCTTGCACAGGC 1692
|||||||||| ||||||||| |||||||||||||||| |||| |||||||||||||||
Sbjct 1446 ATTACATCCCTTTCTTTGTCCAAAAATGTTCAGAGCTTTGAGTCGGACCTTGCACAGGC 1504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79494341315
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5