BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26200.1
Length=1263
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942207 jgi|Araly1|942207|scaffold_602751.1 1620 0.0
> Ahg942207 jgi|Araly1|942207|scaffold_602751.1
Length=1078
Score = 1620 bits (877), Expect = 0.0
Identities = 1001/1060 (94%), Gaps = 11/1060 (1%)
Strand=Plus/Plus
Query 117 TTAGCTC-AAA-ATGAGTTTAGGTGCTTTGATGGAAGAGAAGAGAAGAGCAACAACTTCA 174
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10 TTAGCTCAAAATATGAGTTTAGGTGCTTTGATGGAAGAGAAGAGAAGAGCAACAACTTCA 69
Query 175 ------TCTTCTTCTTCTCAGGTACATATGTCAAATGATATAGATTGGCAAATGCTTGAT 228
|||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 70 TCTTCTTCTTCTTCTTCTCAGGTACATATGTCTAATGATATAGATTGGCAAATGCTTGAT 129
Query 229 AAATCGAGGTTTTTCTTCCTCGGTGCTGCTCTTTTCTCCGGTGTATCCACTGCTCTTTAC 288
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 130 AAATCGAGGTTTTTCTTTCTCGGTGCTGCTCTTTTCTCCGGTGTGTCCACTGCTCTTTAC 189
Query 289 CCTATTGTAGTTCTCAAAACAAGGCAACAAGTCTCTCCGACTCGTGTCTCATGTGCCAAC 348
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 190 CCTATTGTAGTTCTCAAAACAAGGCAACAAGTCTCTCCGACTCGTGTCTCTTGCGCCAAC 249
Query 349 ATTTCTCTGGCTATTGCTAGACTTGAAGGTCTTAA-AGGGTTTTACAAGGGTTTTGGAAC 407
|||||||||||||||||||||||||| |||| ||| ||||||||||||||| ||||||||
Sbjct 250 ATTTCTCTGGCTATTGCTAGACTTGAGGGTC-TAAGAGGGTTTTACAAGGGGTTTGGAAC 308
Query 408 ATCTTTGCTTGGAACCATCCCGGCTCGTGCTCTCTATATGACTGCTCTAGAGATTACAAA 467
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 309 ATCTTTGCTTGGAACTATCCCGGCTCGTGCTCTCTATATGACAGCTCTAGAGATTACGAA 368
Query 468 GAGTAGTGTAGGTCAAGCAACTGTTAGGTTAGGATTGTCTGATACTACGTCTTTGGCTGT 527
||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||
Sbjct 369 GAGTAGTGTAGGTCAAGCAACTGTTAGTTTAGGATTGTCGGATACTACGGCTTTGGCTGT 428
Query 528 TGCTAATGGTGCAGCTGGTTTGACCTCGGCTGTGGCTGCCCAGACTGTCTGGACTCCGAT 587
|||||||||||||||||||||||||||||| || ||||| ||| ||||||||| |||||
Sbjct 429 TGCTAATGGTGCAGCTGGTTTGACCTCGGCCGTTGCTGCTCAGGTTGTCTGGACCCCGAT 488
Query 588 TGATATTGTGAGTCAAGGGCTTATGGTTCAAGGCGATGTCTCCTTGAGTAAGCATCTTCC 647
|||| ||||||||||| |||||||||||||||||||| | ||||||||||||||| ||||
Sbjct 489 TGATGTTGTGAGTCAACGGCTTATGGTTCAAGGCGATCTTTCCTTGAGTAAGCATATTCC 548
Query 648 TGGAGTGATGAACTCTTGCAGATACAGAAATGGGTTTGATGCTTTTAGAAAGATTCTTTA 707
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 TGGAGTGATGAATTCTTGCAGATACAGAAATGGGTTTGATGCTTTTAGAAAGATTCTTTA 608
Query 708 CACAGATGGACCAAGAGGGTTCTACAGAGGATTTGGGATCTCGATCTTGACTTACGCACC 767
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 609 CACAGATGGACCAAGAGGGTTCTACAGAGGATTCGGGATCTCGATCTTGACTTACGCGCC 668
Query 768 TTCCAACGCGGTTTGGTGGGCGTCTTATTCTTTGGCTCAAAAATCAATTTGGTCTCGATA 827
||| || || || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 669 TTCAAATGCCGTATGGTGGGCGTCCTATTCTTTGGCTCAAAAATCAATTTGGTCTCGATA 728
Query 828 CAAGCACTCCTACAACCACAAGGAAGATGCTGGTGGCTCAGTGGTGGTTCAAGCGTTGAG 887
|| |||||||| | ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 729 CACGCACTCCTGCGACCACAATAAAGATGCTGGTGGCTCAGTGGTGGTTCAAGCGTTGAG 788
Query 888 TGCAGCTACAGCAAGCGGTTGCTCGGCTTTAGTAACTATGCCAGTAGACACAATCAAGAC 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 TGCAGCTACAGCAAGCGGTTGCTCGGCTTTAGTAACTATGCCAGTAGACACAATCAAGAC 848
Query 948 GCGGTTGCAAGTCTTAGACGCAGAAGAGAACGGGAGGAGACGAGCAATGACAGTGATGCA 1007
|||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 849 ACGGTTGCAGGTCTTAGACACAGAAGAGAACGGGAGGAGACGAGCAATGACAGTGATGCA 908
Query 1008 GTCAGTGAAGAGCTTGATGAAGGAAGGAGGAGTTGGTGCTTGTTACAGAGGATTAGGACC 1067
||| |||| |||||||||||||||||||||| |||| ||||||||||||||||| |||||
Sbjct 909 GTCGGTGACGAGCTTGATGAAGGAAGGAGGATTTGGGGCTTGTTACAGAGGATTGGGACC 968
Query 1068 AAGATGGGTCTCAATGTCGATGTCCGCAACAACGATGATCACAACCTACGAGTTCTTGAA 1127
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 969 AAGGTGGGTCTCAATGTCGATGTCCGCAACAACAATGATCACAACCTACGAGTTCTTGAA 1028
Query 1128 GCGCCTAGCAACAAAGAAGCAGAAATGATATATTGATAAA 1167
|||||| |||||||||||||||||||||||||| ||||||
Sbjct 1029 GCGCCTGGCAACAAAGAAGCAGAAATGATATAT-GATAAA 1067
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47196171246
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5