BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G26210.1
Length=1178
Score E
Sequences producing significant alignments: (Bits) Value
Ahg942208 jgi|Araly1|942208|scaffold_602752.1 1258 0.0
> Ahg942208 jgi|Araly1|942208|scaffold_602752.1
Length=812
Score = 1258 bits (681), Expect = 0.0
Identities = 762/800 (95%), Gaps = 10/800 (1%)
Strand=Plus/Plus
Query 161 AGATGGAAGCAGGTGGCGCGTACAATCCACGCACTGTTGAAGAGGTGTTTAGGGATTTTA 220
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 19 AGATGGACGCAGGTGGCGCGTACAATCCACGCACTGTTGAAGAGGTGTTTAGGGATTTTA 78
Query 221 AGGGTCGTAGAGCTGGCATGATTAAGGCTTTAACCACTGATGTTCAGGAGTTTTTCCGAC 280
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 79 AGGGTCGTAGAGCTGGCATGATTAAGGCTTTAACCACTGATGTTCAGGAGTTTTTCCGGC 138
Query 281 TTTGTGATCCCGAAAAGGAGAACCTTTGCCTTTACGGACATCCAAATGAGCACTGGGAAG 340
|||||||||||||||||||||||||||||||||| || ||||| |||||||||||||| |
Sbjct 139 TTTGTGATCCCGAAAAGGAGAACCTTTGCCTTTATGGCCATCCCAATGAGCACTGGGAGG 198
Query 341 TGAATTTGCCAGCTGAAGAGGTTCCTCCTGAGCTCCCAGAGCCTGTCTTGGGTATCAATT 400
||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
Sbjct 199 TGAATTTGCCAGCTGAAGAGGTTCCCCCGGAGCTCCCAGAGCCTGTCTTGGGTATCAACT 258
Query 401 TTGCCAGAGACGGGATGGCGGAAAAGGATTGGTTGTCCCTTGTTGCTGTCCACAGTGATG 460
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 259 TTGCCCGAGACGGGATGGCGGAAAAGGATTGGCTGTCCCTTGTTGCTGTCCACAGTGATG 318
Query 461 CTTGGCTTCTTGCTGTTGCTTTCTTTTTTGGAGCCAGGTTTGGATTTGACAAAGCTGATA 520
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 CCTGGCTTCTTGCTGTTGCTTTCTTTTTTGGAGCCAGGTTTGGATTTGACAAAGCTGATA 378
Query 521 GGAAGAGGCTTTTCAATATGGTGAATGACCTCCCAACAATCTTT-GAGGTTGTAGCTGGC 579
|||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||
Sbjct 379 GGAAGAGGCTTTTCAATATGGTGAATGACCTCCCAACAAT-TTTCGAGGTTGTGGCTGGC 437
Query 580 ACTGCTAAGAAACAAGGAAAAGATAAGTCCTCTGTTTCCAACAACAGCAGCAACAGATCC 639
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 438 ACTGCTAAGAAACAAGGAAAGGATAAGTCCTCTGTTTCCAACAACAGCAGCAACAGATCC 497
Query 640 AAATCAAGCTCCAAGCGAGGATCTGAATCCCGTGCCAAGTTCTCAAAGCCggagccgaaa 699
|||||||||||||||||||||||||||||||| |||| |||||||||||| | ||| |||
Sbjct 498 AAATCAAGCTCCAAGCGAGGATCTGAATCCCGAGCCAGGTTCTCAAAGCCAGTGCCCAAA 557
Query 700 gatgatga-g--gaggaggaagaggaaggtgtggaagaggaggatgaggatgagcaaggt 756
||||| || | ||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 558 GATGAAGATGAAGAGGAAGAAGAGGAAGGTGTGGAAGAGGAGGATGATGATGAGCAAGGT 617
Query 757 gaaACACAGTGTGGAGCATGTGGTGAGAGCTATGCAGCTGATGAGTTCTGGATTTGCTGT 816
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 618 GAAACACAGTGTGGGGCATGTGGTGAGAGCTATGCAGCTGATGAGTTCTGGATTTGCTGT 677
Query 817 GACCTCTGTGAGATGTGGTTTCATGGAAAGTGTGTTAAGATAACACCAGCAAGAGCTGAG 876
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 678 GACCTCTGTGAGATGTGGTTTCATGGAAAGTGTGTGAAGATAACACCAGCAAGGGCTGAG 737
Query 877 CACATCAAGCAATACAAGTGCCCTTCTTGCAGCAACAAAAGGGCTCGTTCCTAAATTTGT 936
||||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||
Sbjct 738 CACATCAAGCAATACAAGTGCCCATCTTGCAGCAACAAGAGGGCTCGTTCCTAAACTTGT 797
Query 937 TGACCGCTCGCTTCTGTGTA 956
| || ||||||||||||
Sbjct 798 -G---GC-CGCTTCTGTGTA 812
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43955723301
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5